MGE detailed information
MGE type: Prophage MGE length: 76363 bp
Accession: NZ_CP019858 Location: 1149271..1225633 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Accession: NZ_CP019858 Location: 1149271..1225633 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29688_RS05615 () | 1145520..1146842 | - | 1323 | WP_009888874.1 | polysaccharide biosynthesis protein | - |
| CDIF29688_RS05620 () | 1146893..1147687 | - | 795 | WP_021390121.1 | histidinol-phosphatase HisJ family protein | - |
| CDIF29688_RS05625 () | 1147797..1149242 | + | 1446 | WP_009896029.1 | PLP-dependent aminotransferase family protein | - |
| CDIF29688_RS05630 () | 1149271..1149480 | + | 210 | WP_003418943.1 | DUF896 domain-containing protein | - |
| CDIF29688_RS05635 () | 1149500..1150894 | + | 1395 | WP_003437993.1 | aminopeptidase | - |
| CDIF29688_RS05640 () | 1151134..1151319 | + | 186 | Protein_984 | winged helix-turn-helix transcriptional regulator | - |
| CDIF29688_RS05645 () | 1151428..1152594 | - | 1167 | WP_021361295.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF29688_RS05650 () | 1152732..1152938 | - | 207 | WP_021361292.1 | hypothetical protein | - |
| CDIF29688_RS05655 () | 1152997..1153218 | - | 222 | WP_015984870.1 | helix-turn-helix domain-containing protein | - |
| CDIF29688_RS20225 () | 1153502..1153639 | + | 138 | WP_021362425.1 | hypothetical protein | - |
| CDIF29688_RS05660 () | 1153676..1154071 | - | 396 | WP_015984871.1 | helix-turn-helix domain-containing protein | - |
| CDIF29688_RS05665 () | 1154250..1154483 | + | 234 | WP_021362426.1 | DUF739 family protein | - |
| CDIF29688_RS05670 () | 1154483..1155271 | + | 789 | WP_015984873.1 | phage regulatory protein | - |
| CDIF29688_RS20300 () | 1155328..1155465 | + | 138 | WP_021396637.1 | hypothetical protein | - |
| CDIF29688_RS05675 () | 1155477..1155644 | - | 168 | WP_021396640.1 | Arc family DNA-binding protein | - |
| CDIF29688_RS05680 () | 1155797..1155943 | + | 147 | WP_015984875.1 | hypothetical protein | - |
| CDIF29688_RS05685 () | 1155936..1156574 | + | 639 | WP_015984876.1 | antirepressor | - |
| CDIF29688_RS05690 () | 1156633..1157013 | + | 381 | WP_015984877.1 | hypothetical protein | - |
| CDIF29688_RS20230 () | 1157003..1157152 | - | 150 | WP_016056357.1 | hypothetical protein | - |
| CDIF29688_RS05695 () | 1157214..1157411 | + | 198 | WP_015984879.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29688_RS05700 () | 1157450..1157884 | + | 435 | WP_021368259.1 | helix-turn-helix domain-containing protein | - |
| CDIF29688_RS05705 () | 1158012..1158200 | + | 189 | WP_021368261.1 | hypothetical protein | - |
| CDIF29688_RS20235 () | 1158232..1158375 | + | 144 | WP_021362431.1 | hypothetical protein | - |
| CDIF29688_RS05710 () | 1158648..1158806 | + | 159 | WP_015984882.1 | Arc family DNA-binding protein | - |
| CDIF29688_RS05715 () | 1158806..1159033 | + | 228 | WP_009894686.1 | hypothetical protein | - |
| CDIF29688_RS05720 () | 1159131..1159445 | + | 315 | WP_015984883.1 | hypothetical protein | - |
| CDIF29688_RS05725 () | 1159529..1160038 | + | 510 | WP_015984884.1 | siphovirus Gp157 family protein | - |
| CDIF29688_RS05730 () | 1160048..1160656 | + | 609 | WP_015984885.1 | ERF family protein | - |
| CDIF29688_RS05735 () | 1160666..1161547 | + | 882 | WP_021367673.1 | DnaD domain protein | - |
