MGE detailed information
MGE type: Prophage MGE length: 19745 bp
Accession: NZ_CP011968 Location: 2513473..2533217 Organism: Clostridioides difficile ATCC 9689 = DSM 1296 Replicon: chromosome
Accession: NZ_CP011968 Location: 2513473..2533217 Organism: Clostridioides difficile ATCC 9689 = DSM 1296 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF1296T_RS12050 () | 2508690..2509391 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF1296T_RS12055 () | 2509384..2509707 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF1296T_RS12060 () | 2509913..2511982 | - | 2070 | WP_011861512.1 | sensor histidine kinase | - |
| CDIF1296T_RS12065 () | 2511988..2512194 | - | 207 | WP_003433254.1 | hypothetical protein | - |
| CDIF1296T_RS12070 () | 2512169..2512861 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF1296T_RS12075 () | 2513473..2513847 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF1296T_RS12080 () | 2514066..2514299 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF1296T_RS12085 () | 2514283..2514696 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CDIF1296T_RS12090 () | 2514715..2515011 | + | 297 | WP_009897463.1 | hypothetical protein | - |
| CDIF1296T_RS12095 () | 2515294..2515611 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CDIF1296T_RS12100 () | 2515747..2516211 | + | 465 | WP_009897467.1 | hypothetical protein | - |
| CDIF1296T_RS12105 () | 2516240..2516464 | - | 225 | Protein_2307 | cell wall-binding repeat-containing protein | - |
| CDIF1296T_RS12110 () | 2516539..2516700 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF1296T_RS12115 () | 2516752..2517147 | - | 396 | WP_021368711.1 | hypothetical protein | - |
| CDIF1296T_RS12120 () | 2517201..2517566 | - | 366 | WP_009897471.1 | Bro-N domain-containing protein | - |
| CDIF1296T_RS12125 () | 2518821..2519705 | - | 885 | WP_009897481.1 | hypothetical protein | - |
| - () | 2519849..2519978 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| CDIF1296T_RS12130 () | 2519899..2520051 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF1296T_RS12135 () | 2520325..2520657 | - | 333 | WP_004454591.1 | hypothetical protein | - |
| CDIF1296T_RS12140 () | 2520684..2520938 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF1296T_RS12145 () | 2521079..2521246 | - | 168 | Protein_2315 | hypothetical protein | - |
| CDIF1296T_RS12150 () | 2521370..2521888 | - | 519 | Protein_2316 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF1296T_RS12155 () | 2522178..2522551 | - | 374 | Protein_2317 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF1296T_RS12160 () | 2522656..2523030 | - | 375 | WP_004454597.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF1296T_RS12165 () | 2523834..2524322 | + | 489 | WP_009897487.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF1296T_RS12170 () | 2524711..2524881 | + | 171 | WP_021394397.1 | hypothetical protein | - |
| CDIF1296T_RS12175 () | 2525358..2525547 | - | 190 | Protein_2321 | IS3 family transposase ISEfa10 | Transposase |
| CDIF1296T_RS12180 () | 2525709..2526059 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF1296T_RS12185 () | 2526061..2526261 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| CDIF1296T_RS12190 () | 2526584..2526760 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF1296T_RS12195 () | 2526985..2527185 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF1296T_RS12200 () | 2527820..2528632 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF1296T_RS12205 () | 2528642..2529433 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| CDIF1296T_RS12210 () | 2529435..2530130 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| CDIF1296T_RS12215 () | 2530117..2530848 | + | 732 | WP_009897498.1 | membrane protein | - |
| CDIF1296T_RS12220 () | 2531162..2531962 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF1296T_RS12225 () | 2532501..2533217 | + | 717 | WP_004454617.1 | Transcriptional regulatory protein WalR | VF |
| CDIF1296T_RS12230 () | 2533198..2534775 | + | 1578 | WP_074048512.1 | sensor histidine kinase | - |
| CDIF1296T_RS12235 () | 2535087..2536589 | - | 1503 | WP_009897501.1 | phosphoglucomutase | - |
| CDIF1296T_RS12240 () | 2536699..2537364 | - | 666 | WP_003430699.1 | ribulose-phosphate 3-epimerase | - |
| CDIF1296T_RS12245 () | 2537394..2537840 | - | 447 | WP_003430700.1 | ribose 5-phosphate isomerase B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|