MGE detailed information
MGE type: Prophage MGE length: 48181 bp
Accession: NZ_LN614756 Location: 3337900..3386080 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Accession: NZ_LN614756 Location: 3337900..3386080 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630DERM_RS15480 () | 3333086..3334240 | + | 1155 | WP_003439713.1 | GGDEF domain-containing protein | - |
| CD630DERM_RS15485 () | 3334321..3336039 | - | 1719 | WP_011861730.1 | putative 2-aminoethylphosphonate ABC transporter permease subunit | - |
| CD630DERM_RS15490 () | 3336044..3336925 | - | 882 | Protein_2954 | ATP-binding cassette domain-containing protein | - |
| - () | 3337427..3337573 | + | 147 | NuclAT_2 | - | - |
| - () | 3337427..3337577 | + | 151 | NuclAT_1 | - | - |
| CD630DERM_RS21030 () | 3337499..3337642 | - | 144 | WP_011861731.1 | hypothetical protein | - |
| CD630DERM_RS15500 () | 3337900..3338088 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CD630DERM_RS15505 () | 3338335..3339039 | - | 705 | WP_011861732.1 | hypothetical protein | - |
| CD630DERM_RS15510 () | 3339041..3339472 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CD630DERM_RS15515 () | 3339490..3340053 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| CD630DERM_RS15520 () | 3340599..3340895 | - | 297 | WP_011861049.1 | hypothetical protein | - |
| CD630DERM_RS15525 () | 3340912..3341727 | - | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD630DERM_RS15530 () | 3341724..3341984 | - | 261 | WP_011861047.1 | phage holin family protein | - |
| CD630DERM_RS15535 () | 3342004..3342234 | - | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CD630DERM_RS15540 () | 3342269..3342451 | - | 183 | WP_011861045.1 | hypothetical protein | - |
| CD630DERM_RS15545 () | 3342451..3342744 | - | 294 | WP_011861044.1 | hypothetical protein | - |
| CD630DERM_RS15550 () | 3342761..3344458 | - | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CD630DERM_RS15555 () | 3344476..3345279 | - | 804 | WP_011861042.1 | phage tail protein | - |
| CD630DERM_RS15560 () | 3345291..3345908 | - | 618 | WP_011861041.1 | YmfQ family protein | - |
| CD630DERM_RS15565 () | 3345901..3346950 | - | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CD630DERM_RS15570 () | 3346951..3347370 | - | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CD630DERM_RS15575 () | 3347375..3347635 | - | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CD630DERM_RS15580 () | 3347649..3349619 | - | 1971 | WP_011861038.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CD630DERM_RS15585 () | 3349612..3350301 | - | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD630DERM_RS15590 () | 3350317..3352668 | - | 2352 | WP_011861036.1 | tape measure protein | - |
| CD630DERM_RS20325 () | 3352739..3353308 | - | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CD630DERM_RS15600 () | 3353352..3353912 | - | 561 | WP_011861034.1 | lipoprotein | - |
| - () | 3355073..3355178 | + | 106 | NuclAT_12 | - | - |
| - () | 3355073..3355178 | + | 106 | NuclAT_14 | - | - |
| - () | 3355523..3355656 | + | 134 | NuclAT_6 | - | Antitoxin Detail |
| - () | 3355523..3355656 | + | 134 | NuclAT_8 | - | Antitoxin Detail |
| CD630DERM_RS21035 () | 3355576..3355737 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| CD630DERM_RS15610 () | 3356078..3356518 | - | 441 | WP_003429853.1 | phage portal protein | - |
| CD630DERM_RS15615 () | 3356590..3357060 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| CD630DERM_RS15620 () | 3357077..3358387 | - | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CD630DERM_RS21040 () | 3358389..3358565 | - | 177 | WP_011861031.1 | hypothetical protein | - |
| CD630DERM_RS15630 () | 3358558..3358995 | - | 438 | WP_009901504.1 | hypothetical protein | - |
| CD630DERM_RS15635 () | 3358988..3359413 | - | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CD630DERM_RS15640 () | 3359413..3359760 | - | 348 | WP_003429844.1 | hypothetical protein | - |
| CD630DERM_RS15645 () | 3359754..3360155 | - | 402 | WP_009888836.1 | hypothetical protein | - |
| CD630DERM_RS15650 () | 3360165..3360398 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CD630DERM_RS15655 () | 3360398..3361297 | - | 900 | WP_011861029.1 | phage capsid protein | - |
| CD630DERM_RS15660 () | 3361309..3361872 | - | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CD630DERM_RS15665 () | 3362182..3362424 | - | 243 | WP_009901430.1 | hypothetical protein | - |
| CD630DERM_RS15670 () | 3362390..3363883 | - | 1494 | WP_003429838.1 | minor capsid protein | - |
