MGE detailed information
MGE type: Prophage MGE length: 66548 bp
Accession: NZ_CP016104 Location: 1725462..1792009 Organism: Clostridioides difficile strain DSM 29629 Replicon: chromosome
Accession: NZ_CP016104 Location: 1725462..1792009 Organism: Clostridioides difficile strain DSM 29629 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29629_RS08200 () | 1720533..1721294 | + | 762 | WP_003429799.1 | M48 family metallopeptidase | - |
| CDIF29629_RS08205 () | 1721825..1722064 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF29629_RS08210 () | 1722368..1723363 | + | 996 | WP_074048058.1 | ketol-acid reductoisomerase | - |
| CDIF29629_RS08215 () | 1723416..1725104 | + | 1689 | WP_070116955.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF29629_RS08220 () | 1725462..1726592 | - | 1131 | WP_022617008.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF29629_RS08225 () | 1726832..1727338 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29629_RS08230 () | 1727415..1727963 | - | 549 | WP_074048060.1 | helix-turn-helix domain-containing protein | - |
| CDIF29629_RS08235 () | 1727975..1728316 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDIF29629_RS08240 () | 1728493..1728696 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDIF29629_RS08245 () | 1728744..1729553 | + | 810 | Protein_1500 | phage antirepressor | - |
| CDIF29629_RS08250 () | 1729732..1729911 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| CDIF29629_RS08255 () | 1730047..1730226 | + | 180 | WP_003429812.1 | hypothetical protein | - |
| CDIF29629_RS08260 () | 1730219..1731022 | + | 804 | WP_070116956.1 | ORF6N domain-containing protein | - |
| CDIF29629_RS08265 () | 1730994..1731671 | + | 678 | WP_003429814.1 | hypothetical protein | - |
| CDIF29629_RS08270 () | 1731807..1731989 | + | 183 | WP_095895284.1 | hypothetical protein | - |
| CDIF29629_RS08280 () | 1732151..1732543 | + | 393 | WP_003429816.1 | helix-turn-helix domain-containing protein | - |
| CDIF29629_RS19030 () | 1732524..1732673 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDIF29629_RS08285 () | 1732744..1733181 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF29629_RS08290 () | 1733193..1734359 | + | 1167 | WP_003433514.1 | DUF2800 domain-containing protein | - |
| CDIF29629_RS08295 () | 1734374..1734709 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDIF29629_RS08300 () | 1734762..1735334 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF29629_RS08305 () | 1735357..1735929 | + | 573 | WP_003429823.1 | DUF2815 family protein | - |
| CDIF29629_RS08310 () | 1735929..1737887 | + | 1959 | WP_009904230.1 | DNA polymerase | - |
| CDIF29629_RS08315 () | 1737899..1740316 | + | 2418 | WP_070116958.1 | virulence-associated E family protein | - |
| CDIF29629_RS08320 () | 1740598..1740924 | + | 327 | WP_003429828.1 | VRR-NUC domain-containing protein | - |
| CDIF29629_RS08325 () | 1740873..1742243 | + | 1371 | WP_043897196.1 | DEAD/DEAH box helicase | - |
| CDIF29629_RS19090 () | 1742267..1742404 | + | 138 | WP_165487342.1 | hypothetical protein | - |
| CDIF29629_RS08330 () | 1742397..1742876 | + | 480 | WP_003433526.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF29629_RS08335 () | 1743362..1743598 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDIF29629_RS08340 () | 1743899..1744873 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDIF29629_RS19035 () | 1744894..1745403 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF29629_RS08355 () | 1745474..1746166 | + | 693 | WP_003429835.1 | helix-turn-helix domain-containing protein | - |
| CDIF29629_RS08360 () | 1746144..1747397 | + | 1254 | WP_070116959.1 | PBSX family phage terminase large subunit | - |
| CDIF29629_RS08365 () | 1747403..1748842 | + | 1440 | WP_070116960.1 | phage portal protein | - |
| CDIF29629_RS08370 () | 1748832..1750229 | + | 1398 | WP_070116962.1 | minor capsid protein | - |
| CDIF29629_RS08375 () | 1750244..1750444 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF29629_RS08380 () | 1750510..1751073 | + | 564 | WP_009896620.1 | phage scaffolding protein | - |
| CDIF29629_RS08385 () | 1751085..1751984 | + | 900 | WP_070116963.1 | capsid protein | - |
| CDIF29629_RS08390 () | 1751984..1752217 | + | 234 | WP_070113070.1 | hypothetical protein | - |
| CDIF29629_RS08395 () | 1752227..1752628 | + | 402 | WP_021363493.1 | hypothetical protein | - |
| CDIF29629_RS08400 () | 1752622..1752969 | + | 348 | WP_070113072.1 | hypothetical protein | - |
| CDIF29629_RS08405 () | 1752969..1753394 | + | 426 | WP_038812299.1 | HK97 gp10 family phage protein | - |
| CDIF29629_RS08410 () | 1753387..1753824 | + | 438 | WP_003433544.1 | hypothetical protein | - |
