MGE detailed information
MGE type: Prophage MGE length: 69954 bp
Accession: NZ_CP026594 Location: 1684676..1754629 Organism: Clostridioides difficile strain 08-00495 Replicon: chromosome
Accession: NZ_CP026594 Location: 1684676..1754629 Organism: Clostridioides difficile strain 08-00495 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3348_RS08095 () | 1679781..1680542 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3348_RS08100 () | 1681073..1681312 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3348_RS08105 () | 1681582..1682577 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3348_RS08110 () | 1682630..1684318 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3348_RS08115 () | 1684676..1685806 | - | 1131 | WP_003429803.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C3348_RS08120 () | 1685885..1686592 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3348_RS08125 () | 1686605..1687474 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3348_RS08130 () | 1688094..1688600 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3348_RS08135 () | 1688676..1689224 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3348_RS08140 () | 1689236..1689577 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3348_RS08145 () | 1689754..1689957 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3348_RS08150 () | 1690005..1690814 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3348_RS08155 () | 1690861..1691070 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3348_RS08160 () | 1691080..1691454 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3348_RS08165 () | 1691530..1691727 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3348_RS08170 () | 1691758..1692150 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3348_RS19525 () | 1692131..1692280 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3348_RS08175 () | 1692351..1692788 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3348_RS08180 () | 1692800..1693966 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3348_RS08185 () | 1693981..1694316 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3348_RS08190 () | 1694369..1694941 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3348_RS08195 () | 1694964..1695536 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3348_RS08200 () | 1695536..1697494 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3348_RS08205 () | 1697506..1699923 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3348_RS08210 () | 1700205..1700531 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3348_RS08215 () | 1700480..1701850 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3348_RS19615 () | 1701874..1702011 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3348_RS08220 () | 1702004..1702483 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3348_RS08225 () | 1702766..1703315 | + | 550 | Protein_1486 | Bro-N domain-containing protein | - |
| C3348_RS08230 () | 1703510..1704484 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3348_RS19530 () | 1704505..1705014 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3348_RS08245 () | 1705084..1705776 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3348_RS08250 () | 1705754..1707007 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3348_RS08255 () | 1707013..1708455 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3348_RS08260 () | 1708445..1709980 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3348_RS08265 () | 1709982..1710230 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3348_RS08270 () | 1710298..1710861 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3348_RS08275 () | 1710873..1711763 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3348_RS08280 () | 1711782..1712015 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3348_RS08285 () | 1712025..1712426 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3348_RS08290 () | 1712420..1712767 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3348_RS08295 () | 1712767..1713057 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3348_RS08300 () | 1713167..1713973 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3348_RS08305 () | 1714322..1714759 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3348_RS08310 () | 1714752..1714928 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3348_RS08315 () | 1714929..1716239 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3348_RS08320 () | 1716256..1716726 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3348_RS08325 () | 1716785..1717612 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3348_RS08330 () | 1717684..1718124 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3348_RS08340 () | 1718465..1718626 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718546..1718685 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718546..1718685 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1719030..1719078 | - | 49 | NuclAT_4 | - | - |
| - () | 1719030..1719078 | - | 49 | NuclAT_5 | - | - |
| C3348_RS08345 () | 1719963..1720151 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3348_RS08350 () | 1720270..1721136 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3348_RS08360 () | 1722001..1722528 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3348_RS08365 () | 1722666..1723433 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3348_RS08370 () | 1723499..1725871 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3348_RS08375 () | 1725888..1726577 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3348_RS08380 () | 1726570..1728462 | + | 1893 | WP_009893140.1 | hypothetical protein | VF |
| C3348_RS08385 () | 1728476..1728736 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3348_RS08390 () | 1728741..1729160 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3348_RS08395 () | 1729161..1730210 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3348_RS08400 () | 1730203..1730820 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3348_RS08405 () | 1730832..1731857 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3348_RS08410 () | 1731874..1733400 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3348_RS08415 () | 1733415..1733708 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3348_RS08420 () | 1733708..1733890 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3348_RS08425 () | 1733924..1734490 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3348_RS08430 () | 1734521..1734811 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3348_RS08435 () | 1734815..1735072 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3348_RS08440 () | 1735333..1736196 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3348_RS08445 () | 1736275..1737087 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3348_RS08450 () | 1737181..1739580 | + | 2400 | WP_009893147.1 | hypothetical protein | VF |
| C3348_RS08455 () | 1739621..1739806 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3348_RS08460 () | 1740501..1741178 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3348_RS08465 () | 1741352..1743388 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3348_RS08470 () | 1743579..1744145 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3348_RS08475 () | 1744429..1744956 | + | 528 | Protein_1533 | alpha/beta fold hydrolase | - |
| C3348_RS08485 () | 1745588..1745695 | + | 108 | WP_009889455.1 | transposase | - |
| C3348_RS08490 () | 1745697..1746814 | + | 1118 | Protein_1535 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3348_RS08495 () | 1746879..1747340 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3348_RS08500 () | 1747805..1749019 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3348_RS08505 () | 1749439..1749960 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3348_RS08510 () | 1750316..1751113 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3348_RS08515 () | 1751223..1751813 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3348_RS08520 () | 1751879..1753576 | + | 1698 | WP_009893157.1 | hypothetical protein | VF |
| C3348_RS08525 () | 1753790..1754629 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
| C3348_RS08530 () | 1755146..1757002 | + | 1857 | WP_009893166.1 | PAS domain-containing protein | - |
| C3348_RS08535 () | 1757711..1758928 | + | 1218 | WP_009893168.1 | homoserine dehydrogenase | - |
| C3348_RS08540 () | 1759042..1759536 | + | 495 | WP_009893169.1 | exosporium morphogenetic protein CdeM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0.001 |