CD-RCd1

TA loci of CD-RCd (Type I)

Number of TA loci: experimental11, insolico311

TA ID Related MGEs Organism (replicon) Genome accession Toxin Antitoxin Family/Domain
experimental TA010171
Link to T1TAdb		 - Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19820 (CD2517.1) - (RCd8) CD-RCd/-
experimental TA010172
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19840 (CD2907.1) - (RCd9) CD-RCd/-
experimental TA010173
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19695 (CD0956.2) - (RCd10) CD-RCd/-
experimental TA010174
Link to T1TAdb		 - Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19720 (CD1418.2) - (CD630_n00500) CD-RCd/-
experimental TA010175
Link to T1TAdb		 - Clostridium difficile 630 (chromosome) NC_009089 - (CD1233.1) - (SQ808) CD-RCd/-
experimental TA010176
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19805 (CD2299.1) - (SQ1641) CD-RCd/-
experimental TA010080
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19700 (CD0977.1) - (RCd11) CD-RCd/-
experimental TA010081
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 CD630_RS19835 (CD2889) - (RCd12) CD-RCd/-
experimental TA010082
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 - (CD0904.1) - (RCd13) CD-RCd/-
experimental TA010083
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 - (CD0956.3) - (RCd14) CD-RCd/-
experimental TA010084
Link to T1TAdb		 Prophage Clostridium difficile 630 (chromosome) NC_009089 - (CD2907.2) - (RCd15) CD-RCd/-
in_silico TA073357 ICE Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS08830 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA073361 Prophage Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS12975 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA073364 - Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS14125 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA073367 - Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS06160 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA073369 - Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS07195 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA073372 Prophage Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS08190 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA073376 Prophage Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS11990 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA073379 - Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS13125 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA073382 Prophage Clostridioides difficile strain DSM 29632 (chromosome) NZ_CP019860 CDIF29632_RS16855 (CD2889) - (RCd12) CD-RCd/-
in_silico TA073386 ICE Clostridioides difficile strain DSM 29747 (chromosome) NZ_CP019864 CDIF29747_RS10585 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA073393 - Clostridioides difficile strain BR81 (chromosome) NZ_CP019870 BZ168_RS05365 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA073396 Prophage Clostridioides difficile strain BR81 (chromosome) NZ_CP019870 BZ168_RS06490 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA074463 - Clostridioides difficile strain DSM 102859 (chromosome) NZ_CP020378 CDIF102859_RS20410 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA074467 - Clostridioides difficile strain DSM 102859 (chromosome) NZ_CP020378 CDIF102859_RS14010 (CD2517.1) - (CD630_n00500) CD-RCd/-
in_silico TA074470 - Clostridioides difficile strain DSM 102859 (chromosome) NZ_CP020378 CDIF102859_RS18215 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074473 - Clostridioides difficile strain DSM 102860 (chromosome) NZ_CP020379 CDIF102860_RS20480 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074476 - Clostridioides difficile strain DSM 102860 (chromosome) NZ_CP020379 CDIF102860_RS14165 (CD2517.1) - (CD630_n00500) CD-RCd/-
in_silico TA074479 - Clostridioides difficile strain DSM 102860 (chromosome) NZ_CP020379 CDIF102860_RS18320 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074482 - Clostridioides difficile strain DSM 102978 (chromosome) NZ_CP020380 CDIF102978_RS20480 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074485 - Clostridioides difficile strain DSM 102978 (chromosome) NZ_CP020380 CDIF102978_RS14165 (CD2517.1) - (CD630_n00500) CD-RCd/-
in_silico TA074488 - Clostridioides difficile strain DSM 102978 (chromosome) NZ_CP020380 CDIF102978_RS18320 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074668 Prophage Clostridioides difficile strain FDAARGOS_267 (chromosome) NZ_CP020424 A6J95_RS08840 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA074672 - Clostridioides difficile strain FDAARGOS_267 (chromosome) NZ_CP020424 A6J95_RS16525 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA074675 Prophage Clostridioides difficile strain FDAARGOS_267 (chromosome) NZ_CP020424 A6J95_RS17675 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA076440 Prophage Clostridioides difficile strain DSM 101085 (chromosome) NZ_CP021319 CDIF101085_RS09710 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA076627 Prophage Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS05825 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA076631 Prophage Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS05950 (CD2889) - (RCd10) CD-RCd/-
