MGE detailed information
MGE type: Prophage MGE length: 72056 bp
Accession: NZ_LN614756 Location: 1076912..1148967 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Accession: NZ_LN614756 Location: 1076912..1148967 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630DERM_RS05110 () | 1071949..1073814 | + | 1866 | WP_003437164.1 | glycoside hydrolase family 13 protein | - |
| CD630DERM_RS05115 () | 1074059..1074712 | + | 654 | WP_011860978.1 | GntR family transcriptional regulator | - |
| CD630DERM_RS05120 () | 1075350..1076825 | + | 1476 | WP_011860979.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| CD630DERM_RS05125 () | 1076912..1077325 | + | 414 | WP_003418655.1 | adenosylmethionine decarboxylase | - |
| CD630DERM_RS05130 () | 1077355..1078206 | + | 852 | WP_009888722.1 | polyamine aminopropyltransferase | - |
| CD630DERM_RS05135 () | 1078196..1079074 | + | 879 | WP_009888724.1 | agmatinase | - |
| CD630DERM_RS05140 () | 1079254..1079454 | - | 201 | WP_003418660.1 | cold-shock protein | - |
| CD630DERM_RS05145 () | 1079921..1081411 | + | 1491 | WP_009888725.1 | 4Fe-4S dicluster domain-containing protein | - |
| CD630DERM_RS05150 () | 1081691..1083187 | + | 1497 | WP_009895925.1 | 4Fe-4S dicluster domain-containing protein | - |
| CD630DERM_RS05155 () | 1083332..1084246 | + | 915 | WP_011860980.1 | ComE operon protein 3 | VF |
| CD630DERM_RS05160 () | 1084364..1084555 | + | 192 | WP_003418667.1 | hypothetical protein | - |
| CD630DERM_RS05165 () | 1084778..1085128 | + | 351 | WP_003437137.1 | hypothetical protein | - |
| CD630DERM_RS05170 () | 1085390..1086895 | + | 1506 | WP_003437136.1 | DUF1846 domain-containing protein | - |
| CD630DERM_RS05175 () | 1087285..1088382 | + | 1098 | WP_011860981.1 | DNA polymerase IV | - |
| CD630DERM_RS05180 () | 1088645..1089781 | + | 1137 | WP_003437132.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| CD630DERM_RS05185 () | 1089774..1091321 | + | 1548 | WP_021361803.1 | ABC transporter permease subunit | - |
| CD630DERM_RS05190 () | 1091655..1092521 | + | 867 | WP_003437125.1 | cation diffusion facilitator family transporter | - |
| CD630DERM_RS05195 () | 1092662..1093300 | + | 639 | Protein_924 | aldo/keto reductase | - |
| CD630DERM_RS05200 () | 1093454..1094572 | - | 1119 | WP_011860983.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| - () | 1094899..1095005 | - | 107 | NuclAT_10 | - | - |
| CD630DERM_RS05205 () | 1095080..1096744 | - | 1665 | WP_011860984.1 | DUF4041 domain-containing protein | - |
| CD630DERM_RS05210 () | 1097015..1098463 | - | 1449 | WP_011860985.1 | SAP domain-containing protein | - |
| CD630DERM_RS05215 () | 1099111..1099443 | - | 333 | WP_011860986.1 | helix-turn-helix transcriptional regulator | - |
| CD630DERM_RS19965 () | 1099605..1099793 | + | 189 | WP_011860987.1 | helix-turn-helix transcriptional regulator | - |
| CD630DERM_RS05225 () | 1099827..1100621 | + | 795 | WP_011860988.1 | ORF6N domain-containing protein | - |
| CD630DERM_RS05230 () | 1100683..1100883 | + | 201 | WP_011860989.1 | hypothetical protein | - |
| CD630DERM_RS05235 () | 1100922..1101491 | - | 570 | WP_022583275.1 | hypothetical protein | - |
| CD630DERM_RS05240 () | 1101561..1101758 | + | 198 | WP_011860991.1 | helix-turn-helix transcriptional regulator | - |
| CD630DERM_RS05245 () | 1101775..1102104 | + | 330 | WP_011860992.1 | helix-turn-helix domain-containing protein | - |
| CD630DERM_RS05250 () | 1102206..1102394 | + | 189 | WP_011860993.1 | hypothetical protein | - |
| CD630DERM_RS05255 () | 1102410..1102622 | + | 213 | WP_022583264.1 | hypothetical protein | - |
| CD630DERM_RS05260 () | 1102721..1102963 | + | 243 | WP_011860995.1 | hypothetical protein | - |
| CD630DERM_RS05265 () | 1103047..1103562 | + | 516 | WP_011860996.1 | siphovirus Gp157 family protein | - |
| CD630DERM_RS19970 () | 1103564..1104466 | + | 903 | WP_011860997.1 | phage recombination protein Bet | - |
| CD630DERM_RS19975 () | 1104479..1105318 | + | 840 | WP_011860998.1 | hypothetical protein | - |
| CD630DERM_RS05280 () | 1105389..1105643 | + | 255 | WP_011860999.1 | hypothetical protein | - |
| CD630DERM_RS05285 () | 1105717..1105980 | + | 264 | WP_011861000.1 | hypothetical protein | - |
| CD630DERM_RS05290 () | 1105992..1106342 | + | 351 | WP_011861001.1 | hypothetical protein | - |
| CD630DERM_RS05295 () | 1106346..1106726 | + | 381 | WP_011861002.1 | hypothetical protein | - |
| CD630DERM_RS20870 () | 1106695..1106856 | + | 162 | WP_021362052.1 | hypothetical protein | - |
| CD630DERM_RS20595 () | 1106831..1106989 | + | 159 | WP_011861004.1 | hypothetical protein | - |
| CD630DERM_RS05305 () | 1106986..1107159 | + | 174 | WP_011861005.1 | DUF3797 domain-containing protein | - |
| CD630DERM_RS05315 () | 1107277..1107612 | + | 336 | WP_011861007.1 | hypothetical protein | - |
| CD630DERM_RS05320 () | 1107712..1107987 | + | 276 | WP_011861008.1 | hypothetical protein | - |
| CD630DERM_RS05325 () | 1108083..1109156 | + | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CD630DERM_RS05330 () | 1109236..1109445 | + | 210 | WP_011861010.1 | hypothetical protein | - |
| CD630DERM_RS05335 () | 1109457..1110452 | + | 996 | WP_011861011.1 | nucleoid-associated protein | - |
| CD630DERM_RS19980 () | 1110461..1111186 | + | 726 | WP_011861012.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CD630DERM_RS20875 () | 1111183..1111356 | + | 174 | WP_011861013.1 | hypothetical protein | - |
| CD630DERM_RS05350 () | 1111349..1111720 | + | 372 | WP_011861014.1 | hypothetical protein | - |
| CD630DERM_RS05355 () | 1111723..1112190 | + | 468 | WP_011861015.1 | hypothetical protein | - |
| CD630DERM_RS05360 () | 1112269..1112454 | + | 186 | WP_011861016.1 | hypothetical protein | - |
| CD630DERM_RS05365 () | 1112468..1112707 | + | 240 | WP_015981545.1 | hypothetical protein | - |
| CD630DERM_RS05370 () | 1112836..1113642 | + | 807 | WP_011861019.1 | DNA adenine methylase | - |
| CD630DERM_RS05375 () | 1113656..1114063 | + | 408 | WP_011861020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CD630DERM_RS05380 () | 1114078..1114803 | + | 726 | WP_011861021.1 | phage antirepressor Ant | - |
| CD630DERM_RS05385 () | 1114897..1115385 | + | 489 | WP_011861022.1 | hypothetical protein | - |
| CD630DERM_RS20880 () | 1116133..1116306 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| CD630DERM_RS05395 () | 1116306..1116917 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| CD630DERM_RS05400 () | 1116994..1117182 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| CD630DERM_RS05405 () | 1117162..1117479 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| CD630DERM_RS05410 () | 1117603..1117830 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| CD630DERM_RS05415 () | 1117900..1118592 | + | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CD630DERM_RS05420 () | 1118570..1119823 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CD630DERM_RS05425 () | 1119829..1121268 | + | 1440 | WP_011861027.1 | phage portal protein | - |
| CD630DERM_RS05430 () | 1121258..1122751 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CD630DERM_RS05435 () | 1122717..1122959 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CD630DERM_RS05440 () | 1123269..1123832 | + | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CD630DERM_RS05445 () | 1123844..1124743 | + | 900 | WP_011861029.1 | phage capsid protein | - |
| CD630DERM_RS05450 () | 1124743..1124976 | + | 234 | WP_009896624.1 | hypothetical protein | - |
| CD630DERM_RS05455 () | 1124986..1125387 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CD630DERM_RS05460 () | 1125381..1125728 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| CD630DERM_RS05465 () | 1125728..1126153 | + | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CD630DERM_RS05470 () | 1126146..1126583 | + | 438 | WP_009901504.1 | hypothetical protein | - |
