MGE detailed information
MGE type: Prophage MGE length: 67138 bp
Accession: NZ_CP107112 Location: 1684639..1751776 Organism: Clostridioides difficile strain R_cdtRKO8.1 Replicon: chromosome
Accession: NZ_CP107112 Location: 1684639..1751776 Organism: Clostridioides difficile strain R_cdtRKO8.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM25_RS07860 (OGM25_07860) | 1679744..1680505 | + | 762 | WP_009889424.1 | SprT family zinc-dependent metalloprotease | - |
| OGM25_RS07865 (OGM25_07865) | 1681036..1681275 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| OGM25_RS07870 (OGM25_07870) | 1681545..1682540 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| OGM25_RS07875 (OGM25_07875) | 1682593..1684281 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| OGM25_RS07880 (OGM25_07880) | 1684639..1685769 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| OGM25_RS07885 (OGM25_07885) | 1685848..1686555 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| OGM25_RS07890 (OGM25_07890) | 1686568..1687437 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| OGM25_RS07895 (OGM25_07895) | 1688057..1688563 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM25_RS07900 (OGM25_07900) | 1688639..1689187 | - | 549 | WP_009893126.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS07905 (OGM25_07905) | 1689199..1689540 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| OGM25_RS07910 (OGM25_07910) | 1689717..1689920 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS07915 (OGM25_07915) | 1689968..1690777 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| OGM25_RS07920 (OGM25_07920) | 1690824..1691033 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| OGM25_RS07925 (OGM25_07925) | 1691043..1691417 | - | 375 | WP_003433505.1 | DUF6173 family protein | - |
| OGM25_RS07930 (OGM25_07930) | 1691520..1691690 | + | 171 | WP_234704199.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS07935 (OGM25_07935) | 1691721..1692113 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS07940 (OGM25_07940) | 1692094..1692243 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| OGM25_RS07945 (OGM25_07945) | 1692314..1692751 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| OGM25_RS07950 (OGM25_07950) | 1692763..1693929 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| OGM25_RS07955 (OGM25_07955) | 1693944..1694279 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| OGM25_RS07960 (OGM25_07960) | 1694332..1694904 | + | 573 | WP_003429822.1 | sigma factor | - |
| OGM25_RS07965 (OGM25_07965) | 1694927..1695499 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| OGM25_RS07970 (OGM25_07970) | 1695499..1697457 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| OGM25_RS07975 (OGM25_07975) | 1697469..1699886 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| OGM25_RS07980 (OGM25_07980) | 1700168..1700494 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| OGM25_RS07985 (OGM25_07985) | 1700443..1701813 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| OGM25_RS07990 (OGM25_07990) | 1701837..1701974 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| OGM25_RS07995 (OGM25_07995) | 1701967..1702446 | + | 480 | WP_009888825.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM25_RS08000 (OGM25_08000) | 1702729..1703181 | + | 453 | WP_009888826.1 | phage antirepressor | - |
| OGM25_RS08005 (OGM25_08005) | 1703473..1704447 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| OGM25_RS08010 (OGM25_08010) | 1704468..1704977 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| OGM25_RS08015 (OGM25_08015) | 1705047..1705739 | + | 693 | WP_009888829.1 | phage terminase small subunit | - |
| OGM25_RS08020 (OGM25_08020) | 1705717..1706970 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| OGM25_RS08025 (OGM25_08025) | 1706976..1708418 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| OGM25_RS08030 (OGM25_08030) | 1708408..1709943 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| OGM25_RS08035 (OGM25_08035) | 1709945..1710193 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| OGM25_RS08040 (OGM25_08040) | 1710261..1710824 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| OGM25_RS08045 (OGM25_08045) | 1710836..1711726 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| OGM25_RS08050 (OGM25_08050) | 1711745..1711978 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| OGM25_RS08055 (OGM25_08055) | 1711988..1712389 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| OGM25_RS08060 (OGM25_08060) | 1712383..1712730 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| OGM25_RS08065 (OGM25_08065) | 1712730..1713020 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| OGM25_RS08070 (OGM25_08070) | 1713130..1713936 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| OGM25_RS08075 (OGM25_08075) | 1714285..1714722 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| OGM25_RS08080 (OGM25_08080) | 1714715..1714891 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| OGM25_RS08085 (OGM25_08085) | 1714892..1716202 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| OGM25_RS08090 (OGM25_08090) | 1716219..1716689 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| OGM25_RS08095 (OGM25_08095) | 1716748..1717575 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| OGM25_RS08100 (OGM25_08100) | 1717647..1718087 | + | 441 | WP_003429853.1 | phage portal protein | - |
| OGM25_RS08105 (OGM25_08105) | 1718428..1718589 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1718509..1718648 | - | 140 | - | - | Antitoxin Detail |
| OGM25_RS08110 (OGM25_08110) | 1719926..1720114 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| OGM25_RS08115 (OGM25_08115) | 1720233..1721099 | + | 867 | WP_009888845.1 | BRO family protein | - |
| OGM25_RS08120 (OGM25_08120) | 1721152..1721286 | + | 135 | WP_009888846.1 | hypothetical protein | - |
| OGM25_RS08125 (OGM25_08125) | 1721964..1722491 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| OGM25_RS08130 (OGM25_08130) | 1722629..1723396 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| OGM25_RS08135 (OGM25_08135) | 1723462..1725834 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| OGM25_RS08140 (OGM25_08140) | 1725851..1726540 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OGM25_RS08145 (OGM25_08145) | 1726533..1728425 | + | 1893 | WP_009893140.1 | NlpC/P60 family protein | - |
| OGM25_RS08150 (OGM25_08150) | 1728439..1728699 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| OGM25_RS08155 (OGM25_08155) | 1728704..1729123 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| OGM25_RS08160 (OGM25_08160) | 1729124..1730173 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| OGM25_RS08165 (OGM25_08165) | 1730166..1730783 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| OGM25_RS08170 (OGM25_08170) | 1730795..1731820 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| OGM25_RS08175 (OGM25_08175) | 1731837..1733363 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| OGM25_RS08180 (OGM25_08180) | 1733378..1733671 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| OGM25_RS08185 (OGM25_08185) | 1733671..1733853 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| OGM25_RS08190 (OGM25_08190) | 1733887..1734453 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| OGM25_RS08195 (OGM25_08195) | 1734484..1734774 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| OGM25_RS08200 (OGM25_08200) | 1734778..1735035 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| OGM25_RS08205 (OGM25_08205) | 1735296..1736159 | + | 864 | WP_003429958.1 | Abi family protein | - |
| OGM25_RS08210 (OGM25_08210) | 1736238..1737050 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM25_RS08215 (OGM25_08215) | 1737144..1739543 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| OGM25_RS08220 (OGM25_08220) | 1739584..1739769 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| OGM25_RS08225 (OGM25_08225) | 1739998..1740126 | - | 129 | WP_003433683.1 | hypothetical protein | - |
| OGM25_RS08230 (OGM25_08230) | 1740464..1741141 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| OGM25_RS08235 (OGM25_08235) | 1741315..1743351 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| OGM25_RS08240 (OGM25_08240) | 1743542..1744108 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| OGM25_RS08245 (OGM25_08245) | 1744392..1744928 | + | 537 | WP_009889454.1 | alpha/beta fold hydrolase | - |
| OGM25_RS08250 (OGM25_08250) | 1745560..1745658 | + | 99 | Protein_1538 | transposase | - |
| OGM25_RS08255 (OGM25_08255) | 1745660..1746777 | + | 1118 | Protein_1539 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| OGM25_RS08260 (OGM25_08260) | 1746896..1747303 | + | 408 | Protein_1540 | alpha/beta hydrolase | - |
| OGM25_RS08265 (OGM25_08265) | 1747768..1748982 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS08270 (OGM25_08270) | 1749402..1749923 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| OGM25_RS08275 (OGM25_08275) | 1750279..1751076 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| OGM25_RS08280 (OGM25_08280) | 1751186..1751776 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| OGM25_RS08285 (OGM25_08285) | 1751842..1753539 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| OGM25_RS08290 (OGM25_08290) | 1753753..1754592 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|