MGE detailed information
MGE type: Prophage MGE length: 43420 bp
Accession: NZ_CP033213 Location: 2116317..2159736 Organism: Clostridioides difficile strain CD10010 Replicon: chromosome
Accession: NZ_CP033213 Location: 2116317..2159736 Organism: Clostridioides difficile strain CD10010 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBB60_RS10270 () | 2111823..2112743 | + | 921 | WP_003424149.1 | PhzF family isomerase | - |
| EBB60_RS10275 () | 2112968..2113579 | + | 612 | WP_003424150.1 | CoA pyrophosphatase | - |
| EBB60_RS10280 () | 2113884..2114222 | + | 339 | WP_009905652.1 | DUF3784 domain-containing protein | - |
| EBB60_RS10290 () | 2114630..2116066 | - | 1437 | WP_003424153.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| EBB60_RS10295 () | 2116317..2117753 | - | 1437 | WP_009905653.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| EBB60_RS10305 () | 2118582..2119133 | - | 552 | WP_003424155.1 | tryptophan transporter | - |
| EBB60_RS10310 () | 2119958..2120380 | - | 423 | WP_122045919.1 | hypothetical protein | - |
| EBB60_RS10315 () | 2120718..2121203 | - | 486 | WP_009905654.1 | SH3 domain-containing protein | - |
| EBB60_RS10320 () | 2121729..2122067 | - | 339 | WP_003424159.1 | hypothetical protein | - |
| EBB60_RS10325 () | 2122054..2122281 | - | 228 | WP_003424160.1 | helix-turn-helix domain-containing protein | - |
| EBB60_RS10330 () | 2122618..2122854 | + | 237 | WP_003424162.1 | hypothetical protein | - |
| EBB60_RS10335 () | 2123131..2123415 | - | 285 | WP_122045920.1 | hypothetical protein | - |
| EBB60_RS10340 () | 2123757..2124014 | - | 258 | WP_003424164.1 | hypothetical protein | - |
| EBB60_RS10345 () | 2124153..2124524 | - | 372 | WP_003424165.1 | hypothetical protein | - |
| EBB60_RS10350 () | 2124967..2125539 | - | 573 | WP_003424166.1 | hypothetical protein | - |
| EBB60_RS10365 () | 2126525..2126719 | - | 195 | WP_003424168.1 | hypothetical protein | - |
| EBB60_RS10375 () | 2127256..2127636 | - | 381 | WP_003424180.1 | hypothetical protein | - |
| EBB60_RS10380 () | 2127629..2127886 | - | 258 | WP_003424182.1 | hypothetical protein | - |
| EBB60_RS10385 () | 2127873..2128106 | - | 234 | WP_003424184.1 | hypothetical protein | - |
| EBB60_RS10390 () | 2128294..2128482 | + | 189 | WP_003424185.1 | helix-turn-helix transcriptional regulator | - |
| - () | 2131370..2131470 | + | 101 | NuclAT_0 | - | Antitoxin Detail |
| EBB60_RS10395 () | 2131414..2131566 | - | 153 | WP_003424190.1 | hypothetical protein | Toxin Detail |
| EBB60_RS10400 () | 2132086..2132328 | + | 243 | WP_003424191.1 | hypothetical protein | - |
| EBB60_RS10405 () | 2132394..2132939 | + | 546 | WP_077699404.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| EBB60_RS10410 () | 2133484..2134329 | + | 846 | WP_003424194.1 | DUF4878 domain-containing protein | - |
| EBB60_RS10415 () | 2134553..2134717 | - | 165 | WP_003424195.1 | hypothetical protein | - |
| EBB60_RS10420 () | 2135249..2135580 | - | 332 | Protein_1914 | carboxymuconolactone decarboxylase family protein | - |