| CDIF29688_RS05740 () | 1161608..1161781 | + | 174 | WP_015984887.1 | hypothetical protein | - |
| CDIF29688_RS05745 () | 1161797..1162204 | + | 408 | WP_015981535.1 | single-stranded DNA-binding protein | - |
| CDIF29688_RS05750 () | 1162278..1162472 | + | 195 | Protein_1010 | hypothetical protein | - |
| CDIF29688_RS05755 () | 1162524..1162781 | + | 258 | WP_021378788.1 | hypothetical protein | - |
| CDIF29688_RS05760 () | 1162795..1163160 | + | 366 | WP_015984889.1 | hypothetical protein | - |
| CDIF29688_RS05765 () | 1163278..1163613 | + | 336 | WP_015994376.1 | hypothetical protein | - |
| CDIF29688_RS05770 () | 1163721..1164794 | + | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CDIF29688_RS05775 () | 1164874..1165083 | + | 210 | WP_015984893.1 | hypothetical protein | - |
| CDIF29688_RS05780 () | 1165095..1166099 | + | 1005 | WP_015984894.1 | nucleoid-associated protein | - |
| CDIF29688_RS05785 () | 1166181..1166510 | + | 330 | WP_015994378.1 | hypothetical protein | - |
| CDIF29688_RS05790 () | 1166547..1166918 | + | 372 | WP_015994379.1 | hypothetical protein | - |
| CDIF29688_RS05795 () | 1166921..1167103 | + | 183 | WP_015994380.1 | hypothetical protein | - |
| CDIF29688_RS05800 () | 1167183..1167524 | + | 342 | WP_021378977.1 | peptide chain release factor-like protein | - |
| CDIF29688_RS05810 () | 1167650..1168057 | + | 408 | WP_015984897.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF29688_RS05815 () | 1168159..1169007 | + | 849 | WP_009894735.1 | ORF6C domain-containing protein | - |
| CDIF29688_RS05820 () | 1169110..1169598 | + | 489 | WP_009894737.1 | hypothetical protein | - |
| CDIF29688_RS05825 () | 1170345..1170518 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| CDIF29688_RS05830 () | 1170518..1171129 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| CDIF29688_RS05835 () | 1171206..1171394 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| CDIF29688_RS05840 () | 1171374..1171691 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| CDIF29688_RS05845 () | 1171815..1172042 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| CDIF29688_RS05850 () | 1172112..1172804 | + | 693 | WP_009894745.1 | helix-turn-helix domain-containing protein | - |
| CDIF29688_RS05855 () | 1172782..1174035 | + | 1254 | WP_015984838.1 | PBSX family phage terminase large subunit | - |
| CDIF29688_RS05860 () | 1174041..1175480 | + | 1440 | WP_015984839.1 | phage portal protein | - |
| CDIF29688_RS05865 () | 1175470..1176867 | + | 1398 | WP_015984840.1 | minor capsid protein | - |
| CDIF29688_RS05870 () | 1176882..1177082 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF29688_RS05875 () | 1177148..1177711 | + | 564 | WP_015984841.1 | phage scaffolding protein | - |
| CDIF29688_RS05880 () | 1177723..1178622 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDIF29688_RS05885 () | 1178622..1178855 | + | 234 | WP_003429842.1 | hypothetical protein | - |
| CDIF29688_RS05890 () | 1178865..1179266 | + | 402 | WP_015984842.1 | hypothetical protein | - |
| CDIF29688_RS05895 () | 1179260..1179607 | + | 348 | WP_015984843.1 | hypothetical protein | - |
| CDIF29688_RS05900 () | 1179607..1180032 | + | 426 | WP_009896626.1 | HK97 gp10 family phage protein | - |