| CD630DERM_RS15675 () | 3363873..3365312 | - | 1440 | WP_011861027.1 | phage portal protein | - |
| CD630DERM_RS15680 () | 3365318..3366571 | - | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CD630DERM_RS15685 () | 3366549..3367241 | - | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CD630DERM_RS15690 () | 3367311..3367538 | - | 228 | WP_009894744.1 | hypothetical protein | - |
| CD630DERM_RS15695 () | 3367662..3367979 | + | 318 | WP_009894743.1 | hypothetical protein | - |
| CD630DERM_RS15700 () | 3367959..3368147 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| CD630DERM_RS15705 () | 3368224..3368835 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| CD630DERM_RS21045 () | 3368835..3369008 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| CD630DERM_RS15720 () | 3369827..3370990 | - | 1164 | WP_032506905.1 | XRE family transcriptional regulator | - |
| CD630DERM_RS15725 () | 3371009..3371764 | - | 756 | WP_011861735.1 | hypothetical protein | - |
| CD630DERM_RS15735 () | 3372085..3372573 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CD630DERM_RS15740 () | 3372667..3373407 | - | 741 | WP_011861736.1 | anti-repressor protein | - |
| CD630DERM_RS15745 () | 3373470..3373877 | - | 408 | WP_011861737.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CD630DERM_RS15750 () | 3373867..3374265 | - | 399 | WP_011861738.1 | hypothetical protein | - |
| CD630DERM_RS15755 () | 3374408..3374734 | - | 327 | WP_011861739.1 | peptide chain release factor-like protein | - |
| CD630DERM_RS15760 () | 3374805..3375176 | - | 372 | WP_011861740.1 | hypothetical protein | - |
| CD630DERM_RS21050 () | 3375169..3375342 | - | 174 | WP_011861741.1 | hypothetical protein | - |
| CD630DERM_RS15770 () | 3375351..3375734 | - | 384 | WP_011861742.1 | DUF1653 domain-containing protein | - |
| CD630DERM_RS15775 () | 3375746..3376741 | - | 996 | WP_011861743.1 | nucleoid-associated protein | - |
| CD630DERM_RS15780 () | 3376836..3377111 | - | 276 | WP_011861744.1 | hypothetical protein | - |
| CD630DERM_RS20735 () | 3377163..3377321 | - | 159 | WP_018112752.1 | hypothetical protein | - |
| CD630DERM_RS15790 () | 3377440..3377613 | - | 174 | WP_021359693.1 | DUF3797 domain-containing protein | - |
| CD630DERM_RS21055 () | 3377610..3377750 | - | 141 | WP_021359694.1 | hypothetical protein | - |
| CD630DERM_RS15800 () | 3377719..3378099 | - | 381 | WP_011861745.1 | hypothetical protein | - |
| CD630DERM_RS15805 () | 3378103..3378468 | - | 366 | WP_021398171.1 | hypothetical protein | - |
| CD630DERM_RS15810 () | 3378465..3378728 | - | 264 | WP_011861747.1 | hypothetical protein | - |
| CD630DERM_RS15815 () | 3378802..3379218 | - | 417 | WP_011861748.1 | single-stranded DNA-binding protein | - |
| CD630DERM_RS15820 () | 3379234..3379407 | - | 174 | WP_011861749.1 | resolvase | - |
| CD630DERM_RS15825 () | 3379467..3380417 | - | 951 | WP_011861750.1 | DnaD domain protein | - |
| CD630DERM_RS20005 () | 3380426..3381016 | - | 591 | WP_011861751.1 | ERF family protein | - |
| CD630DERM_RS15835 () | 3381026..3381535 | - | 510 | WP_011861752.1 | siphovirus Gp157 family protein | - |
| CD630DERM_RS15840 () | 3381621..3381938 | - | 318 | WP_011861753.1 | hypothetical protein | - |
| CD630DERM_RS15845 () | 3382038..3382265 | - | 228 | WP_021391119.1 | hypothetical protein | - |
| CD630DERM_RS15850 () | 3382240..3382428 | - | 189 | WP_011861755.1 | hypothetical protein | - |
| CD630DERM_RS15855 () | 3382494..3383288 | - | 795 | WP_011861756.1 | ORF6N domain-containing protein | - |
| CD630DERM_RS15860 () | 3383336..3383557 | - | 222 | WP_011861757.1 | helix-turn-helix transcriptional regulator | - |
| CD630DERM_RS15865 () | 3383711..3384166 | + | 456 | WP_011861758.1 | helix-turn-helix transcriptional regulator | - |
| CD630DERM_RS15870 () | 3384184..3384657 | + | 474 | WP_011861759.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CD630DERM_RS15875 () | 3384722..3386080 | + | 1359 | WP_011861760.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CD630DERM_RS20740 () | 3386103..3386219 | - | 117 | Protein_3030 | putative 2-aminoethylphosphonate ABC transporter ATP-binding protein | - |
| CD630DERM_RS15880 () | 3386315..3387364 | - | 1050 | WP_011861761.1 | putative 2-aminoethylphosphonate ABC transporter substrate-binding protein | - |
| CD630DERM_RS15885 () | 3387641..3388309 | - | 669 | WP_009891221.1 | V-type ATP synthase subunit D | - |
| CD630DERM_RS15890 () | 3388315..3389688 | - | 1374 | WP_003422669.1 | V-type ATP synthase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10081, TA10084, TA10172 | NC_009089 | 3375898..3428859 | 0.002 |