MGE detailed information
MGE type: Prophage MGE length: 18063 bp
Accession: NZ_CP012309 Location: 2593252..2611314 Organism: Clostridioides difficile strain DSM 28668 Replicon: chromosome
Accession: NZ_CP012309 Location: 2593252..2611314 Organism: Clostridioides difficile strain DSM 28668 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28668_RS12325 () | 2589773..2590474 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF28668_RS12330 () | 2590467..2590790 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF28668_RS12335 () | 2590996..2593056 | - | 2061 | WP_192879789.1 | sensor histidine kinase | - |
| CDIF28668_RS12345 () | 2593252..2593944 | - | 693 | WP_004454566.1 | Transcriptional regulatory protein WalR | VF |
| CDIF28668_RS12350 () | 2594556..2594930 | - | 375 | Protein_2293 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28668_RS12355 () | 2595149..2595382 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF28668_RS12360 () | 2595366..2595779 | + | 414 | WP_021401466.1 | hypothetical protein | - |
| CDIF28668_RS12365 () | 2595798..2595998 | + | 201 | WP_021362723.1 | hypothetical protein | - |
| CDIF28668_RS12370 () | 2596248..2597903 | - | 1656 | WP_021401477.1 | hypothetical protein | - |
| CDIF28668_RS12375 () | 2598369..2598833 | + | 465 | WP_118822375.1 | hypothetical protein | - |
| CDIF28668_RS12385 () | 2599162..2599323 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF28668_RS12390 () | 2599375..2599827 | - | 453 | WP_192879790.1 | hypothetical protein | - |
| CDIF28668_RS12395 () | 2599824..2600189 | - | 366 | WP_004454581.1 | Bro-N domain-containing protein | - |
| CDIF28668_RS19620 () | 2600310..2600462 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| CDIF28668_RS12400 () | 2601606..2602520 | - | 915 | WP_118822376.1 | SHOCT domain-containing protein | - |
| - () | 2602664..2602793 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| CDIF28668_RS12405 () | 2602714..2602866 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF28668_RS12410 () | 2603140..2603463 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF28668_RS12415 () | 2603499..2603753 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF28668_RS12420 () | 2604061..2604558 | - | 498 | Protein_2307 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF28668_RS12425 () | 2604848..2605223 | - | 376 | Protein_2308 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28668_RS12430 () | 2605328..2605705 | - | 378 | WP_095905896.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF28668_RS12435 () | 2606510..2607004 | + | 495 | WP_021422415.1 | Type II secretion system protein G | VF |
| CDIF28668_RS12440 () | 2607393..2607563 | + | 171 | WP_021394397.1 | hypothetical protein | - |
| CDIF28668_RS12445 () | 2608040..2608229 | - | 190 | Protein_2312 | IS3 family transposase ISEfa10 | Transposase |
| CDIF28668_RS12450 () | 2608391..2608741 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CDIF28668_RS12455 () | 2608743..2608943 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CDIF28668_RS12460 () | 2609266..2609442 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF28668_RS12465 () | 2609667..2609867 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF28668_RS12470 () | 2610502..2611314 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF28668_RS12475 () | 2611324..2612115 | + | 792 | WP_118822377.1 | ABC transporter permease | - |
| CDIF28668_RS12480 () | 2612117..2612812 | + | 696 | WP_009893573.1 | ATP-binding cassette domain-containing protein | - |
| CDIF28668_RS12485 () | 2612799..2613530 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF28668_RS12490 () | 2613844..2614644 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF28668_RS12495 () | 2615184..2615900 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|