MGE detailed information
MGE type: Prophage MGE length: 52962 bp
Accession: NC_009089 Location: 3375898..3428859 Organism: Clostridium difficile 630 Replicon: chromosome
Accession: NC_009089 Location: 3375898..3428859 Organism: Clostridium difficile 630 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630_RS15385 (CD630_28830) | 3371364..3372677 | - | 1314 | WP_003439696.1 | PTS sugar transporter subunit IIC | - |
| CD630_RS15390 (CD630_28840) | 3372699..3373010 | - | 312 | WP_003422688.1 | PTS sugar transporter subunit IIB | - |
| CD630_RS15395 (CD630_28850) | 3373210..3373914 | - | 705 | WP_003426754.1 | GntR family transcriptional regulator | - |
| CD630_RS15400 (CD630_28860) | 3374005..3375366 | - | 1362 | WP_011861729.1 | MATE family efflux transporter | - |
| CD630_RS15405 (CD630_28870) | 3375865..3377019 | + | 1155 | WP_003439713.1 | GGDEF domain-containing protein | - |
| CD630_RS15410 (CD630_28880) | 3377100..3378818 | - | 1719 | WP_011861730.1 | putative 2-aminoethylphosphonate ABC transporter permease subunit | - |
| CD630_RS15415 | 3378823..3379704 | - | 882 | Protein_2998 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CD630_RS19835 (CD630_28890) | 3380278..3380421 | - | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| CD630_RS15420 | 3380679..3380867 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CD630_RS15425 (CD630_28900) | 3381114..3381818 | - | 705 | WP_011861732.1 | hypothetical protein | - |
| CD630_RS15430 (CD630_28910) | 3381820..3382251 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CD630_RS15435 (CD630_28920) | 3382269..3382832 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| CD630_RS15440 (CD630_28930) | 3383378..3383674 | - | 297 | WP_011861049.1 | hypothetical protein | - |
| CD630_RS15445 (CD630_28940) | 3383691..3384506 | - | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD630_RS15450 (CD630_28941) | 3384503..3384763 | - | 261 | WP_011861047.1 | phage holin family protein | - |
| CD630_RS15455 (CD630_28950) | 3384783..3385013 | - | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CD630_RS15460 | 3385048..3385230 | - | 183 | WP_011861045.1 | hypothetical protein | - |
| CD630_RS15465 (CD630_28960) | 3385230..3385523 | - | 294 | WP_011861044.1 | hypothetical protein | - |
| CD630_RS15470 (CD630_28970) | 3385540..3387237 | - | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CD630_RS15475 (CD630_28980) | 3387255..3388058 | - | 804 | WP_011861042.1 | phage tail protein | - |
| CD630_RS15480 (CD630_28990) | 3388070..3388687 | - | 618 | WP_011861041.1 | YmfQ family protein | - |
| CD630_RS15485 (CD630_29000) | 3388680..3389729 | - | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CD630_RS15490 (CD630_29010) | 3389730..3390149 | - | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CD630_RS15495 (CD630_29020) | 3390154..3390414 | - | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CD630_RS15500 (CD630_29030) | 3390428..3392398 | - | 1971 | WP_011861038.1 | hypothetical protein | VF |
| CD630_RS15505 (CD630_29040) | 3392391..3393080 | - | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD630_RS15510 (CD630_29050) | 3393096..3395447 | - | 2352 | WP_011861036.1 | tape measure protein | - |
| CD630_RS15515 (CD630_29060) | 3395518..3396087 | - | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CD630_RS15520 (CD630_29070) | 3396131..3396691 | - | 561 | WP_011861034.1 | lipoprotein | - |
| - | 3398302..3398435 | + | 134 | - | - | Antitoxin Detail |
| CD630_RS19840 (CD630_29071) | 3398355..3398516 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| CD630_RS15530 (CD630_29080) | 3398857..3399297 | - | 441 | WP_003429853.1 | phage portal protein | - |
| CD630_RS15535 (CD630_29090) | 3399369..3399839 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| CD630_RS15540 (CD630_29100) | 3399856..3401166 | - | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CD630_RS19845 (CD630_29101) | 3401168..3401344 | - | 177 | WP_011861031.1 | hypothetical protein | - |
| CD630_RS15545 (CD630_29110) | 3401337..3401774 | - | 438 | WP_009901504.1 | hypothetical protein | - |
| CD630_RS15550 (CD630_29120) | 3401767..3402192 | - | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CD630_RS15555 (CD630_29130) | 3402192..3402539 | - | 348 | WP_003429844.1 | hypothetical protein | - |
| CD630_RS15560 (CD630_29140) | 3402533..3402934 | - | 402 | WP_009888836.1 | hypothetical protein | - |
| CD630_RS15565 (CD630_29150) | 3402944..3403177 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CD630_RS15570 (CD630_29160) | 3403177..3404076 | - | 900 | WP_011861029.1 | phage capsid protein | - |
| CD630_RS15575 (CD630_29170) | 3404088..3404651 | - | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CD630_RS15580 (CD630_29190) | 3404961..3405203 | - | 243 | WP_009901430.1 | hypothetical protein | - |
| CD630_RS15585 (CD630_29200) | 3405169..3406662 | - | 1494 | WP_003429838.1 | minor capsid protein | - |
| CD630_RS15590 (CD630_29210) | 3406652..3408091 | - | 1440 | WP_011861027.1 | phage portal protein | - |
