MGE detailed information
MGE type: Prophage MGE length: 15766 bp
Accession: NZ_CP029566 Location: 1684921..1700686 Organism: Clostridioides difficile strain CBA7204 Replicon: chromosome
Accession: NZ_CP029566 Location: 1684921..1700686 Organism: Clostridioides difficile strain CBA7204 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF008_RS07845 () | 1680137..1680838 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| DF008_RS07850 () | 1680831..1681154 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| DF008_RS07855 () | 1681360..1683420 | - | 2061 | WP_175345182.1 | sensor histidine kinase | - |
| DF008_RS07860 () | 1683616..1684308 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| DF008_RS07865 () | 1684921..1685295 | - | 375 | WP_004454568.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| DF008_RS07870 () | 1685514..1685747 | + | 234 | WP_075052765.1 | hypothetical protein | VF |
| DF008_RS07875 () | 1685731..1686144 | + | 414 | WP_004454570.1 | hypothetical protein | - |
| DF008_RS07880 () | 1686163..1686363 | + | 201 | WP_021362723.1 | hypothetical protein | - |
| DF008_RS07885 () | 1686741..1687058 | + | 318 | WP_004454574.1 | hypothetical protein | - |
| DF008_RS07890 () | 1687194..1687658 | + | 465 | WP_025782691.1 | hypothetical protein | - |
| DF008_RS07895 () | 1687987..1688148 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| DF008_RS07900 () | 1688200..1688652 | - | 453 | WP_201449208.1 | hypothetical protein | - |
| DF008_RS07905 () | 1688649..1689014 | - | 366 | WP_016729316.1 | Bro-N domain-containing protein | - |
| DF008_RS18560 () | 1689135..1689287 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| DF008_RS07910 () | 1690823..1691746 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - () | 1691890..1692019 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| DF008_RS07915 () | 1691940..1692092 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| DF008_RS07920 () | 1692366..1692689 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| DF008_RS07925 () | 1692725..1692979 | - | 255 | WP_159376477.1 | hypothetical protein | - |
| DF008_RS07935 () | 1693419..1693937 | - | 519 | Protein_1554 | IS200-IS605 family transposase ISEfa4 | Transposase |
| DF008_RS07940 () | 1694220..1694595 | - | 376 | Protein_1555 | BlaI/MecI/CopY family transcriptional regulator | - |
| DF008_RS07945 () | 1694700..1695077 | - | 378 | WP_095905896.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| DF008_RS07950 () | 1695882..1696376 | + | 495 | WP_021422415.1 | Type II secretion system protein G | VF |
| DF008_RS07955 () | 1696765..1696935 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| DF008_RS18600 () | 1697412..1697601 | - | 190 | Protein_1559 | hypothetical protein | - |
| DF008_RS07960 () | 1697763..1698113 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| DF008_RS07965 () | 1698115..1698315 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| DF008_RS07970 () | 1698638..1698814 | + | 177 | WP_159376264.1 | hypothetical protein | - |
| DF008_RS07975 () | 1699039..1699239 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| DF008_RS07980 () | 1699874..1700686 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| DF008_RS07985 () | 1700696..1701487 | + | 792 | WP_124962586.1 | ABC transporter permease | - |
| DF008_RS07990 () | 1701489..1702184 | + | 696 | WP_124962587.1 | ATP-binding cassette domain-containing protein | - |
| DF008_RS07995 () | 1702171..1702902 | + | 732 | WP_009890514.1 | membrane protein | - |
| DF008_RS08000 () | 1703216..1704016 | + | 801 | WP_159376265.1 | PIG-L family deacetylase | - |
| DF008_RS08005 () | 1704555..1705271 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.009 |