| CDIF29688_RS05905 () | 1180025..1180462 | + | 438 | WP_009901457.1 | hypothetical protein | - |
| CDIF29688_RS05910 () | 1180455..1180631 | + | 177 | WP_021368348.1 | hypothetical protein | - |
| CDIF29688_RS05915 () | 1180632..1181942 | + | 1311 | WP_015984844.1 | phage tail sheath family protein | - |
| CDIF29688_RS05920 () | 1181964..1182434 | + | 471 | WP_015984845.1 | phage tail tube protein | - |
| CDIF29688_RS05925 () | 1182487..1182744 | + | 258 | WP_015984846.1 | hypothetical protein | - |
| CDIF29688_RS05930 () | 1182749..1183189 | + | 441 | WP_015984847.1 | hypothetical protein | - |
| CDIF29688_RS20305 () | 1183510..1183671 | + | 162 | WP_009901465.1 | hypothetical protein | Toxin Detail |
| - () | 1183591..1183730 | - | 140 | NuclAT_3 | - | Antitoxin Detail |
| - () | 1183591..1183730 | - | 140 | NuclAT_5 | - | Antitoxin Detail |
| CDIF29688_RS05940 () | 1183820..1184053 | + | 234 | WP_015984848.1 | hypothetical protein | - |
| CDIF29688_RS05945 () | 1184113..1184640 | + | 528 | WP_015984849.1 | DUF4352 domain-containing protein | - |
| CDIF29688_RS05950 () | 1184782..1185342 | + | 561 | WP_015984850.1 | hypothetical protein | - |
| CDIF29688_RS05955 () | 1185420..1187708 | + | 2289 | WP_015984851.1 | tape measure protein | - |
| CDIF29688_RS05960 () | 1187725..1188426 | + | 702 | WP_015984852.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29688_RS05965 () | 1188419..1190389 | + | 1971 | WP_021368250.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF29688_RS05970 () | 1190403..1190663 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF29688_RS05975 () | 1190668..1191087 | + | 420 | WP_009896659.1 | DUF2634 domain-containing protein | - |
| CDIF29688_RS05980 () | 1191088..1192137 | + | 1050 | WP_009896661.1 | baseplate J/gp47 family protein | - |
| CDIF29688_RS05985 () | 1192130..1192747 | + | 618 | WP_009896663.1 | YmfQ family protein | - |
| CDIF29688_RS05990 () | 1192759..1193781 | + | 1023 | WP_022582609.1 | phage tail protein | - |
| CDIF29688_RS05995 () | 1193795..1195477 | + | 1683 | WP_021366409.1 | glycine rich family protein | - |
| CDIF29688_RS06000 () | 1195491..1195784 | + | 294 | WP_021435055.1 | hypothetical protein | - |
| CDIF29688_RS06005 () | 1195784..1195966 | + | 183 | WP_016056339.1 | hypothetical protein | - |
| CDIF29688_RS06010 () | 1195999..1197234 | + | 1236 | WP_021427043.1 | hypothetical protein | - |
| CDIF29688_RS06015 () | 1197231..1197530 | + | 300 | WP_021381672.1 | hypothetical protein | - |
| CDIF29688_RS06020 () | 1197532..1197669 | + | 138 | WP_021372184.1 | XkdX family protein | - |
| CDIF29688_RS06025 () | 1197731..1198162 | + | 432 | WP_021372187.1 | phage holin family protein | - |
| CDIF29688_RS06030 () | 1198162..1198974 | + | 813 | WP_015984863.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29688_RS06035 () | 1199055..1199417 | + | 363 | WP_015984864.1 | hypothetical protein | - |
| CDIF29688_RS06040 () | 1199583..1200101 | + | 519 | WP_009898407.1 | hypothetical protein | - |
| CDIF29688_RS06045 () | 1200165..1201751 | - | 1587 | WP_015984865.1 | hypothetical protein | - |