in_silico TA076635 - Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS06650 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA076637 - Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS07610 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA076640 ICE Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS08665 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA076645 Prophage Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS12695 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA076648 - Clostridioides difficile strain DSM 104450 (chromosome) NZ_CP021445 CDIF104450_RS13830 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA076651 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS05785 (CD2889) - (RCd10) CD-RCd/-
in_silico TA076655 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS07395 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA076657 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS11795 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA076659 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS12915 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA076662 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS15010 (CD2889) - (RCd12) CD-RCd/-
in_silico TA076666 - Clostridioides difficile strain DSM 104451 (chromosome) NZ_CP021447 CDIF104451_RS15125 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA079157 - Clostridioides difficile strain DH/NAP11/106/ST-42 (chromosome) NZ_CP022524 CGC51_RS06200 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA079160 - Clostridioides difficile strain DH/NAP11/106/ST-42 (chromosome) NZ_CP022524 CGC51_RS11910 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA079163 - Clostridioides difficile strain DH/NAP11/106/ST-42 (chromosome) NZ_CP022524 CGC51_RS13035 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA089589 Prophage Clostridioides difficile strain R0104a (chromosome) NZ_CP025044 CWR57_RS07660 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA089593 - Clostridioides difficile strain W0023a (chromosome) NZ_CP025045 CWR56_RS05645 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA089596 Prophage Clostridioides difficile strain W0023a (chromosome) NZ_CP025045 CWR56_RS11415 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA089599 - Clostridioides difficile strain W0023a (chromosome) NZ_CP025045 CWR56_RS12720 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA089602 Prophage Clostridioides difficile strain W0022a (chromosome) NZ_CP025046 CWR55_RS01335 (CD2889) - (RCd11) CD-RCd/-
in_silico TA089606 Prophage Clostridioides difficile strain W0022a (chromosome) NZ_CP025046 CWR55_RS11515 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA089609 - Clostridioides difficile strain W0022a (chromosome) NZ_CP025046 CWR55_RS12655 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA089612 Prophage Clostridioides difficile strain W0022a (chromosome) NZ_CP025046 CWR55_RS16585 (CD0977.1) - (SQ1641) CD-RCd/-
in_silico TA089616 Prophage Clostridioides difficile strain W0022a (chromosome) NZ_CP025046 CWR55_RS19875 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA089618 Prophage Clostridioides difficile strain W0003a (chromosome) NZ_CP025047 CWR54_RS11305 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA089621 - Clostridioides difficile strain W0003a (chromosome) NZ_CP025047 CWR54_RS12440 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA095206 Prophage Clostridioides difficile strain CD-17-01474 (chromosome) NZ_CP026591 C3L34_RS08320 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095211 Prophage Clostridioides difficile strain CD-10-00484 (chromosome) NZ_CP026592 C3W74_RS08335 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095215 Prophage Clostridioides difficile strain 12-00008 (chromosome) NZ_CP026593 C3347_RS08335 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095219 Prophage Clostridioides difficile strain 08-00495 (chromosome) NZ_CP026594 C3348_RS08340 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095223 Prophage Clostridioides difficile strain 12-00011 (chromosome) NZ_CP026595 C3350_RS08350 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095227 Prophage Clostridioides difficile strain 10-00071 (chromosome) NZ_CP026596 C3349_RS08340 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095231 Prophage Clostridioides difficile strain 10-00078 (chromosome) NZ_CP026597 C3351_RS08350 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095235 - Clostridioides difficile strain 10-00253 (chromosome) NZ_CP026598 C3352_RS08345 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095239 Prophage Clostridioides difficile strain 09-00072 (chromosome) NZ_CP026599 C3353_RS08335 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA095287 ICE Clostridioides difficile strain R1 (chromosome) NZ_CP026613 C4E25_RS10715 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA095290 ICE Clostridioides difficile strain R2 (chromosome) NZ_CP026614 C4E26_RS10715 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA095293 Prophage Clostridioides difficile strain R3 (chromosome) NZ_CP026615 C4E42_RS08475 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA101032 Prophage Clostridioides difficile strain DSM 105001 (chromosome) NZ_CP028361 DSM105001_RS08485 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA101036 Prophage Clostridioides difficile strain DSM 105001 (chromosome) NZ_CP028361 DSM105001_RS12530 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA101039 - Clostridioides difficile strain DSM 105001 (chromosome) NZ_CP028361 DSM105001_RS13660 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA105057 - Clostridioides difficile strain CDT4 (chromosome) NZ_CP029152 DDG61_RS20375 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA105061 - Clostridioides difficile strain CDT4 (chromosome) NZ_CP029152 DDG61_RS20475 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA105064 - Clostridioides difficile strain CD161 (chromosome) NZ_CP029154 DDG63_RS21580 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA105068 - Clostridioides difficile strain CD161 (chromosome) NZ_CP029154 DDG63_RS21665 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA105071 Prophage Clostridioides difficile strain CD161 (chromosome) NZ_CP029154 DDG63_RS21675 (CD2889) - (RCd12) CD-RCd/-
