MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP029423 Location: 1684612..1751049 Organism: Clostridioides difficile R20291 Replicon: chromosome
Accession: NZ_CP029423 Location: 1684612..1751049 Organism: Clostridioides difficile R20291 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27147_RS07830 () | 1679717..1680478 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CDIF27147_RS07835 () | 1681009..1681248 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF27147_RS07840 () | 1681518..1682513 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CDIF27147_RS07845 () | 1682566..1684254 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF27147_RS07850 () | 1684612..1685742 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF27147_RS07855 () | 1685821..1686528 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CDIF27147_RS07860 () | 1686541..1687410 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CDIF27147_RS07865 () | 1688030..1688536 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF27147_RS07870 () | 1688612..1689160 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS07875 () | 1689172..1689513 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDIF27147_RS07880 () | 1689690..1689893 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS07885 () | 1689941..1690750 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CDIF27147_RS07890 () | 1690797..1691006 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF27147_RS07895 () | 1691016..1691390 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF27147_RS07900 () | 1691466..1691663 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS07905 () | 1691694..1692086 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS07910 () | 1692073..1692216 | + | 144 | WP_009888817.1 | hypothetical protein | - |
| CDIF27147_RS07915 () | 1692287..1692724 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF27147_RS07920 () | 1692736..1693902 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CDIF27147_RS07925 () | 1693917..1694252 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDIF27147_RS07930 () | 1694305..1694877 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF27147_RS07935 () | 1694900..1695472 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF27147_RS07940 () | 1695472..1697430 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CDIF27147_RS07945 () | 1697442..1699859 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CDIF27147_RS07950 () | 1700141..1700467 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDIF27147_RS07955 () | 1700416..1701786 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CDIF27147_RS07960 () | 1701810..1701947 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CDIF27147_RS07965 () | 1701940..1702419 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF27147_RS07970 () | 1702702..1703251 | + | 550 | Protein_1482 | Bro-N domain-containing protein | - |
| CDIF27147_RS07975 () | 1703446..1704420 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CDIF27147_RS07980 () | 1704441..1704950 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF27147_RS07985 () | 1705020..1705712 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS07990 () | 1705690..1706943 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CDIF27147_RS07995 () | 1706949..1708391 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CDIF27147_RS08000 () | 1708381..1709916 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CDIF27147_RS08005 () | 1709918..1710166 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDIF27147_RS08010 () | 1710234..1710797 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CDIF27147_RS08015 () | 1710809..1711699 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CDIF27147_RS08020 () | 1711718..1711951 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CDIF27147_RS08025 () | 1711961..1712362 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF27147_RS08030 () | 1712356..1712703 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDIF27147_RS08035 () | 1712703..1712993 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CDIF27147_RS08040 () | 1713103..1713909 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CDIF27147_RS08045 () | 1714258..1714695 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CDIF27147_RS08050 () | 1714688..1714864 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CDIF27147_RS08055 () | 1714865..1716175 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CDIF27147_RS08060 () | 1716192..1716662 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CDIF27147_RS08065 () | 1716721..1717548 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CDIF27147_RS08070 () | 1717620..1718060 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF27147_RS08075 () | 1718401..1718562 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718482..1718621 | - | 140 | - | - | Antitoxin Detail |
| CDIF27147_RS08080 () | 1719899..1720087 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDIF27147_RS08085 () | 1720206..1721072 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CDIF27147_RS08090 () | 1721937..1722464 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CDIF27147_RS08095 () | 1722602..1723369 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CDIF27147_RS08100 () | 1723435..1725807 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CDIF27147_RS08105 () | 1725824..1726513 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF27147_RS08110 () | 1726506..1728398 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF27147_RS08115 () | 1728412..1728672 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CDIF27147_RS08120 () | 1728677..1729096 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CDIF27147_RS08125 () | 1729097..1730146 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CDIF27147_RS08130 () | 1730139..1730756 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDIF27147_RS08135 () | 1730768..1731793 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CDIF27147_RS08140 () | 1731810..1733336 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CDIF27147_RS08145 () | 1733351..1733644 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CDIF27147_RS08150 () | 1733644..1733826 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CDIF27147_RS08155 () | 1733860..1734426 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CDIF27147_RS08160 () | 1734457..1734747 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CDIF27147_RS08165 () | 1734751..1735008 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDIF27147_RS08170 () | 1735269..1736132 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CDIF27147_RS08175 () | 1736211..1737023 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF27147_RS08180 () | 1737117..1739516 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CDIF27147_RS08185 () | 1739557..1739742 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF27147_RS08190 () | 1740437..1741114 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CDIF27147_RS08195 () | 1741288..1743324 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CDIF27147_RS08200 () | 1743515..1744081 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDIF27147_RS08205 () | 1744365..1744892 | + | 528 | Protein_1529 | alpha/beta fold hydrolase | - |
| CDIF27147_RS08210 () | 1745524..1745631 | + | 108 | WP_009889455.1 | transposase | - |
| CDIF27147_RS08215 () | 1745633..1746750 | + | 1118 | Protein_1531 | IS200-IS605 family transposase ISBth17 | Transposase |
| CDIF27147_RS08220 () | 1746815..1747276 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CDIF27147_RS08225 () | 1747741..1748955 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF27147_RS08230 () | 1749375..1749896 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CDIF27147_RS08235 () | 1750252..1751049 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDIF27147_RS08240 () | 1751159..1751749 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF27147_RS08245 () | 1751815..1753512 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CDIF27147_RS08250 () | 1753726..1754565 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |