MGE detailed information
MGE type: Prophage MGE length: 60768 bp
Accession: NZ_CP029154 Location: 3014855..3075622 Organism: Clostridioides difficile strain CD161 Replicon: chromosome
Accession: NZ_CP029154 Location: 3014855..3075622 Organism: Clostridioides difficile strain CD161 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDG63_RS14255 () | 3010229..3010798 | - | 570 | WP_003416023.1 | phosphate propanoyltransferase | - |
| DDG63_RS14260 () | 3010870..3011478 | - | 609 | WP_003427077.1 | flavodoxin family protein | - |
| DDG63_RS14265 () | 3011486..3013249 | - | 1764 | WP_003427079.1 | SpoIIE family protein phosphatase | - |
| DDG63_RS14270 () | 3013292..3013759 | - | 468 | WP_003427083.1 | hypothetical protein | - |
| DDG63_RS14275 () | 3013942..3014403 | + | 462 | WP_003427085.1 | hypothetical protein | - |
| DDG63_RS21670 () | 3014496..3014666 | - | 171 | WP_003416012.1 | hypothetical protein | - |
| DDG63_RS14285 () | 3014855..3015076 | - | 222 | WP_003416009.1 | alpha/beta-type small acid-soluble spore protein | - |
| DDG63_RS14290 () | 3015160..3016386 | - | 1227 | WP_003427089.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| DDG63_RS14295 () | 3016448..3017380 | - | 933 | WP_003427092.1 | phosphatase PAP2 family protein | - |
| DDG63_RS14300 () | 3017469..3017996 | - | 528 | WP_003416006.1 | hypoxanthine phosphoribosyltransferase | - |
| DDG63_RS14305 () | 3018225..3019301 | + | 1077 | WP_003427095.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| DDG63_RS14310 () | 3019388..3020596 | - | 1209 | WP_009893711.1 | dicarboxylate/amino acid:cation symporter | - |
| DDG63_RS14315 () | 3020947..3021330 | - | 384 | WP_042741769.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| - () | 3021785..3021931 | + | 147 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3021785..3021935 | + | 151 | NuclAT_1 | - | - |
| DDG63_RS21675 () | 3021857..3022000 | - | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| DDG63_RS14325 () | 3022262..3022450 | + | 189 | WP_021360368.1 | hypothetical protein | - |
| DDG63_RS14330 () | 3022699..3023403 | - | 705 | WP_021371074.1 | hypothetical protein | - |
| DDG63_RS14335 () | 3023405..3023836 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| DDG63_RS14340 () | 3023854..3024417 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| DDG63_RS14345 () | 3024963..3025259 | - | 297 | WP_042741683.1 | hypothetical protein | - |
| DDG63_RS14350 () | 3025276..3026091 | - | 816 | WP_032509862.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DDG63_RS14355 () | 3026091..3026348 | - | 258 | WP_015981519.1 | phage holin family protein | - |
| DDG63_RS14360 () | 3026368..3026598 | - | 231 | WP_015981518.1 | hemolysin XhlA family protein | - |
| DDG63_RS14365 () | 3026634..3026816 | - | 183 | WP_015981517.1 | hypothetical protein | - |
| DDG63_RS14370 () | 3026855..3028087 | - | 1233 | Protein_2698 | hypothetical protein | - |
| DDG63_RS14375 () | 3028105..3028884 | - | 780 | WP_021414795.1 | phage tail protein | - |
| DDG63_RS14380 () | 3028901..3029509 | - | 609 | WP_015981513.1 | DUF2313 domain-containing protein | - |
| DDG63_RS14385 () | 3029509..3030561 | - | 1053 | WP_021414796.1 | baseplate J/gp47 family protein | - |
| DDG63_RS14390 () | 3030554..3030982 | - | 429 | WP_021435020.1 | DUF2634 domain-containing protein | - |
| DDG63_RS14395 () | 3030982..3031308 | - | 327 | WP_015981510.1 | DUF2577 family protein | - |
| DDG63_RS14400 () | 3031324..3032844 | - | 1521 | WP_074074700.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| DDG63_RS14405 () | 3033103..3033345 | - | 243 | WP_015981507.1 | hypothetical protein | - |
| DDG63_RS14410 () | 3033366..3033563 | - | 198 | WP_041968928.1 | hypothetical protein | - |
| DDG63_RS14415 () | 3033653..3034288 | - | 636 | WP_032509647.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DDG63_RS14420 () | 3034306..3034497 | - | 192 | WP_021391016.1 | hypothetical protein | - |