in_silico TA105474 - Clostridioides difficile strain DSM 104452 (chromosome) NZ_CP029345 CDIF104452_RS05500 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA105476 - Clostridioides difficile strain DSM 104452 (chromosome) NZ_CP029345 CDIF104452_RS05650 (CD2889) - (RCd8) CD-RCd/-
in_silico TA105480 - Clostridioides difficile strain DSM 104452 (chromosome) NZ_CP029345 CDIF104452_RS06350 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA105482 - Clostridioides difficile strain DSM 104452 (chromosome) NZ_CP029345 CDIF104452_RS12205 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA105485 - Clostridioides difficile strain DSM 104452 (chromosome) NZ_CP029345 CDIF104452_RS13325 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA105643 Prophage Clostridioides difficile R20291 (chromosome) NZ_CP029423 CDIF27147_RS08075 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA105781 - Clostridioides difficile strain CBA7204 (chromosome) NZ_CP029566 DF008_RS02135 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA105783 Prophage Clostridioides difficile strain CBA7204 (chromosome) NZ_CP029566 DF008_RS04155 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA105787 Prophage Clostridioides difficile strain CBA7204 (chromosome) NZ_CP029566 DF008_RS07915 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA105790 - Clostridioides difficile strain CBA7204 (chromosome) NZ_CP029566 DF008_RS09060 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA113408 Prophage Clostridioides difficile strain CD10010 (chromosome) NZ_CP033213 EBB60_RS10395 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA113411 Prophage Clostridioides difficile strain 12038 (chromosome) NZ_CP033214 EBL90_RS10540 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA113414 - Clostridioides difficile strain CD21062 (chromosome) NZ_CP033216 EBL91_RS09880 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120018 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS01050 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120021 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS02180 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120024 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS07850 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120026 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS08550 (CD2889) - (RCd12) CD-RCd/-
in_silico TA120030 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS08670 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120032 - Clostridioides difficile strain Cd29 (chromosome) NZ_CP037797 E1H52_RS12670 (CD2889) - (RCd12) CD-RCd/-
in_silico TA120036 - Clostridioides difficile strain Cd23 (chromosome) NZ_CP037802 E1H46_RS06090 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120038 - Clostridioides difficile strain Cd23 (chromosome) NZ_CP037802 E1H46_RS07085 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120041 - Clostridioides difficile strain Cd23 (chromosome) NZ_CP037802 E1H46_RS08055 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120045 - Clostridioides difficile strain Cd23 (chromosome) NZ_CP037802 E1H46_RS12945 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120048 - Clostridioides difficile strain Cd18 (chromosome) NZ_CP037806 E1H41_RS11805 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120051 - Clostridioides difficile strain Cd18 (chromosome) NZ_CP037806 E1H41_RS12945 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120054 - Clostridioides difficile strain Cd17 (chromosome) NZ_CP037811 E1H40_RS09765 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120057 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS05545 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120061 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS05700 (CD2889) - (RCd8) CD-RCd/-
in_silico TA120065 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS06400 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120067 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS08405 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120071 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS12450 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120074 - Clostridioides difficile strain Cd16 (chromosome) NZ_CP037812 E1H39_RS13580 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120077 - Clostridioides difficile strain Cd14 (chromosome) NZ_CP037818 E1H37_RS01805 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120081 - Clostridioides difficile strain Cd14 (chromosome) NZ_CP037818 E1H37_RS01930 (CD2889) - (RCd8) CD-RCd/-
