MGE detailed information
MGE type: Prophage MGE length: 71314 bp
Accession: NC_017173 Location: 1707845..1779158 Organism: Clostridium difficile CF5 Replicon: chromosome
Accession: NC_017173 Location: 1707845..1779158 Organism: Clostridium difficile CF5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDCF5_RS07855 () | 1702917..1703678 | + | 762 | WP_003429799.1 | M48 family metallopeptidase | - |
| CDCF5_RS07860 () | 1704208..1704447 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDCF5_RS07865 () | 1704751..1705746 | + | 996 | WP_003429801.1 | ketol-acid reductoisomerase | - |
| CDCF5_RS07870 () | 1705799..1707487 | + | 1689 | WP_003429802.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDCF5_RS07875 () | 1707845..1708975 | - | 1131 | WP_003429803.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CDCF5_RS07880 () | 1709215..1709722 | - | 508 | Protein_1502 | ImmA/IrrE family metallo-endopeptidase | - |
| CDCF5_RS07885 () | 1709985..1711574 | - | 1590 | WP_003429805.1 | SIR2 family protein | - |
| CDCF5_RS07890 () | 1711598..1712161 | - | 564 | WP_003429806.1 | XRE family transcriptional regulator | - |
| CDCF5_RS07895 () | 1712314..1712535 | + | 222 | WP_003429807.1 | ISNCY family transposase ISH7A | Transposase |
| CDCF5_RS07900 () | 1712538..1713354 | + | 817 | Protein_1506 | phage regulatory protein/antirepressor Ant | - |
| CDCF5_RS07905 () | 1713533..1713712 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| CDCF5_RS07910 () | 1713848..1714027 | + | 180 | WP_003429812.1 | hypothetical protein | - |
| CDCF5_RS07915 () | 1714020..1714823 | + | 804 | WP_003429813.1 | ORF6N domain-containing protein | - |
| CDCF5_RS07920 () | 1714795..1715472 | + | 678 | WP_003429814.1 | hypothetical protein | - |
| CDCF5_RS07925 () | 1715547..1715789 | + | 243 | WP_003429815.1 | hypothetical protein | - |
| CDCF5_RS07930 () | 1715951..1716343 | + | 393 | WP_003429816.1 | helix-turn-helix domain-containing protein | - |
| CDCF5_RS07935 () | 1716324..1716467 | + | 144 | WP_186832583.1 | hypothetical protein | - |
| CDCF5_RS07940 () | 1716543..1716980 | + | 438 | WP_003429818.1 | hypothetical protein | - |
| CDCF5_RS07945 () | 1716992..1718158 | + | 1167 | WP_003429819.1 | DUF2800 domain-containing protein | - |
| CDCF5_RS07950 () | 1718173..1718508 | + | 336 | WP_003429820.1 | hypothetical protein | - |
| CDCF5_RS07955 () | 1718561..1719133 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDCF5_RS07960 () | 1719156..1719728 | + | 573 | WP_003429823.1 | DUF2815 family protein | - |
| CDCF5_RS07965 () | 1719728..1721686 | + | 1959 | WP_003429824.1 | DNA polymerase | - |
| CDCF5_RS07970 () | 1721698..1724115 | + | 2418 | WP_003429825.1 | virulence-associated E family protein | - |
| CDCF5_RS07975 () | 1724397..1724723 | + | 327 | WP_003429828.1 | VRR-NUC domain-containing protein | - |
| CDCF5_RS07980 () | 1724672..1726042 | + | 1371 | WP_003429829.1 | DEAD/DEAH box helicase | - |
| CDCF5_RS07985 () | 1726066..1726203 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDCF5_RS07990 () | 1726196..1726675 | + | 480 | WP_003429831.1 | hypothetical protein | - |
| CDCF5_RS07995 () | 1727150..1727386 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDCF5_RS08000 () | 1727689..1728663 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDCF5_RS08005 () | 1728684..1729193 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDCF5_RS08010 () | 1729264..1729956 | + | 693 | WP_003429835.1 | helix-turn-helix domain-containing protein | - |
| CDCF5_RS08015 () | 1729934..1731187 | + | 1254 | WP_003429836.1 | PBSX family phage terminase large subunit | - |
| CDCF5_RS08020 () | 1731193..1732632 | + | 1440 | WP_003429837.1 | phage portal protein | - |
| CDCF5_RS08025 () | 1732622..1734115 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDCF5_RS08030 () | 1734081..1734323 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CDCF5_RS08035 () | 1734632..1735195 | + | 564 | WP_003429840.1 | phage scaffolding protein | - |
| CDCF5_RS08040 () | 1735207..1736106 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDCF5_RS08045 () | 1736106..1736339 | + | 234 | WP_003429842.1 | hypothetical protein | - |
| CDCF5_RS08050 () | 1736349..1736750 | + | 402 | WP_021379034.1 | hypothetical protein | - |
| CDCF5_RS08055 () | 1736744..1737091 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| CDCF5_RS08060 () | 1737091..1737516 | + | 426 | WP_003429845.1 | HK97 gp10 family phage protein | - |
| CDCF5_RS08065 () | 1737509..1737946 | + | 438 | WP_003429846.1 | hypothetical protein | - |
| CDCF5_RS08070 () | 1737939..1738115 | + | 177 | WP_021358991.1 | hypothetical protein | - |
| CDCF5_RS08075 () | 1738117..1739427 | + | 1311 | WP_003429848.1 | phage tail sheath family protein | - |
| CDCF5_RS08080 () | 1739444..1739914 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDCF5_RS08085 () | 1739986..1740426 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDCF5_RS08090 () | 1740767..1740928 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1740848..1740981 | - | 134 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1740848..1740981 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1741326..1741374 | - | 49 | NuclAT_5 | - | - |
| - () | 1741326..1741374 | - | 49 | NuclAT_7 | - | - |
| - () | 1742438..1742543 | - | 106 | NuclAT_4 | - | - |
| - () | 1742438..1742543 | - | 106 | NuclAT_6 | - | - |
| CDCF5_RS08095 () | 1743891..1744079 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDCF5_RS08100 () | 1744198..1745064 | + | 867 | Protein_1546 | phage repressor protein | - |
| CDCF5_RS08105 () | 1745127..1745303 | + | 177 | WP_003429861.1 | hypothetical protein | - |
| CDCF5_RS08110 () | 1745735..1746295 | + | 561 | WP_032512002.1 | ribosomal protein L7/L12 | - |
| CDCF5_RS08115 () | 1746373..1748739 | + | 2367 | WP_003429863.1 | tape measure protein | - |
| CDCF5_RS08120 () | 1748756..1749445 | + | 690 | WP_003429864.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDCF5_RS08125 () | 1749438..1751330 | + | 1893 | WP_003429865.1 | hypothetical protein | VF |
| CDCF5_RS08130 () | 1751344..1751604 | + | 261 | WP_003429866.1 | DUF2577 domain-containing protein | - |
| CDCF5_RS08135 () | 1751609..1752028 | + | 420 | WP_003429867.1 | DUF2634 domain-containing protein | - |
| CDCF5_RS08140 () | 1752029..1753078 | + | 1050 | WP_032512003.1 | baseplate J/gp47 family protein | - |
| CDCF5_RS08145 () | 1753071..1753688 | + | 618 | WP_003429870.1 | YmfQ family protein | - |
| CDCF5_RS08150 () | 1753700..1754692 | + | 993 | WP_074080337.1 | phage tail protein | - |
| CDCF5_RS08155 () | 1754709..1756019 | + | 1311 | Protein_1557 | hypothetical protein | - |
| CDCF5_RS08160 () | 1756442..1756789 | + | 348 | WP_003429875.1 | hypothetical protein | - |
| CDCF5_RS08165 () | 1756801..1756971 | + | 171 | WP_003429877.1 | hypothetical protein | - |
| CDCF5_RS08170 () | 1757002..1757568 | + | 567 | WP_021373459.1 | hypothetical protein | - |
| CDCF5_RS08175 () | 1757599..1757889 | + | 291 | WP_021363500.1 | hypothetical protein | - |
| CDCF5_RS08180 () | 1757893..1758150 | + | 258 | WP_074080336.1 | phage holin family protein | - |
| CDCF5_RS08185 () | 1758411..1759274 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CDCF5_RS08190 () | 1759353..1760165 | + | 813 | WP_074080335.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDCF5_RS08195 () | 1760407..1761132 | + | 726 | WP_003429962.1 | hypothetical protein | - |
| CDCF5_RS08200 () | 1761145..1761987 | + | 843 | WP_050542813.1 | Serine/threonine-protein kinase PknD | VF |
| CDCF5_RS08205 () | 1761995..1763200 | + | 1206 | WP_003429967.1 | hypothetical protein | - |
| CDCF5_RS08210 () | 1763978..1764655 | + | 678 | WP_003429969.1 | manganese catalase family protein | - |
| CDCF5_RS08215 () | 1764829..1766865 | + | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| CDCF5_RS08220 () | 1767058..1767623 | - | 566 | Protein_1570 | MarR family transcriptional regulator | - |
| CDCF5_RS08225 () | 1767910..1768848 | + | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| CDCF5_RS08230 () | 1769229..1769963 | + | 735 | WP_021387870.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CDCF5_RS08235 () | 1769986..1772115 | + | 2130 | WP_003433668.1 | ABC transporter permease | - |
| CDCF5_RS08240 () | 1772332..1773546 | + | 1215 | WP_003429978.1 | ISNCY family transposase ISH7A | Transposase |
| CDCF5_RS08245 () | 1773968..1774489 | - | 522 | WP_021387871.1 | GNAT family N-acetyltransferase | - |
| CDCF5_RS08250 () | 1774845..1775642 | + | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| CDCF5_RS08255 () | 1775752..1776342 | + | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| CDCF5_RS08260 () | 1776408..1778105 | + | 1698 | WP_021393310.1 | hypothetical protein | VF |
| CDCF5_RS08265 () | 1778319..1779158 | + | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
| CDCF5_RS08270 () | 1779676..1781532 | + | 1857 | WP_003429992.1 | PAS domain-containing protein | - |
| CDCF5_RS08275 () | 1782240..1783457 | + | 1218 | WP_003429993.1 | homoserine dehydrogenase | - |
| CDCF5_RS08280 () | 1783574..1784056 | + | 483 | WP_003429994.1 | exosporium morphogenetic protein CdeM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|