| DDG63_RS21680 () | 3034631..3034780 | - | 150 | WP_108840848.1 | hypothetical protein | - |
| DDG63_RS14430 () | 3035242..3035808 | - | 567 | WP_041968926.1 | SHOCT domain-containing protein | - |
| DDG63_RS14435 () | 3036065..3038899 | - | 2835 | WP_042741633.1 | phage tail tape measure protein | - |
| DDG63_RS21685 () | 3038903..3039049 | - | 147 | WP_021391025.1 | hypothetical protein | - |
| DDG63_RS14440 () | 3039076..3039546 | - | 471 | WP_015981501.1 | XkdN protein | - |
| DDG63_RS14445 () | 3039578..3040009 | - | 432 | WP_108840849.1 | phage tail tube protein | - |
| DDG63_RS14450 () | 3040024..3041094 | - | 1071 | WP_042741634.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| DDG63_RS14455 () | 3041095..3041547 | - | 453 | WP_015981498.1 | hypothetical protein | - |
| DDG63_RS14460 () | 3041558..3041968 | - | 411 | WP_074074702.1 | HK97 gp10 family phage protein | - |
| DDG63_RS14465 () | 3041969..3042319 | - | 351 | WP_015981496.1 | hypothetical protein | - |
| DDG63_RS14470 () | 3042321..3042671 | - | 351 | WP_077708705.1 | phage head-tail connector protein | - |
| DDG63_RS14475 () | 3042700..3042921 | - | 222 | WP_042741635.1 | Rho termination factor N-terminal domain-containing protein | - |
| DDG63_RS14480 () | 3042934..3043872 | - | 939 | WP_015981494.1 | hypothetical protein | - |
| DDG63_RS14485 () | 3043896..3044492 | - | 597 | WP_052465178.1 | phage scaffolding protein | - |
| DDG63_RS14490 () | 3044613..3044843 | - | 231 | WP_042741636.1 | hypothetical protein | - |
| DDG63_RS14495 () | 3044885..3045079 | - | 195 | WP_015981492.1 | hypothetical protein | - |
| DDG63_RS14500 () | 3045470..3045730 | - | 261 | Protein_2725 | hypothetical protein | - |
| DDG63_RS14505 () | 3045798..3046838 | - | 1041 | WP_015981490.1 | minor capsid protein | - |
| DDG63_RS14510 () | 3046851..3048206 | - | 1356 | WP_042741637.1 | phage portal protein | - |
| DDG63_RS14515 () | 3048221..3050617 | - | 2397 | WP_077715713.1 | phage terminase large subunit | - |
| DDG63_RS14520 () | 3050607..3051059 | - | 453 | WP_042741638.1 | hypothetical protein | - |
| DDG63_RS21690 () | 3051125..3051709 | - | 585 | WP_198661899.1 | hypothetical protein | - |
| DDG63_RS14530 () | 3051732..3052655 | - | 924 | WP_124959457.1 | DUF4868 domain-containing protein | - |
| DDG63_RS14535 () | 3052782..3053099 | + | 318 | WP_042741639.1 | hypothetical protein | - |
| DDG63_RS14540 () | 3053079..3053267 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| DDG63_RS14545 () | 3053344..3053955 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| DDG63_RS21695 () | 3053955..3054128 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| DDG63_RS14555 () | 3054876..3055364 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| DDG63_RS14560 () | 3055458..3056183 | - | 726 | WP_011861021.1 | phage antirepressor Ant | - |
| DDG63_RS14565 () | 3056198..3056605 | - | 408 | WP_011861020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DDG63_RS14570 () | 3056619..3057425 | - | 807 | WP_108840850.1 | DNA adenine methylase | - |
| DDG63_RS14580 () | 3057554..3057793 | - | 240 | WP_015981545.1 | hypothetical protein | - |
| DDG63_RS14585 () | 3057807..3057992 | - | 186 | WP_011861016.1 | hypothetical protein | - |
| DDG63_RS14590 () | 3058071..3058538 | - | 468 | WP_011861015.1 | hypothetical protein | - |
| DDG63_RS14595 () | 3058541..3058912 | - | 372 | WP_011861014.1 | hypothetical protein | - |
| DDG63_RS21700 () | 3058905..3059078 | - | 174 | WP_011861013.1 | hypothetical protein | - |
| DDG63_RS14605 () | 3059075..3059800 | - | 726 | WP_011861012.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| DDG63_RS14610 () | 3059809..3060804 | - | 996 | WP_108840851.1 | nucleoid-associated protein | - |