in_silico TA120085 - Clostridioides difficile strain Cd14 (chromosome) NZ_CP037818 E1H37_RS08720 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120089 - Clostridioides difficile strain Cd14 (chromosome) NZ_CP037818 E1H37_RS12760 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120091 - Clostridioides difficile strain Cd14 (chromosome) NZ_CP037818 E1H37_RS13890 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120094 - Clostridioides difficile strain Cd12 (chromosome) NZ_CP037821 E1H35_RS11730 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120097 - Clostridioides difficile strain Cd12 (chromosome) NZ_CP037821 E1H35_RS12845 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120100 - Clostridioides difficile strain Cd11 (chromosome) NZ_CP037822 E1H34_RS06165 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120103 - Clostridioides difficile strain Cd11 (chromosome) NZ_CP037822 E1H34_RS07155 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120106 - Clostridioides difficile strain Cd11 (chromosome) NZ_CP037822 E1H34_RS11875 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120109 - Clostridioides difficile strain Cd11 (chromosome) NZ_CP037822 E1H34_RS12995 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120112 - Clostridioides difficile strain Cd10 (chromosome) NZ_CP037827 E1H33_RS01920 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA120116 - Clostridioides difficile strain Cd10 (chromosome) NZ_CP037827 E1H33_RS07340 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120119 - Clostridioides difficile strain Cd10 (chromosome) NZ_CP037827 E1H33_RS08310 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120123 - Clostridioides difficile strain Cd10 (chromosome) NZ_CP037827 E1H33_RS12100 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120126 - Clostridioides difficile strain Cd10 (chromosome) NZ_CP037827 E1H33_RS13245 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120129 - Clostridioides difficile strain Cd9 (chromosome) NZ_CP037830 E1H32_RS06040 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120132 - Clostridioides difficile strain Cd9 (chromosome) NZ_CP037830 E1H32_RS11935 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120135 - Clostridioides difficile strain Cd9 (chromosome) NZ_CP037830 E1H32_RS13065 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120138 - Clostridioides difficile strain Cd8 (chromosome) NZ_CP037831 E1H31_RS06160 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA120141 - Clostridioides difficile strain Cd8 (chromosome) NZ_CP037831 E1H31_RS07145 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120144 - Clostridioides difficile strain Cd8 (chromosome) NZ_CP037831 E1H31_RS11875 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120147 - Clostridioides difficile strain Cd8 (chromosome) NZ_CP037831 E1H31_RS12995 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120150 - Clostridioides difficile strain Cd7 (chromosome) NZ_CP037835 E1H30_RS01910 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA120154 - Clostridioides difficile strain Cd7 (chromosome) NZ_CP037835 E1H30_RS07335 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120157 - Clostridioides difficile strain Cd7 (chromosome) NZ_CP037835 E1H30_RS08305 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120161 - Clostridioides difficile strain Cd7 (chromosome) NZ_CP037835 E1H30_RS12105 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120164 - Clostridioides difficile strain Cd7 (chromosome) NZ_CP037835 E1H30_RS13250 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120167 - Clostridioides difficile strain Cd6 (chromosome) NZ_CP037839 E1H29_RS07475 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120170 - Clostridioides difficile strain Cd6 (chromosome) NZ_CP037839 E1H29_RS12290 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120173 - Clostridioides difficile strain Cd6 (chromosome) NZ_CP037839 E1H29_RS13410 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA120176 - Clostridioides difficile strain Cd6 (chromosome) NZ_CP037839 E1H29_RS15530 (CD2889) - (RCd12) CD-RCd/-
in_silico TA120180 - Clostridioides difficile strain Cd5 (chromosome) NZ_CP037840 E1H28_RS01935 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA120184 - Clostridioides difficile strain Cd5 (chromosome) NZ_CP037840 E1H28_RS07340 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA120187 - Clostridioides difficile strain Cd5 (chromosome) NZ_CP037840 E1H28_RS08310 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA120191 - Clostridioides difficile strain Cd5 (chromosome) NZ_CP037840 E1H28_RS12095 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA120194 - Clostridioides difficile strain Cd5 (chromosome) NZ_CP037840 E1H28_RS13235 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA135121 Prophage Clostridioides difficile strain Mta-79 (chromosome) NZ_CP042267 FQN08_RS06035 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA135124 - Clostridioides difficile strain Mta-79 (chromosome) NZ_CP042267 FQN08_RS07335 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA135127 Prophage Clostridioides difficile strain Mta-79 (chromosome) NZ_CP042267 FQN08_RS12300 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA135130 - Clostridioides difficile strain Mta-79 (chromosome) NZ_CP042267 FQN08_RS13440 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA141524 ICE Clostridioides difficile strain TW11 (chromosome) NZ_CP045224 FTB24_RS04750 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA144008 - Clostridioides difficile strain FDAARGOS_723 (chromosome) NZ_CP046327 FOC31_RS05850 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA151880 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS02080 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA151884 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS05955 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA151887 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS07090 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA151890 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS10880 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA151894 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS11880 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA151896 - Clostridioides difficile strain CFSAN096664 (chromosome) NZ_CP049958 GLV80_RS17805 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA169051 - Clostridioides difficile CD196 (chromosome) NZ_CP059592 H3006_RS08090 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA187262 ICE Clostridioides difficile strain 7009825 (chromosome) NZ_CP068552 JMW47_RS01215 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187265 ICE Clostridioides difficile strain 2016 (chromosome) NZ_CP068553 JMW46_RS01410 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187268 - Clostridioides difficile strain M120 (chromosome) NZ_CP068555 JMW53_RS18095 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187271 ICE Clostridioides difficile strain CD1801 (chromosome) NZ_CP068556 JMW48_RS04630 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187274 - Clostridioides difficile strain CD4401 (chromosome) NZ_CP068557 JMW51_RS10890 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187277 - Clostridioides difficile strain CD9501 (chromosome) NZ_CP068558 JMW52_RS14545 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187279 - Clostridioides difficile strain CD9501 (chromosome) NZ_CP068558 JMW52_RS14765 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA187281 - Clostridioides difficile strain CD9501 (chromosome) NZ_CP068558 JMW52_RS19160 (CD2889) - (RCd12) CD-RCd/-
in_silico TA187285 - Clostridioides difficile strain CD9501 (chromosome) NZ_CP068558 JMW52_RS19620 (CD2889) - (RCd12) CD-RCd/-
in_silico TA187289 Prophage Clostridioides difficile strain CD9701 (chromosome) NZ_CP068559 JMW50_RS06935 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187292 - Clostridioides difficile strain CD9001 (chromosome) NZ_CP068560 JMW55_RS13460 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA187295 Prophage Clostridioides difficile strain CD9301 (chromosome) NZ_CP068561 JMW49_RS16490 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA197328 Prophage Clostridioides difficile isolate MAR286 (chromosome) NZ_CP072118 J6L80_RS07855 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA197331 Prophage Clostridioides difficile isolate MAR286 (chromosome) NZ_CP072118 J6L80_RS12690 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA200148 Prophage Clostridioides difficile strain 2015 (chromosome) NZ_CP073752 KFK07_RS08220 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA204219 - Clostridioides difficile strain MHS-156 (chromosome) NZ_CP075683 KK110_RS09970 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA204222 - Clostridioides difficile strain MT4854 (chromosome) NZ_CP075684 KK111_RS09975 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA204225 - Clostridioides difficile strain MT5121 (chromosome) NZ_CP075685 KK112_RS09955 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA205548 - Clostridioides difficile strain S-0942 (chromosome) NZ_CP076376 KNZ76_RS05935 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA205551 - Clostridioides difficile strain S-0942 (chromosome) NZ_CP076376 KNZ76_RS07220 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA205554 - Clostridioides difficile strain S-0942 (chromosome) NZ_CP076376 KNZ76_RS12055 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA205557 - Clostridioides difficile strain S-0942 (chromosome) NZ_CP076376 KNZ76_RS13185 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA205560 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS01515 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA205564 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS01670 (CD2889) - (RCd8) CD-RCd/-
in_silico TA205568 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS02370 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA205570 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS04375 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA205574 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS08420 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA205577 - Clostridioides difficile strain S-0352 (chromosome) NZ_CP076377 KNZ78_RS09550 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA205615 - Clostridioides difficile strain S-0253 (chromosome) NZ_CP076401 KNZ77_RS11275 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA205618 - Clostridioides difficile strain S-0253 (chromosome) NZ_CP076401 KNZ77_RS12390 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA205621 - Clostridioides difficile strain S-0253 (chromosome) NZ_CP076401 KNZ77_RS16235 (CD2889) - (RCd12) CD-RCd/-
in_silico TA212593 Prophage Clostridioides difficile strain SH (chromosome) NZ_CP081017 K2217_RS08425 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA212597 Prophage Clostridioides difficile strain SH (chromosome) NZ_CP081017 K2217_RS13265 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA212602 Prophage Clostridioides difficile strain CD099 (chromosome) NZ_CP081019 K2218_RS07675 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA212605 Prophage Clostridioides difficile strain CD099 (chromosome) NZ_CP081019 K2218_RS12545 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA212609 - Clostridioides difficile strain G89 (chromosome) NZ_CP081021 K2215_RS06330 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA212612 - Clostridioides difficile strain G89 (chromosome) NZ_CP081021 K2215_RS08315 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA212616 - Clostridioides difficile strain G89 (chromosome) NZ_CP081021 K2215_RS13210 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA212619 - Clostridioides difficile strain CD060 (chromosome) NZ_CP081023 