| CDIF29688_RS06050 () | 1201727..1202248 | - | 522 | WP_009898403.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29688_RS06055 () | 1202950..1203138 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF29688_RS06060 () | 1203398..1203541 | + | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| - () | 1203463..1203613 | - | 151 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1203467..1203613 | - | 147 | NuclAT_0 | - | - |
| CDIF29688_RS06065 () | 1204048..1204425 | + | 378 | WP_021391346.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29688_RS06070 () | 1204535..1204918 | + | 384 | WP_015984867.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29688_RS06075 () | 1205103..1205687 | + | 585 | Protein_1074 | GntR family transcriptional regulator | - |
| CDIF29688_RS06080 () | 1205713..1206126 | + | 414 | WP_009896035.1 | PTS sugar transporter subunit IIA | - |
| CDIF29688_RS06085 () | 1206130..1206873 | + | 744 | WP_003437997.1 | membrane complex biogenesis protein, BtpA family | - |
| CDIF29688_RS06090 () | 1206873..1207343 | + | 471 | WP_003428544.1 | PTS sugar transporter subunit IIB | - |
| CDIF29688_RS06095 () | 1207360..1208118 | + | 759 | WP_009888882.1 | PTS sugar transporter subunit IIC | - |
| CDIF29688_RS06100 () | 1208102..1208944 | + | 843 | WP_003418955.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| CDIF29688_RS06105 () | 1209104..1210009 | - | 906 | WP_021366520.1 | LysR family transcriptional regulator | - |
| CDIF29688_RS06110 () | 1210371..1211105 | + | 735 | WP_003438006.1 | hypothetical protein | - |
| CDIF29688_RS06115 () | 1211316..1212497 | + | 1182 | WP_021366441.1 | molybdopterin molybdotransferase MoeA | - |
| CDIF29688_RS06120 () | 1212481..1213053 | + | 573 | WP_003438013.1 | molybdopterin-guanine dinucleotide biosynthesis protein B | - |
| CDIF29688_RS06125 () | 1213172..1213447 | + | 276 | WP_003428537.1 | PTS sugar transporter subunit IIB | - |
| CDIF29688_RS06130 () | 1213690..1215390 | + | 1701 | WP_003438014.1 | Putative multidrug export ATP-binding/permease protein | VF |
| CDIF29688_RS06135 () | 1215753..1216940 | + | 1188 | WP_003438015.1 | membrane protein | - |
| CDIF29688_RS06140 () | 1217000..1218163 | + | 1164 | WP_011861090.1 | amidohydrolase | - |
| CDIF29688_RS06145 () | 1218314..1219117 | + | 804 | WP_009892895.1 | zinc transporter ZupT | - |
| CDIF29688_RS06150 () | 1219213..1219773 | + | 561 | WP_012816089.1 | DUF2812 domain-containing protein | - |
| CDIF29688_RS06155 () | 1220024..1220737 | + | 714 | WP_003438019.1 | Transcriptional regulatory protein YpdB | VF |
| CDIF29688_RS06160 () | 1220731..1222110 | + | 1380 | WP_021390122.1 | ATP-binding protein | - |
| CDIF29688_RS06165 () | 1222351..1223040 | + | 690 | WP_021390123.1 | lipoprotein | - |
| CDIF29688_RS06170 () | 1223261..1225633 | + | 2373 | WP_003438022.1 | formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme | - |
| CDIF29688_RS06175 () | 1225648..1226550 | + | 903 | WP_009896060.1 | glycyl-radical enzyme activating protein | - |
| CDIF29688_RS06180 () | 1226570..1227121 | + | 552 | WP_003438024.1 | helix-turn-helix domain-containing protein | - |
| CDIF29688_RS06185 () | 1227285..1228157 | + | 873 | WP_009888897.1 | metallophosphoesterase | - |
| CDIF29688_RS06190 () | 1228321..1229301 | + | 981 | WP_003428523.1 | hypothetical protein | - |
| CDIF29688_RS06195 () | 1229802..1230023 | + | 222 | WP_003428522.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|