| CD630_RS15595 (CD630_29220) | 3408097..3409350 | - | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CD630_RS15600 (CD630_29230) | 3409328..3410020 | - | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CD630_RS15605 (CD630_29240) | 3410090..3410317 | - | 228 | WP_009894744.1 | hypothetical protein | - |
| CD630_RS15610 (CD630_29250) | 3410441..3410758 | + | 318 | WP_009894743.1 | hypothetical protein | - |
| CD630_RS15615 | 3410738..3410926 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| CD630_RS15620 (CD630_29260) | 3411003..3411614 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| CD630_RS19850 | 3411614..3411787 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| CD630_RS15625 (CD630_29270) | 3412606..3413769 | - | 1164 | WP_032506905.1 | XRE family transcriptional regulator | - |
| CD630_RS15630 (CD630_29280) | 3413788..3414543 | - | 756 | WP_011861735.1 | hypothetical protein | - |
| CD630_RS15635 (CD630_29290) | 3414864..3415352 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CD630_RS15640 (CD630_29300) | 3415446..3416186 | - | 741 | WP_011861736.1 | anti-repressor protein | - |
| CD630_RS15645 (CD630_29310) | 3416249..3416656 | - | 408 | WP_011861737.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CD630_RS15650 (CD630_29320) | 3416646..3417044 | - | 399 | WP_011861738.1 | hypothetical protein | - |
| CD630_RS15655 (CD630_29330) | 3417187..3417513 | - | 327 | WP_011861739.1 | peptide chain release factor-like protein | - |
| CD630_RS15660 (CD630_29340) | 3417584..3417955 | - | 372 | WP_011861740.1 | hypothetical protein | - |
| CD630_RS19855 (CD630_29341) | 3417948..3418121 | - | 174 | WP_011861741.1 | hypothetical protein | - |
| CD630_RS15665 (CD630_29350) | 3418130..3418513 | - | 384 | WP_011861742.1 | DUF1653 domain-containing protein | - |
| CD630_RS15670 (CD630_29360) | 3418525..3419520 | - | 996 | WP_011861743.1 | nucleoid-associated protein | - |
| CD630_RS15675 (CD630_29370) | 3419615..3419890 | - | 276 | WP_011861744.1 | hypothetical protein | - |
| CD630_RS15680 | 3419942..3420100 | - | 159 | WP_018112752.1 | hypothetical protein | - |
| CD630_RS15685 | 3420219..3420392 | - | 174 | WP_021359693.1 | DUF3797 domain-containing protein | - |
| CD630_RS19860 | 3420389..3420529 | - | 141 | WP_021359694.1 | hypothetical protein | - |
| CD630_RS15690 (CD630_29380) | 3420498..3420878 | - | 381 | WP_011861745.1 | hypothetical protein | - |
| CD630_RS15695 (CD630_29390) | 3420882..3421247 | - | 366 | WP_021398171.1 | hypothetical protein | - |
| CD630_RS15700 (CD630_29400) | 3421244..3421507 | - | 264 | WP_011861747.1 | hypothetical protein | - |
| CD630_RS15705 (CD630_29410) | 3421581..3421997 | - | 417 | WP_011861748.1 | single-stranded DNA-binding protein | - |
| CD630_RS15710 (CD630_29420) | 3422013..3422186 | - | 174 | WP_011861749.1 | resolvase | - |
| CD630_RS15715 (CD630_29430) | 3422246..3423196 | - | 951 | WP_011861750.1 | DnaD domain protein | - |
| CD630_RS15720 (CD630_29440) | 3423205..3423795 | - | 591 | WP_011861751.1 | ERF family protein | - |
| CD630_RS15725 (CD630_29450) | 3423805..3424314 | - | 510 | WP_011861752.1 | siphovirus Gp157 family protein | - |
| CD630_RS15730 (CD630_29460) | 3424400..3424717 | - | 318 | WP_011861753.1 | hypothetical protein | - |
| CD630_RS15735 (CD630_29470) | 3424817..3425044 | - | 228 | WP_021391119.1 | hypothetical protein | - |
| CD630_RS15740 (CD630_29471) | 3425019..3425207 | - | 189 | WP_011861755.1 | hypothetical protein | - |
| CD630_RS15745 (CD630_29480) | 3425273..3426067 | - | 795 | WP_011861756.1 | ORF6N domain-containing protein | - |
| CD630_RS15750 (CD630_29490) | 3426115..3426336 | - | 222 | WP_011861757.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS15755 (CD630_29500) | 3426490..3426945 | + | 456 | WP_011861758.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS15760 (CD630_29510) | 3426963..3427436 | + | 474 | WP_011861759.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CD630_RS15765 (CD630_29520) | 3427501..3428859 | + | 1359 | WP_011861760.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CD630_RS15770 | 3428882..3428998 | - | 117 | Protein_3074 | putative 2-aminoethylphosphonate ABC transporter ATP-binding protein | - |
| CD630_RS15775 (CD630_29530) | 3429094..3430143 | - | 1050 | WP_011861761.1 | putative 2-aminoethylphosphonate ABC transporter substrate-binding protein | - |
| CD630_RS15780 (CD630_29540) | 3430420..3431088 | - | 669 | WP_009891221.1 | V-type ATP synthase subunit D | - |
| CD630_RS15785 (CD630_29550) | 3431094..3432467 | - | 1374 | WP_003422669.1 | V-type ATP synthase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridioides difficile 630 | Prophage | TA53093, TA53097 | NZ_CP010905 | 3360426..3413387 | 0 | |
| Clostridioides difficile strain 630 delta erm | Prophage | TA64419 | NZ_CP016318 | 3337899..3386079 | 0.002 | |
| Clostridioides difficile strain 630Derm | Prophage | TA285478 | NZ_LN614756 | 3337900..3386080 | 0.002 |