MGE detailed information
MGE type: Prophage MGE length: 67138 bp
Accession: NZ_CP107110 Location: 1684645..1751782 Organism: Clostridioides difficile strain R_cdtRstop8 Replicon: chromosome
Accession: NZ_CP107110 Location: 1684645..1751782 Organism: Clostridioides difficile strain R_cdtRstop8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM29_RS07845 (OGM29_07845) | 1679750..1680511 | + | 762 | WP_009889424.1 | SprT family zinc-dependent metalloprotease | - |
| OGM29_RS07850 (OGM29_07850) | 1681042..1681281 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| OGM29_RS07855 (OGM29_07855) | 1681551..1682546 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| OGM29_RS07860 (OGM29_07860) | 1682599..1684287 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| OGM29_RS07865 (OGM29_07865) | 1684645..1685775 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| OGM29_RS07870 (OGM29_07870) | 1685854..1686561 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| OGM29_RS07875 (OGM29_07875) | 1686574..1687443 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| OGM29_RS07880 (OGM29_07880) | 1688063..1688569 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM29_RS07885 (OGM29_07885) | 1688645..1689193 | - | 549 | WP_009893126.1 | helix-turn-helix transcriptional regulator | - |
| OGM29_RS07890 (OGM29_07890) | 1689205..1689546 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| OGM29_RS07895 (OGM29_07895) | 1689723..1689926 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| OGM29_RS07900 (OGM29_07900) | 1689974..1690783 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| OGM29_RS07905 (OGM29_07905) | 1690830..1691039 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| OGM29_RS07910 (OGM29_07910) | 1691049..1691423 | - | 375 | WP_003433505.1 | DUF6173 family protein | - |
| OGM29_RS07915 (OGM29_07915) | 1691499..1691696 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| OGM29_RS07920 (OGM29_07920) | 1691727..1692119 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| OGM29_RS07925 (OGM29_07925) | 1692100..1692249 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| OGM29_RS07930 (OGM29_07930) | 1692320..1692757 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| OGM29_RS07935 (OGM29_07935) | 1692769..1693935 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| OGM29_RS07940 (OGM29_07940) | 1693950..1694285 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| OGM29_RS07945 (OGM29_07945) | 1694338..1694910 | + | 573 | WP_003429822.1 | sigma factor | - |
| OGM29_RS07950 (OGM29_07950) | 1694933..1695505 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| OGM29_RS07955 (OGM29_07955) | 1695505..1697463 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| OGM29_RS07960 (OGM29_07960) | 1697475..1699892 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| OGM29_RS07965 (OGM29_07965) | 1700174..1700500 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| OGM29_RS07970 (OGM29_07970) | 1700449..1701819 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| OGM29_RS07975 (OGM29_07975) | 1701843..1701980 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| OGM29_RS07980 (OGM29_07980) | 1701973..1702452 | + | 480 | WP_009888825.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM29_RS07985 (OGM29_07985) | 1702735..1703187 | + | 453 | WP_009888826.1 | phage antirepressor | - |
| OGM29_RS07990 (OGM29_07990) | 1703479..1704453 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| OGM29_RS07995 (OGM29_07995) | 1704474..1704983 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| OGM29_RS08000 (OGM29_08000) | 1705053..1705745 | + | 693 | WP_009888829.1 | phage terminase small subunit | - |
| OGM29_RS08005 (OGM29_08005) | 1705723..1706976 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| OGM29_RS08010 (OGM29_08010) | 1706982..1708424 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| OGM29_RS08015 (OGM29_08015) | 1708414..1709949 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| OGM29_RS08020 (OGM29_08020) | 1709951..1710199 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| OGM29_RS08025 (OGM29_08025) | 1710267..1710830 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| OGM29_RS08030 (OGM29_08030) | 1710842..1711732 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| OGM29_RS08035 (OGM29_08035) | 1711751..1711984 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| OGM29_RS08040 (OGM29_08040) | 1711994..1712395 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| OGM29_RS08045 (OGM29_08045) | 1712389..1712736 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| OGM29_RS08050 (OGM29_08050) | 1712736..1713026 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| OGM29_RS08055 (OGM29_08055) | 1713136..1713942 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| OGM29_RS08060 (OGM29_08060) | 1714291..1714728 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| OGM29_RS08065 (OGM29_08065) | 1714721..1714897 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| OGM29_RS08070 (OGM29_08070) | 1714898..1716208 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| OGM29_RS08075 (OGM29_08075) | 1716225..1716695 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| OGM29_RS08080 (OGM29_08080) | 1716754..1717581 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| OGM29_RS08085 (OGM29_08085) | 1717653..1718093 | + | 441 | WP_003429853.1 | phage portal protein | - |
| OGM29_RS08090 (OGM29_08090) | 1718434..1718595 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1718515..1718654 | - | 140 | - | - | Antitoxin Detail |
| OGM29_RS08095 (OGM29_08095) | 1719932..1720120 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| OGM29_RS08100 (OGM29_08100) | 1720239..1721105 | + | 867 | WP_009888845.1 | BRO family protein | - |
| OGM29_RS08105 (OGM29_08105) | 1721158..1721292 | + | 135 | WP_009888846.1 | hypothetical protein | - |
| OGM29_RS08110 (OGM29_08110) | 1721970..1722497 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| OGM29_RS08115 (OGM29_08115) | 1722635..1723402 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| OGM29_RS08120 (OGM29_08120) | 1723468..1725840 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| OGM29_RS08125 (OGM29_08125) | 1725857..1726546 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OGM29_RS08130 (OGM29_08130) | 1726539..1728431 | + | 1893 | WP_009893140.1 | NlpC/P60 family protein | - |
| OGM29_RS08135 (OGM29_08135) | 1728445..1728705 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| OGM29_RS08140 (OGM29_08140) | 1728710..1729129 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| OGM29_RS08145 (OGM29_08145) | 1729130..1730179 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| OGM29_RS08150 (OGM29_08150) | 1730172..1730789 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| OGM29_RS08155 (OGM29_08155) | 1730801..1731826 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| OGM29_RS08160 (OGM29_08160) | 1731843..1733369 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| OGM29_RS08165 (OGM29_08165) | 1733384..1733677 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| OGM29_RS08170 (OGM29_08170) | 1733677..1733859 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| OGM29_RS08175 (OGM29_08175) | 1733893..1734459 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| OGM29_RS08180 (OGM29_08180) | 1734490..1734780 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| OGM29_RS08185 (OGM29_08185) | 1734784..1735041 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| OGM29_RS08190 (OGM29_08190) | 1735302..1736165 | + | 864 | WP_003429958.1 | Abi family protein | - |
| OGM29_RS08195 (OGM29_08195) | 1736244..1737056 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM29_RS08200 (OGM29_08200) | 1737150..1739549 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| OGM29_RS08205 (OGM29_08205) | 1739590..1739775 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| OGM29_RS08210 (OGM29_08210) | 1740004..1740132 | - | 129 | WP_003433683.1 | hypothetical protein | - |
| OGM29_RS08215 (OGM29_08215) | 1740470..1741147 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| OGM29_RS08220 (OGM29_08220) | 1741321..1743357 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| OGM29_RS08225 (OGM29_08225) | 1743548..1744114 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| OGM29_RS08230 (OGM29_08230) | 1744398..1744934 | + | 537 | WP_009889454.1 | alpha/beta fold hydrolase | - |
| OGM29_RS08235 (OGM29_08235) | 1745566..1745664 | + | 99 | Protein_1535 | transposase | - |
| OGM29_RS08240 (OGM29_08240) | 1745666..1746783 | + | 1118 | Protein_1536 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| OGM29_RS08245 (OGM29_08245) | 1746902..1747309 | + | 408 | Protein_1537 | alpha/beta hydrolase | - |
| OGM29_RS08250 (OGM29_08250) | 1747774..1748988 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| OGM29_RS08255 (OGM29_08255) | 1749408..1749929 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| OGM29_RS08260 (OGM29_08260) | 1750285..1751082 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| OGM29_RS08265 (OGM29_08265) | 1751192..1751782 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| OGM29_RS08270 (OGM29_08270) | 1751848..1753545 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| OGM29_RS08275 (OGM29_08275) | 1753759..1754598 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|