MGE detailed information
MGE type: Prophage MGE length: 17137 bp
Accession: NZ_CP011847 Location: 2536302..2553438 Organism: Clostridioides difficile strain DSM 27639 Replicon: chromosome
Accession: NZ_CP011847 Location: 2536302..2553438 Organism: Clostridioides difficile strain DSM 27639 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27639_RS12165 () | 2531519..2532220 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF27639_RS12170 () | 2532213..2532536 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF27639_RS12175 () | 2532742..2534802 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CDIF27639_RS12185 () | 2534998..2535690 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF27639_RS12190 () | 2536302..2536676 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF27639_RS12195 () | 2536895..2537128 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF27639_RS12200 () | 2537112..2537525 | + | 414 | WP_021361917.1 | hypothetical protein | - |
| CDIF27639_RS12205 () | 2537544..2537840 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CDIF27639_RS12210 () | 2538123..2538440 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CDIF27639_RS12215 () | 2538576..2539040 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CDIF27639_RS12225 () | 2539368..2539529 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF27639_RS12230 () | 2539581..2540394 | - | 814 | Protein_2257 | toxin Bro | - |
| CDIF27639_RS20200 () | 2540514..2540666 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CDIF27639_RS12240 () | 2542075..2542998 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - () | 2543142..2543271 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| CDIF27639_RS12245 () | 2543192..2543344 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF27639_RS12250 () | 2543618..2543941 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF27639_RS12255 () | 2543977..2544231 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF27639_RS12265 () | 2544667..2545185 | - | 519 | Protein_2263 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF27639_RS12270 () | 2545475..2545850 | - | 376 | Protein_2264 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF27639_RS12275 () | 2545955..2546332 | - | 378 | WP_011861518.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF27639_RS12280 () | 2547136..2547630 | + | 495 | WP_011861519.1 | Type II secretion system protein G | VF |
| CDIF27639_RS12285 () | 2548019..2548189 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CDIF27639_RS12290 () | 2548666..2548855 | - | 190 | Protein_2268 | IS3 family transposase ISEfa10 | Transposase |
| CDIF27639_RS12295 () | 2549017..2549367 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CDIF27639_RS12300 () | 2549369..2549569 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CDIF27639_RS12305 () | 2549892..2550068 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF27639_RS12310 () | 2550293..2550493 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF27639_RS12315 () | 2551128..2551940 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF27639_RS12320 () | 2551950..2552741 | + | 792 | WP_011861521.1 | ABC transporter permease | - |
| CDIF27639_RS12325 () | 2552743..2553438 | + | 696 | WP_011861522.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| CDIF27639_RS12330 () | 2553425..2554156 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF27639_RS12335 () | 2554470..2555270 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF27639_RS12340 () | 2555810..2556526 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CDIF27639_RS12345 () | 2556495..2558084 | + | 1590 | WP_021361920.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0 |