K2216_RS06330 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA212622 - Clostridioides difficile strain CD060 (chromosome) NZ_CP081023 K2216_RS08310 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA212626 - Clostridioides difficile strain CD060 (chromosome) NZ_CP081023 K2216_RS13205 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA215485 - Clostridioides difficile strain FDAARGOS_1469 (chromosome) NZ_CP082868 K8P06_RS01755 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA216878 - Clostridioides difficile strain FDAARGOS_1528 (chromosome) NZ_CP083616 LA362_RS05710 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA216881 - Clostridioides difficile strain FDAARGOS_1528 (chromosome) NZ_CP083616 LA362_RS06840 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA216884 - Clostridioides difficile strain FDAARGOS_1528 (chromosome) NZ_CP083616 LA362_RS10900 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA229947 - Clostridioides difficile strain CDB (chromosome) NZ_CP090060 LWC40_RS07225 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA229950 - Clostridioides difficile strain CDB (chromosome) NZ_CP090060 LWC40_RS11870 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA229953 - Clostridioides difficile strain CDB (chromosome) NZ_CP090060 LWC40_RS12990 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA229956 - Clostridioides difficile strain CDB (chromosome) NZ_CP090060 LWC40_RS15125 (CD2889) - (RCd12) CD-RCd/-
in_silico TA229960 - Clostridioides difficile strain CDB (chromosome) NZ_CP090060 LWC40_RS15265 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260520 Prophage Clostridioides difficile strain R_phiCD75-3 (chromosome) NZ_CP107108 OGM26_RS06275 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA260522 Prophage Clostridioides difficile strain R_phiCD75-3 (chromosome) NZ_CP107108 OGM26_RS08320 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260526 Prophage Clostridioides difficile strain R_cdtRmut6.1 (chromosome) NZ_CP107109 OGM27_RS08085 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260530 Prophage Clostridioides difficile strain R_cdtRstop8 (chromosome) NZ_CP107110 OGM29_RS08090 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260534 Prophage Clostridioides difficile strain R_cdtRstop4.2 (chromosome) NZ_CP107111 OGM31_RS08085 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260538 Prophage Clostridioides difficile strain R_cdtRKO8.1 (chromosome) NZ_CP107112 OGM25_RS08105 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA260542 Prophage Clostridioides difficile strain R_cdtRKO10.3 (chromosome) NZ_CP107113 OGM24_RS08080 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA261731 - Clostridioides difficile strain S0756_078 (chromosome) NZ_CP107552 J5O10_RS10360 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA267072 Prophage Clostridioides difficile R20291 (chromosome) NZ_CP115183 O9S30_RS08095 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA272477 - Clostridioides difficile strain P4D3A1-1 (chromosome) NZ_CP117957 PT260_RS07235 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA282543 - Clostridioides difficile strain CDI-30 (chromosome) NZ_CP126067 ITI90_RS01910 (CD2889) - (RCd8) CD-RCd/-
in_silico TA282546 - Clostridioides difficile strain CDI-30 (chromosome) NZ_CP126067 ITI90_RS11965 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA282548 - Clostridioides difficile strain CDI-30 (chromosome) NZ_CP126067 ITI90_RS13085 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA282550 - Clostridioides difficile strain CDI-24 (chromosome) NZ_CP126068 ITI97_RS06335 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA282551 - Clostridioides difficile strain CDI-24 (chromosome) NZ_CP126068 ITI97_RS12225 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA282553 - Clostridioides difficile strain CDI-24 (chromosome) NZ_CP126068 ITI97_RS13345 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA282555 - Clostridioides difficile strain CDI-24 (chromosome) NZ_CP126068 ITI97_RS16945 (CD0977.1) - (RCd8) CD-RCd/-
in_silico TA282558 - Clostridioides difficile strain CDI-23 (chromosome) NZ_CP126071 ITI96_RS11970 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA282560 - Clostridioides difficile strain CDI-23 (chromosome) NZ_CP126071 ITI96_RS13075 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA282562 - Clostridioides difficile strain CDI-22 (chromosome) NZ_CP126072 ITI92_RS06930 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA282564 - Clostridioides difficile strain CDI-22 (chromosome) NZ_CP126072 ITI92_RS07925 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA282567 - Clostridioides difficile strain CDI-22 (chromosome) NZ_CP126072 ITI92_RS11765 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA282569 - Clostridioides difficile strain CDI-22 (chromosome) NZ_CP126072 ITI92_RS12895 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA282571 - Clostridioides difficile strain CDI-02 (chromosome) NZ_CP126075 ITJ29_RS05925 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA282573 - Clostridioides difficile strain CDI-02 (chromosome) NZ_CP126075 ITJ29_RS07205 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA282575 - Clostridioides difficile strain CDI-02 (chromosome) NZ_CP126075 ITJ29_RS12465 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA282577 - Clostridioides difficile strain CDI-02 (chromosome) NZ_CP126075 ITJ29_RS13580 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA282579 Prophage Clostridioides difficile strain CDI-01 (chromosome) NZ_CP126076 ITJ31_RS08170 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA285464 Prophage Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS20890 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA285467 Prophage Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS20895 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA285470 - Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS20915 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA285471 Prophage Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS21000 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA285473 - Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS21015 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA285475 - Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS21030 (CD2889) - (RCd8) CD-RCd/-
