MGE detailed information
MGE type: Prophage MGE length: 21529 bp
Accession: NZ_CP012320 Location: 2502581..2524109 Organism: Clostridioides difficile strain DSM 28196 Replicon: chromosome
Accession: NZ_CP012320 Location: 2502581..2524109 Organism: Clostridioides difficile strain DSM 28196 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28196_RS11960 () | 2499102..2499803 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF28196_RS11965 () | 2499796..2500119 | + | 324 | WP_011861511.1 | AzlD domain-containing protein | - |
| CDIF28196_RS11970 () | 2500325..2502385 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CDIF28196_RS11980 () | 2502581..2503273 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF28196_RS11985 () | 2503885..2504259 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28196_RS11990 () | 2504478..2504711 | + | 234 | WP_003423177.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28196_RS11995 () | 2504695..2505108 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CDIF28196_RS12000 () | 2505127..2505423 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CDIF28196_RS12005 () | 2505706..2506023 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CDIF28196_RS12010 () | 2506159..2506623 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CDIF28196_RS12020 () | 2506951..2507112 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF28196_RS12025 () | 2507164..2507977 | - | 814 | Protein_2214 | toxin Bro | - |
| CDIF28196_RS19830 () | 2508097..2508249 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CDIF28196_RS12030 () | 2509658..2510581 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - () | 2510725..2510854 | + | 130 | NuclAT_0 | - | Antitoxin Detail |
| CDIF28196_RS12035 () | 2510775..2510927 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF28196_RS12040 () | 2511201..2511524 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF28196_RS12045 () | 2511560..2511814 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF28196_RS12055 () | 2512250..2512768 | - | 519 | Protein_2220 | transposase | - |
| CDIF28196_RS12060 () | 2513058..2513433 | - | 376 | Protein_2221 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28196_RS12065 () | 2513538..2513915 | - | 378 | WP_011861518.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28196_RS12070 () | 2514719..2515213 | + | 495 | WP_011861519.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF28196_RS12075 () | 2515602..2515772 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CDIF28196_RS12080 () | 2516249..2516438 | - | 190 | Protein_2225 | transposase | - |
| CDIF28196_RS12085 () | 2516600..2516950 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CDIF28196_RS12090 () | 2516952..2517152 | + | 201 | WP_003423163.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28196_RS12095 () | 2517475..2517651 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF28196_RS12100 () | 2517876..2518076 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF28196_RS12105 () | 2518711..2519523 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF28196_RS12110 () | 2519533..2520324 | + | 792 | WP_011861521.1 | ABC transporter permease | - |
| CDIF28196_RS12115 () | 2520326..2521021 | + | 696 | WP_011861522.1 | ATP-binding cassette domain-containing protein | - |
| CDIF28196_RS12120 () | 2521008..2521739 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF28196_RS12125 () | 2522053..2522853 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF28196_RS12130 () | 2523393..2524109 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CDIF28196_RS12135 () | 2524078..2525667 | + | 1590 | WP_021361920.1 | sensor histidine kinase | - |
| CDIF28196_RS12140 () | 2525979..2527481 | - | 1503 | WP_004454621.1 | phosphoglucomutase | - |
| CDIF28196_RS12145 () | 2527591..2528256 | - | 666 | WP_003430699.1 | ribulose-phosphate 3-epimerase | - |
| CDIF28196_RS12150 () | 2528286..2528732 | - | 447 | WP_003430700.1 | ribose 5-phosphate isomerase B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.006 |