| CD630DERM_RS20885 () | 1126576..1126752 | + | 177 | WP_011861031.1 | hypothetical protein | - |
| CD630DERM_RS05480 () | 1126754..1128064 | + | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CD630DERM_RS05485 () | 1128081..1128551 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CD630DERM_RS05490 () | 1128623..1129063 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CD630DERM_RS20890 () | 1129404..1129565 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1129485..1129618 | - | 134 | NuclAT_5 | - | Antitoxin Detail |
| - () | 1129485..1129618 | - | 134 | NuclAT_7 | - | Antitoxin Detail |
| - () | 1129963..1130068 | - | 106 | NuclAT_11 | - | - |
| - () | 1129963..1130068 | - | 106 | NuclAT_13 | - | - |
| CD630DERM_RS05500 () | 1131229..1131789 | + | 561 | WP_011861034.1 | lipoprotein | - |
| CD630DERM_RS05505 () | 1131833..1132402 | + | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CD630DERM_RS05510 () | 1132473..1134824 | + | 2352 | WP_011861036.1 | tape measure protein | - |
| CD630DERM_RS05515 () | 1134840..1135529 | + | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD630DERM_RS05520 () | 1135522..1137492 | + | 1971 | WP_011861038.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CD630DERM_RS05525 () | 1137506..1137766 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CD630DERM_RS05530 () | 1137771..1138190 | + | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CD630DERM_RS05535 () | 1138191..1139240 | + | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CD630DERM_RS05540 () | 1139233..1139850 | + | 618 | WP_011861041.1 | YmfQ family protein | - |
| CD630DERM_RS05545 () | 1139862..1140665 | + | 804 | WP_011861042.1 | phage tail protein | - |
| CD630DERM_RS05550 () | 1140683..1142380 | + | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CD630DERM_RS05555 () | 1142397..1142690 | + | 294 | WP_011861044.1 | hypothetical protein | - |
| CD630DERM_RS05560 () | 1142690..1142872 | + | 183 | WP_011861045.1 | hypothetical protein | - |
| CD630DERM_RS05565 () | 1142907..1143137 | + | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CD630DERM_RS05570 () | 1143157..1143417 | + | 261 | WP_011861047.1 | phage holin family protein | - |
| CD630DERM_RS05575 () | 1143414..1144229 | + | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD630DERM_RS05580 () | 1144246..1144542 | + | 297 | WP_011861049.1 | hypothetical protein | - |
| CD630DERM_RS05585 () | 1145088..1145651 | + | 564 | WP_021371073.1 | hypothetical protein | - |
| CD630DERM_RS05590 () | 1145669..1146100 | + | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CD630DERM_RS05595 () | 1146102..1146806 | + | 705 | WP_011861053.1 | hypothetical protein | - |
| CD630DERM_RS05600 () | 1147054..1147242 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CD630DERM_RS20895 () | 1147503..1147646 | + | 144 | WP_011861054.1 | hypothetical protein | Toxin Detail |
| - () | 1147568..1147718 | - | 151 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1147572..1147718 | - | 147 | NuclAT_3 | - | - |
| CD630DERM_RS05610 () | 1148260..1148541 | + | 282 | WP_009898394.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630DERM_RS05615 () | 1148581..1148967 | + | 387 | WP_011861055.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630DERM_RS05620 () | 1149153..1149677 | + | 525 | Protein_1009 | 4Fe-4S dicluster domain-containing protein | - |
| CD630DERM_RS05625 () | 1150061..1151299 | + | 1239 | WP_011861056.1 | hypothetical protein | - |
| CD630DERM_RS05630 () | 1151328..1152215 | + | 888 | WP_011861057.1 | decaprenyl-phosphate phosphoribosyltransferase | - |
| CD630DERM_RS05635 () | 1152249..1152878 | + | 630 | WP_011861058.1 | HAD-IB family hydrolase | - |
| CD630DERM_RS05640 () | 1152883..1153347 | + | 465 | WP_003437111.1 | small multi-drug export protein | - |