MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP011848 Location: 1681045..1747482 Organism: Clostridioides difficile strain DSM 27640 Replicon: chromosome
Accession: NZ_CP011848 Location: 1681045..1747482 Organism: Clostridioides difficile strain DSM 27640 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27640_RS08075 () | 1676150..1676911 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CDIF27640_RS08080 () | 1677442..1677681 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF27640_RS08085 () | 1677951..1678946 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CDIF27640_RS08090 () | 1678999..1680687 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF27640_RS08095 () | 1681045..1682175 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF27640_RS08100 () | 1682254..1682961 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CDIF27640_RS08105 () | 1682974..1683843 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CDIF27640_RS08110 () | 1684463..1684969 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF27640_RS08115 () | 1685045..1685593 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDIF27640_RS08120 () | 1685605..1685946 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDIF27640_RS08125 () | 1686123..1686326 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDIF27640_RS08130 () | 1686374..1687183 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CDIF27640_RS08135 () | 1687230..1687439 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF27640_RS08140 () | 1687449..1687823 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF27640_RS08145 () | 1687899..1688096 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27640_RS08150 () | 1688127..1688519 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CDIF27640_RS19835 () | 1688500..1688649 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDIF27640_RS08155 () | 1688720..1689157 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF27640_RS08160 () | 1689169..1690335 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CDIF27640_RS08165 () | 1690350..1690685 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDIF27640_RS08170 () | 1690738..1691310 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF27640_RS08175 () | 1691333..1691905 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF27640_RS08180 () | 1691905..1693863 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CDIF27640_RS08185 () | 1693875..1696292 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CDIF27640_RS08190 () | 1696574..1696900 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDIF27640_RS08195 () | 1696849..1698219 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CDIF27640_RS19890 () | 1698243..1698380 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CDIF27640_RS08200 () | 1698373..1698852 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF27640_RS08205 () | 1699135..1699684 | + | 550 | Protein_1483 | Bro-N domain-containing protein | - |
| CDIF27640_RS08210 () | 1699879..1700853 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CDIF27640_RS19840 () | 1700874..1701383 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF27640_RS08225 () | 1701453..1702145 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CDIF27640_RS08230 () | 1702123..1703376 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CDIF27640_RS08235 () | 1703382..1704824 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CDIF27640_RS08240 () | 1704814..1706349 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CDIF27640_RS08245 () | 1706351..1706599 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDIF27640_RS08250 () | 1706667..1707230 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CDIF27640_RS08255 () | 1707242..1708132 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CDIF27640_RS08260 () | 1708151..1708384 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CDIF27640_RS08265 () | 1708394..1708795 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF27640_RS08270 () | 1708789..1709136 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDIF27640_RS08275 () | 1709136..1709426 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CDIF27640_RS08280 () | 1709536..1710342 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CDIF27640_RS08290 () | 1710691..1711128 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CDIF27640_RS08295 () | 1711121..1711297 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CDIF27640_RS08300 () | 1711298..1712608 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CDIF27640_RS08305 () | 1712625..1713095 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CDIF27640_RS08310 () | 1713154..1713981 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CDIF27640_RS08315 () | 1714053..1714493 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF27640_RS08325 () | 1714834..1714995 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1714915..1715054 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1714915..1715054 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1715399..1715447 | - | 49 | NuclAT_4 | - | - |
| - () | 1715399..1715447 | - | 49 | NuclAT_5 | - | - |
| CDIF27640_RS08330 () | 1716332..1716520 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDIF27640_RS08335 () | 1716639..1717505 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CDIF27640_RS08345 () | 1718370..1718897 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CDIF27640_RS08350 () | 1719035..1719802 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CDIF27640_RS08355 () | 1719868..1722240 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CDIF27640_RS08360 () | 1722257..1722946 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF27640_RS08365 () | 1722939..1724831 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF27640_RS08370 () | 1724845..1725105 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CDIF27640_RS08375 () | 1725110..1725529 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CDIF27640_RS08380 () | 1725530..1726579 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CDIF27640_RS08385 () | 1726572..1727189 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDIF27640_RS08390 () | 1727201..1728226 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CDIF27640_RS08395 () | 1728243..1729769 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CDIF27640_RS08400 () | 1729784..1730077 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CDIF27640_RS08405 () | 1730077..1730259 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CDIF27640_RS08410 () | 1730293..1730859 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CDIF27640_RS08415 () | 1730890..1731180 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CDIF27640_RS08420 () | 1731184..1731441 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDIF27640_RS08425 () | 1731702..1732565 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CDIF27640_RS08430 () | 1732644..1733456 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF27640_RS08435 () | 1733550..1735949 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CDIF27640_RS08440 () | 1735990..1736175 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF27640_RS08445 () | 1736870..1737547 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CDIF27640_RS08450 () | 1737721..1739757 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CDIF27640_RS08455 () | 1739948..1740514 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDIF27640_RS08460 () | 1740798..1741325 | + | 528 | Protein_1530 | alpha/beta fold hydrolase | - |
| CDIF27640_RS08470 () | 1741957..1742064 | + | 108 | WP_009889455.1 | transposase | - |
| CDIF27640_RS08475 () | 1742066..1743183 | + | 1118 | Protein_1532 | IS200-IS605 family transposase ISBth17 | Transposase |
| CDIF27640_RS08480 () | 1743248..1743709 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CDIF27640_RS08485 () | 1744174..1745388 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF27640_RS08490 () | 1745808..1746329 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CDIF27640_RS08495 () | 1746685..1747482 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDIF27640_RS08500 () | 1747592..1748182 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF27640_RS08505 () | 1748248..1749945 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CDIF27640_RS08510 () | 1750159..1750998 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |