MGE detailed information
MGE type: Prophage MGE length: 17137 bp
Accession: NC_009089 Location: 2658361..2675497 Organism: Clostridium difficile 630 Replicon: chromosome
Accession: NC_009089 Location: 2658361..2675497 Organism: Clostridium difficile 630 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630_RS12350 (CD630_22860) | 2653578..2654279 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CD630_RS12355 (CD630_22870) | 2654272..2654595 | + | 324 | WP_011861511.1 | AzlD domain-containing protein | - |
| CD630_RS12360 (CD630_22880) | 2654801..2656861 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CD630_RS12365 (CD630_22890) | 2657057..2657749 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CD630_RS12370 (CD630_22900) | 2658361..2658735 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630_RS12375 (CD630_22910) | 2658954..2659187 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CD630_RS12380 (CD630_22920) | 2659171..2659584 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CD630_RS12385 (CD630_22930) | 2659603..2659899 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CD630_RS12390 (CD630_22940) | 2660182..2660499 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CD630_RS12395 (CD630_22950) | 2660635..2661099 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CD630_RS19795 (CD630_22952) | 2661427..2661588 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CD630_RS12400 | 2661640..2662453 | - | 814 | Protein_2396 | toxin Bro | - |
| CD630_RS19800 | 2662573..2662725 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CD630_RS12405 (CD630_22990) | 2664134..2665057 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - | 2665201..2665330 | + | 130 | - | - | Antitoxin Detail |
| CD630_RS19805 (CD630_22991) | 2665251..2665403 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CD630_RS12410 (CD630_23000) | 2665677..2666000 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CD630_RS12415 (CD630_23010) | 2666036..2666290 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CD630_RS12420 (CD630_23020) | 2666726..2667244 | - | 519 | Protein_2402 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CD630_RS12425 | 2667534..2667909 | - | 376 | Protein_2403 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630_RS12430 (CD630_23040) | 2668014..2668391 | - | 378 | WP_011861518.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630_RS12435 (CD630_23050) | 2669195..2669689 | + | 495 | WP_011861519.1 | hypothetical protein | VF |
| CD630_RS12440 (CD630_23052) | 2670078..2670248 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CD630_RS12445 (CD630_23060) | 2670725..2670914 | - | 190 | Protein_2407 | IS3 family transposase ISEfa10 | Transposase |
| CD630_RS12450 (CD630_23070) | 2671076..2671426 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CD630_RS12455 (CD630_23080) | 2671428..2671628 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CD630_RS19810 (CD630_23090) | 2671951..2672127 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CD630_RS12460 (CD630_23100) | 2672352..2672552 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CD630_RS12465 (CD630_23110) | 2673187..2673999 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CD630_RS12470 (CD630_23120) | 2674009..2674800 | + | 792 | WP_011861521.1 | ABC transporter permease | - |
| CD630_RS12475 (CD630_23130) | 2674802..2675497 | + | 696 | WP_011861522.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| CD630_RS12480 (CD630_23140) | 2675484..2676215 | + | 732 | WP_009890514.1 | membrane protein | - |
| CD630_RS12485 (CD630_23150) | 2676529..2677329 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CD630_RS12490 (CD630_23160) | 2677869..2678585 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CD630_RS12495 (CD630_23170) | 2678554..2680143 | + | 1590 | WP_021361920.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridioides difficile strain 08ACD0030 | Prophage | TA53035 | NZ_CP010888 | 3069505..3086369 | 0.009 | |
| Clostridioides difficile 630 | Prophage | TA53087 | NZ_CP010905 | 2642986..2663210 | 0.004 | |
| Clostridioides difficile strain DSM 27639 | Prophage | TA55097 | NZ_CP011847 | 2536302..2553438 | 0 | |
| Clostridioides difficile strain DSM 28196 | Prophage | TA56274 | NZ_CP012320 | 2502581..2524109 | 0.006 | |
| Clostridioides difficile strain 630 delta erm | Prophage | TA64409 | NZ_CP016318 | 2615678..2631316 | 0.002 | |
| Clostridioides difficile strain DSM 29745 | Prophage | TA73338 | NZ_CP019857 | 2565295..2581952 | 0.01 | |
| Clostridioides difficile strain FDAARGOS_267 | Prophage | TA74675 | NZ_CP020424 | 3774825..3791482 | 0.01 | |
| Clostridioides difficile strain W0022a | Prophage | TA89606 | NZ_CP025046 | 2411493..2428357 | 0.009 | |
| Clostridioides difficile strain W0003a | Prophage | TA89618 | NZ_CP025047 | 2411049..2429337 | 0.01 | |
| Clostridioides difficile strain DSM 105001 | Prophage | TA101036 | NZ_CP028361 | 2621312..2638176 | 0.009 | |
| Clostridioides difficile strain CBA7204 | Prophage | TA105787 | NZ_CP029566 | 1684921..1700686 | 0.009 | |
| Clostridioides difficile strain Mta-79 | Prophage | TA135127 | NZ_CP042267 | 2551603..2568597 | 0.008 | |
| Clostridioides difficile strain 630Derm | Prophage | TA285471 | NZ_LN614756 | 2615679..2631317 | 0.002 |