| DDG63_RS14615 () | 3060801..3061022 | - | 222 | WP_021360310.1 | hypothetical protein | - |
| DDG63_RS14620 () | 3061040..3061735 | - | 696 | WP_021394969.1 | hypothetical protein | - |
| DDG63_RS14625 () | 3061876..3062892 | - | 1017 | WP_108840852.1 | DNA (cytosine-5-)-methyltransferase | - |
| DDG63_RS14630 () | 3063000..3063335 | - | 336 | WP_015981539.1 | hypothetical protein | - |
| DDG63_RS14635 () | 3063335..3063508 | - | 174 | WP_011861005.1 | DUF3797 domain-containing protein | - |
| DDG63_RS14640 () | 3063505..3063663 | - | 159 | WP_011861004.1 | hypothetical protein | - |
| DDG63_RS21705 () | 3063638..3063799 | - | 162 | WP_021362052.1 | hypothetical protein | - |
| DDG63_RS14650 () | 3063768..3064148 | - | 381 | WP_021425232.1 | NUMOD1 domain protein | - |
| DDG63_RS14655 () | 3064152..3064502 | - | 351 | WP_032520969.1 | hypothetical protein | - |
| DDG63_RS14660 () | 3064514..3064777 | - | 264 | WP_011861000.1 | hypothetical protein | - |
| DDG63_RS14665 () | 3064851..3065105 | - | 255 | WP_011860999.1 | hypothetical protein | - |
| DDG63_RS14670 () | 3065180..3065587 | - | 408 | WP_015981535.1 | single-stranded DNA-binding protein | - |
| DDG63_RS14675 () | 3065604..3065777 | - | 174 | WP_011861749.1 | resolvase | - |
| DDG63_RS14680 () | 3065837..3066718 | - | 882 | WP_021371032.1 | DnaD domain protein | - |
| DDG63_RS14685 () | 3066728..3067336 | - | 609 | WP_015981533.1 | ERF family protein | - |
| DDG63_RS14690 () | 3067346..3067855 | - | 510 | WP_021364144.1 | siphovirus Gp157 family protein | - |
| DDG63_RS14695 () | 3067938..3068183 | - | 246 | WP_021371031.1 | hypothetical protein | - |
| DDG63_RS14700 () | 3068173..3068355 | - | 183 | WP_021390972.1 | hypothetical protein | - |
| DDG63_RS14705 () | 3068488..3068817 | - | 330 | WP_021390970.1 | helix-turn-helix domain-containing protein | - |
| DDG63_RS14710 () | 3068834..3069031 | - | 198 | WP_021390971.1 | helix-turn-helix transcriptional regulator | - |
| DDG63_RS14715 () | 3069102..3069284 | + | 183 | WP_021371964.1 | hypothetical protein | - |
| DDG63_RS21710 () | 3069271..3069468 | - | 198 | WP_021361265.1 | hypothetical protein | - |
| DDG63_RS14720 () | 3069469..3069663 | - | 195 | WP_021390965.1 | hypothetical protein | - |
| DDG63_RS14725 () | 3069747..3070499 | - | 753 | WP_108840853.1 | phage antirepressor KilAC domain-containing protein | - |
| DDG63_RS14730 () | 3070492..3070671 | - | 180 | WP_009901706.1 | hypothetical protein | - |
| DDG63_RS14735 () | 3070807..3070986 | + | 180 | WP_009901705.1 | Arc family DNA-binding protein | - |
| DDG63_RS14740 () | 3071173..3071961 | - | 789 | WP_108840854.1 | phage antirepressor KilAC domain-containing protein | - |
| DDG63_RS21715 () | 3071978..3072148 | - | 171 | WP_015994368.1 | hypothetical protein | - |
| DDG63_RS21720 () | 3072304..3072477 | + | 174 | WP_015994367.1 | hypothetical protein | - |
| DDG63_RS14745 () | 3072615..3072824 | - | 210 | WP_021370739.1 | hypothetical protein | - |
| DDG63_RS14750 () | 3073001..3073396 | + | 396 | WP_015981527.1 | helix-turn-helix domain-containing protein | - |
| DDG63_RS21440 () | 3073393..3073530 | - | 138 | WP_021390967.1 | hypothetical protein | - |
| DDG63_RS14755 () | 3074044..3074445 | + | 402 | WP_015981526.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| DDG63_RS14760 () | 3074504..3075622 | + | 1119 | WP_042741613.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| DDG63_RS14765 () | 3075789..3076178 | - | 390 | WP_003427102.1 | DUF1232 domain-containing protein | - |
| DDG63_RS14770 () | 3076282..3077283 | - | 1002 | WP_003427105.1 | aspartate--ammonia ligase | - |
| DDG63_RS14775 () | 3077731..3078921 | - | 1191 | WP_003427108.1 | pyridoxal phosphate-dependent aminotransferase | - |
| DDG63_RS14780 () | 3079203..3080324 | - | 1122 | WP_003427111.1 | M20 peptidase aminoacylase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|