in_silico TA285478 Prophage Clostridioides difficile strain 630Derm (chromosome) NZ_LN614756 CD630DERM_RS21035 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA288705 Prophage Clostridioides difficile isolate MGYG-HGUT-02369 (chromosome) NZ_LR698984 FX037_RS07655 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA024262 Prophage Clostridium difficile CD196 (chromosome) NC_013315 CD196_RS19720 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA024266 Prophage Clostridium difficile R20291 (chromosome) NC_013316 CDR20291_RS07935 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA026325 - Clostridium difficile CF5 (chromosome) NC_017173 CDCF5_RS18895 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA026327 Prophage Clostridium difficile CF5 (chromosome) NC_017173 CDCF5_RS08090 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA026331 Prophage Clostridium difficile CF5 (chromosome) NC_017173 CDCF5_RS12920 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA026334 - Clostridium difficile M120 (chromosome) NC_017174 CDM120_RS19615 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA026337 Prophage Clostridium difficile 2007855 (chromosome) NC_017178 CD7855_RS07930 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA026341 Prophage Clostridium difficile BI1 (chromosome) NC_017179 CDBI1_RS08020 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA040423 - Clostridioides difficile strain CE91-St50 (chromosome) NZ_AP025558 MWL96_RS13030 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA053027 Prophage Clostridioides difficile strain 08ACD0030 (chromosome) NZ_CP010888 TW87_RS19995 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA053029 Prophage Clostridioides difficile strain 08ACD0030 (chromosome) NZ_CP010888 TW87_RS08055 (CD2889) - (RCd8) CD-RCd/-
in_silico TA053033 - Clostridioides difficile strain 08ACD0030 (chromosome) NZ_CP010888 TW87_RS08755 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA053035 Prophage Clostridioides difficile strain 08ACD0030 (chromosome) NZ_CP010888 TW87_RS14615 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA053038 - Clostridioides difficile strain 08ACD0030 (chromosome) NZ_CP010888 TW87_RS15755 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA053077 Prophage Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20460 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA053081 Prophage Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20465 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA053085 - Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20485 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA053087 Prophage Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20565 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA053090 - Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20580 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA053093 Prophage Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20600 (CD2889) - (RCd8) CD-RCd/-
in_silico TA053097 Prophage Clostridioides difficile 630 (chromosome) NZ_CP010905 CDIF630_RS20605 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA055090 - Clostridioides difficile strain DSM 27638 (chromosome) NZ_CP011846 CDIF27638_RS08335 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA055094 - Clostridioides difficile strain DSM 27639 (chromosome) NZ_CP011847 CDIF27639_RS07445 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA055097 Prophage Clostridioides difficile strain DSM 27639 (chromosome) NZ_CP011847 CDIF27639_RS12245 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA055100 - Clostridioides difficile strain DSM 27639 (chromosome) NZ_CP011847 CDIF27639_RS13375 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA055103 Prophage Clostridioides difficile strain DSM 27639 (chromosome) NZ_CP011847 CDIF27639_RS15525 (CD2889) - (RCd12) CD-RCd/-
in_silico TA055107 Prophage Clostridioides difficile strain DSM 27639 (chromosome) NZ_CP011847 CDIF27639_RS20235 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA055110 Prophage Clostridioides difficile strain DSM 27640 (chromosome) NZ_CP011848 CDIF27640_RS08325 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA055280 Prophage Clostridioides difficile ATCC 9689 = DSM 1296 (chromosome) NZ_CP011968 CDIF1296T_RS01835 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA055284 Prophage Clostridioides difficile ATCC 9689 = DSM 1296 (chromosome) NZ_CP011968 CDIF1296T_RS12130 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA055287 - Clostridioides difficile ATCC 9689 = DSM 1296 (chromosome) NZ_CP011968 CDIF1296T_RS13280 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA056253 Prophage Clostridioides difficile strain DSM 28668 (chromosome) NZ_CP012309 CDIF28668_RS08305 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA056257 Prophage Clostridioides