MGE detailed information
MGE type: Prophage MGE length: 16865 bp
Accession: NZ_CP025046 Location: 2411493..2428357 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Accession: NZ_CP025046 Location: 2411493..2428357 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR55_RS11435 () | 2406710..2407411 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CWR55_RS11440 () | 2407404..2407727 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CWR55_RS11445 () | 2407933..2409993 | - | 2061 | WP_021362720.1 | sensor histidine kinase | - |
| CWR55_RS11455 () | 2410189..2410881 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CWR55_RS11460 () | 2411493..2411867 | - | 375 | WP_004454568.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS11465 () | 2412086..2412319 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CWR55_RS11470 () | 2412303..2412716 | + | 414 | WP_004454570.1 | hypothetical protein | - |
| CWR55_RS11475 () | 2412735..2413031 | + | 297 | WP_009903134.1 | hypothetical protein | - |
| CWR55_RS11480 () | 2413314..2413631 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CWR55_RS11485 () | 2413767..2414231 | + | 465 | WP_004454576.1 | hypothetical protein | - |
| CWR55_RS11495 () | 2414560..2414721 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CWR55_RS19840 () | 2414773..2415587 | - | 815 | Protein_2173 | toxin Bro | - |
| CWR55_RS19845 () | 2415707..2415859 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| CWR55_RS11510 () | 2416998..2417921 | - | 924 | WP_021364626.1 | SHOCT domain-containing protein | - |
| - () | 2418065..2418194 | + | 130 | NuclAT_5 | - | Antitoxin Detail |
| CWR55_RS11515 () | 2418115..2418267 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CWR55_RS11520 () | 2418541..2418864 | - | 324 | WP_021364628.1 | hypothetical protein | - |
| CWR55_RS11525 () | 2418900..2419154 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CWR55_RS11535 () | 2419586..2420104 | - | 519 | Protein_2179 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CWR55_RS11540 () | 2420394..2420768 | - | 375 | Protein_2180 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS11545 () | 2420873..2421250 | - | 378 | WP_021364350.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS11550 () | 2422055..2422549 | + | 495 | WP_021364347.1 | Type II secretion system protein G | VF |
| CWR55_RS19760 () | 2422938..2423108 | + | 171 | WP_021416406.1 | hypothetical protein | - |
| CWR55_RS11560 () | 2423585..2423774 | - | 190 | Protein_2184 | IS3 family transposase ISEfa10 | Transposase |
| CWR55_RS11565 () | 2423936..2424286 | + | 351 | WP_021364349.1 | DUF3796 domain-containing protein | - |
| CWR55_RS11570 () | 2424288..2424488 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| CWR55_RS11575 () | 2424811..2424987 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CWR55_RS11580 () | 2425212..2425412 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CWR55_RS11585 () | 2426047..2426859 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CWR55_RS11590 () | 2426869..2427660 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| CWR55_RS11595 () | 2427662..2428357 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| CWR55_RS11600 () | 2428344..2429075 | + | 732 | WP_009897498.1 | membrane protein | - |
| CWR55_RS11605 () | 2429389..2430189 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CWR55_RS11610 () | 2430728..2431444 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CWR55_RS11615 () | 2431413..2433002 | + | 1590 | WP_021364639.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.009 |