| CDIF29629_RS08415 () | 1753817..1753993 | + | 177 | WP_070112848.1 | hypothetical protein | - |
| CDIF29629_RS08420 () | 1753994..1755304 | + | 1311 | WP_070116964.1 | phage tail sheath family protein | - |
| CDIF29629_RS08425 () | 1755321..1755791 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF29629_RS08430 () | 1755863..1756303 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF29629_RS08440 () | 1756644..1756805 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1756725..1756858 | - | 134 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1756725..1756858 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1757203..1757251 | - | 49 | NuclAT_5 | - | - |
| - () | 1757203..1757251 | - | 49 | NuclAT_7 | - | - |
| - () | 1758358..1758463 | - | 106 | NuclAT_4 | - | - |
| - () | 1758358..1758463 | - | 106 | NuclAT_6 | - | - |
| CDIF29629_RS08445 () | 1759679..1759849 | + | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| CDIF29629_RS08450 () | 1759977..1760819 | + | 843 | WP_074048061.1 | hypothetical protein | - |
| CDIF29629_RS08455 () | 1760872..1761030 | + | 159 | WP_021401161.1 | hypothetical protein | - |
| CDIF29629_RS08460 () | 1761588..1762370 | + | 783 | WP_070112852.1 | SHOCT domain-containing protein | - |
| CDIF29629_RS08465 () | 1762434..1764785 | + | 2352 | WP_070116965.1 | tape measure protein | - |
| CDIF29629_RS08470 () | 1764801..1765490 | + | 690 | WP_070116967.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29629_RS08475 () | 1765483..1767447 | + | 1965 | WP_070116968.1 | Murein DD-endopeptidase MepH | VF |
| CDIF29629_RS08480 () | 1767461..1767721 | + | 261 | WP_003433573.1 | DUF2577 domain-containing protein | - |
| CDIF29629_RS08485 () | 1767726..1768145 | + | 420 | WP_003433575.1 | DUF2634 domain-containing protein | - |
| CDIF29629_RS08490 () | 1768146..1769195 | + | 1050 | WP_070116970.1 | baseplate J/gp47 family protein | - |
| CDIF29629_RS08495 () | 1769188..1769805 | + | 618 | WP_070116972.1 | YmfQ family protein | - |
| CDIF29629_RS08500 () | 1769817..1770809 | + | 993 | WP_070116973.1 | phage tail protein | - |
| CDIF29629_RS08505 () | 1770824..1772476 | + | 1653 | WP_070116974.1 | hypothetical protein | - |
| CDIF29629_RS08510 () | 1772501..1772848 | + | 348 | WP_070116975.1 | hypothetical protein | - |
| CDIF29629_RS19095 () | 1772860..1773030 | + | 171 | WP_171902982.1 | hypothetical protein | - |
| CDIF29629_RS08515 () | 1773064..1773255 | + | 192 | WP_070116977.1 | hypothetical protein | - |
| CDIF29629_RS08520 () | 1773268..1773855 | + | 588 | WP_070116978.1 | hypothetical protein | - |
| CDIF29629_RS08525 () | 1773868..1774173 | + | 306 | WP_070116979.1 | hypothetical protein | - |
| CDIF29629_RS08530 () | 1774173..1774355 | + | 183 | WP_070116981.1 | hypothetical protein | - |
| CDIF29629_RS08535 () | 1774391..1774621 | + | 231 | WP_070116982.1 | hemolysin XhlA family protein | - |
| CDIF29629_RS08540 () | 1774641..1774898 | + | 258 | WP_021363501.1 | phage holin family protein | - |
| CDIF29629_RS08545 () | 1775159..1776022 | + | 864 | WP_070116983.1 | Abi family protein | - |
| CDIF29629_RS08550 () | 1776101..1776913 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29629_RS08555 () | 1777007..1779406 | + | 2400 | WP_021394082.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CDIF29629_RS08560 () | 1779448..1779633 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF29629_RS08565 () | 1780344..1781021 | + | 678 | WP_003429969.1 | manganese catalase family protein | - |
| CDIF29629_RS08570 () | 1781195..1783231 | + | 2037 | WP_070116984.1 | thioredoxin domain-containing protein | - |
| CDIF29629_RS08575 () | 1783424..1783990 | - | 567 | WP_003429973.1 | MarR family transcriptional regulator | - |
| CDIF29629_RS08580 () | 1784277..1785215 | + | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| CDIF29629_RS08585 () | 1785596..1786363 | + | 768 | WP_022617043.1 | Bacitracin export ATP-binding protein BceA | VF |
| CDIF29629_RS08590 () | 1786353..1788482 | + | 2130 | WP_003433668.1 | ABC transporter permease | - |
| CDIF29629_RS08595 () | 1788699..1789913 | + | 1215 | WP_070116986.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF29629_RS08600 () | 1790335..1790856 | - | 522 | WP_070112442.1 | GNAT family N-acetyltransferase | - |
| CDIF29629_RS08605 () | 1791212..1792009 | + | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| CDIF29629_RS08610 () | 1792119..1792709 | + | 591 | WP_070116987.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF29629_RS08615 () | 1792775..1794472 | + | 1698 | WP_070121532.1 | phospho-sugar mutase | - |
| CDIF29629_RS08620 () | 1794686..1795525 | + | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|