difficile strain DSM 28668 (chromosome) NZ_CP012309 CDIF28668_RS12405 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA056260 - Clostridioides difficile strain DSM 28668 (chromosome) NZ_CP012309 CDIF28668_RS13550 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA056263 Prophage Clostridioides difficile strain DSM 28670 (chromosome) NZ_CP012312 CDIF28670_RS08675 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA056267 - Clostridioides difficile strain DSM 28670 (chromosome) NZ_CP012312 CDIF28670_RS14075 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA056270 Prophage Clostridioides difficile strain DSM 28196 (chromosome) NZ_CP012320 CDIF28196_RS08340 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA056274 Prophage Clostridioides difficile strain DSM 28196 (chromosome) NZ_CP012320 CDIF28196_RS12035 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA056277 - Clostridioides difficile strain DSM 28666 (chromosome) NZ_CP012321 CDIF28666_RS07535 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA056280 - Clostridioides difficile strain DSM 28666 (chromosome) NZ_CP012321 CDIF28666_RS12145 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA056283 - Clostridioides difficile strain DSM 28666 (chromosome) NZ_CP012321 CDIF28666_RS13275 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA056286 Prophage Clostridioides difficile strain DSM 28669 (chromosome) NZ_CP012323 CDIF28669_RS08285 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA056290 - Clostridioides difficile strain DSM 28669 (chromosome) NZ_CP012323 CDIF28669_RS13240 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA056293 ICE Clostridioides difficile strain DSM 29020 (chromosome) NZ_CP012325 CDIF29020_RS11060 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA064214 Prophage Clostridioides difficile strain DSM 29627 (chromosome) NZ_CP016102 CDIF29627_RS08530 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA064218 Prophage Clostridioides difficile strain DSM 29627 (chromosome) NZ_CP016102 CDIF29627_RS13430 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA064221 - Clostridioides difficile strain DSM 29629 (chromosome) NZ_CP016104 CDIF29629_RS06430 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA064223 Prophage Clostridioides difficile strain DSM 29629 (chromosome) NZ_CP016104 CDIF29629_RS08440 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA064227 - Clostridioides difficile strain DSM 29629 (chromosome) NZ_CP016104 CDIF29629_RS13195 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA064230 - Clostridioides difficile strain DSM 29637 (chromosome) NZ_CP016106 CDIF29637_RS06080 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA064232 - Clostridioides difficile strain DSM 29637 (chromosome) NZ_CP016106 CDIF29637_RS07100 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA064234 Prophage Clostridioides difficile strain DSM 29637 (chromosome) NZ_CP016106 CDIF29637_RS11905 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA064237 Prophage Clostridioides difficile strain DSM 29637 (chromosome) NZ_CP016106 CDIF29637_RS13165 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA064399 Prophage Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20625 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA064403 Prophage Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20630 (CD0977.1) - (RCd11) CD-RCd/-
in_silico TA064407 - Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20650 (CD1418.2) - (CD630_n00500) CD-RCd/-
in_silico TA064409 Prophage Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20725 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA064412 - Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20740 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA064415 - Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20760 (CD2889) - (RCd8) CD-RCd/-
in_silico TA072514 - Clostridioides difficile strain LEM1 (chromosome) NZ_CP019469 BWD37_RS07170 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA064419 Prophage Clostridioides difficile strain 630 delta erm (chromosome) NZ_CP016318 CDIF630erm_RS20765 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA072517 - Clostridioides difficile strain LEM1 (chromosome) NZ_CP019469 BWD37_RS08370 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA072520 - Clostridioides difficile strain LEM1 (chromosome) NZ_CP019469 BWD37_RS12575 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA072524 - Clostridioides difficile strain LEM1 (chromosome) NZ_CP019469 BWD37_RS15380 (CD2889) - (RCd12) CD-RCd/-
in_silico TA072528 - Clostridioides difficile strain LEM1 (chromosome) NZ_CP019469 BWD37_RS15540 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA073338 Prophage Clostridioides difficile strain DSM 29745 (chromosome) NZ_CP019857 CDIF29745_RS12455 (CD2299.1) - (SQ1641) CD-RCd/-
in_silico TA073341 - Clostridioides difficile strain DSM 29745 (chromosome) NZ_CP019857 CDIF29745_RS13610 (CD2517.1) - (RCd8) CD-RCd/-
in_silico TA073344 Prophage Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS20305 (CD0956.2) - (RCd10) CD-RCd/-
in_silico TA073348 Prophage Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS06060 (CD2889) - (RCd10) CD-RCd/-
in_silico TA073352 - Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS06760 (CD1233.1) - (SQ808) CD-RCd/-
in_silico TA073354 - Clostridioides difficile strain DSM 29688 (chromosome) NZ_CP019858 CDIF29688_RS07765 (CD1418.2) - (CD630_n00500) CD-RCd/-

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    experimentalExperimentally validated     insolicoBioinformatically predicted