| EBB60_RS10425 () | 2135840..2136481 | - | 642 | WP_003424198.1 | SdpI family protein | - |
| EBB60_RS10430 () | 2136462..2136755 | - | 294 | WP_009889969.1 | autorepressor SdpR family transcription factor | - |
| EBB60_RS10435 () | 2137149..2137208 | + | 60 | WP_071585685.1 | hypothetical protein | - |
| EBB60_RS10445 () | 2137724..2138476 | - | 753 | WP_003424201.1 | TSUP family transporter | - |
| EBB60_RS10450 () | 2138537..2140192 | - | 1656 | WP_003424202.1 | PocR ligand-binding domain-containing protein | - |
| EBB60_RS10455 () | 2140204..2140566 | - | 363 | WP_009905671.1 | Transcriptional regulator MntR | VF |
| EBB60_RS10460 () | 2140881..2141249 | - | 369 | WP_003424204.1 | IS607 family transposase ISCbo6 | Transposase |
| EBB60_RS10465 () | 2141398..2142192 | + | 795 | WP_009905672.1 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | - |
| EBB60_RS10470 () | 2142345..2142773 | - | 429 | WP_003424207.1 | flavodoxin | - |
| EBB60_RS10475 () | 2143287..2144225 | - | 939 | WP_003424208.1 | Major intracellular serine protease | VF |
| EBB60_RS10480 () | 2144739..2145551 | - | 813 | WP_003424210.1 | alpha/beta hydrolase | - |
| EBB60_RS10485 () | 2145580..2146206 | - | 627 | WP_009905677.1 | TetR/AcrR family transcriptional regulator | - |
| EBB60_RS10490 () | 2146547..2148202 | - | 1656 | WP_003424214.1 | dihydroxy-acid dehydratase | - |
| EBB60_RS10495 () | 2148524..2148823 | - | 300 | WP_003424216.1 | hypothetical protein | - |
| EBB60_RS10500 () | 2149080..2149760 | + | 681 | WP_003424218.1 | VanZ family protein | - |
| EBB60_RS10505 () | 2149870..2150127 | - | 258 | WP_003424219.1 | hypothetical protein | - |
| EBB60_RS10510 () | 2150671..2151042 | + | 372 | WP_003424221.1 | helix-turn-helix domain-containing protein | - |
| EBB60_RS10515 () | 2151039..2151179 | - | 141 | WP_009889993.1 | hypothetical protein | - |
| EBB60_RS10520 () | 2151845..2152741 | - | 897 | WP_003424224.1 | AraC family transcriptional regulator | - |
| EBB60_RS10525 () | 2152883..2154250 | + | 1368 | WP_077744853.1 | MFS transporter | - |
| EBB60_RS10530 () | 2154487..2157081 | - | 2595 | WP_003424228.1 | Chaperone protein ClpB | VF |
| EBB60_RS10535 () | 2157118..2157714 | - | 597 | WP_003424230.1 | hypothetical protein | - |
| EBB60_RS10540 () | 2157731..2158135 | - | 405 | WP_003424231.1 | replication/maintenance protein RepL | - |
| EBB60_RS10545 () | 2158502..2158876 | + | 375 | WP_003424232.1 | GntR family transcriptional regulator | - |
| EBB60_RS10550 () | 2158873..2159736 | + | 864 | WP_003424233.1 | ABC transporter ATP-binding protein NatA | VF |
| EBB60_RS10555 () | 2159736..2160374 | + | 639 | WP_003424234.1 | ABC-2 transporter permease | - |
| EBB60_RS10560 () | 2160864..2161277 | + | 414 | WP_009905693.1 | GNAT family N-acetyltransferase | - |
| EBB60_RS10565 () | 2161469..2162686 | + | 1218 | WP_003424236.1 | M20 family metallo-hydrolase | - |
| EBB60_RS10570 () | 2162848..2163546 | + | 699 | WP_003424237.1 | amino acid racemase | - |
| EBB60_RS10575 () | 2163740..2164357 | - | 618 | WP_003424239.1 | DUF4878 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|