MGE detailed information
MGE type: Prophage MGE length: 52962 bp
Accession: NZ_CP010905 Location: 3360426..3413387 Organism: Clostridioides difficile 630 Replicon: chromosome
Accession: NZ_CP010905 Location: 3360426..3413387 Organism: Clostridioides difficile 630 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF630_RS15795 () | 3355892..3357205 | - | 1314 | WP_003439696.1 | PTS sugar transporter subunit IIC | - |
| CDIF630_RS15800 () | 3357227..3357538 | - | 312 | WP_003422688.1 | PTS sugar transporter subunit IIB | - |
| CDIF630_RS15805 () | 3357738..3358442 | - | 705 | WP_003426754.1 | GntR family transcriptional regulator | - |
| CDIF630_RS15810 () | 3358533..3359894 | - | 1362 | WP_011861729.1 | MATE family efflux transporter | - |
| CDIF630_RS15815 () | 3360393..3361547 | + | 1155 | WP_003439713.1 | GGDEF domain-containing protein | - |
| CDIF630_RS15820 () | 3361628..3363346 | - | 1719 | WP_011861730.1 | putative 2-aminoethylphosphonate ABC transporter permease subunit | - |
| CDIF630_RS15825 () | 3363351..3364232 | - | 882 | Protein_2976 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| - () | 3364734..3364880 | + | 147 | NuclAT_2 | - | Antitoxin Detail |
| - () | 3364734..3364884 | + | 151 | NuclAT_1 | - | - |
| CDIF630_RS20600 () | 3364806..3364949 | - | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| CDIF630_RS15835 () | 3365207..3365395 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF630_RS15840 () | 3365642..3366346 | - | 705 | WP_011861732.1 | hypothetical protein | - |
| CDIF630_RS15845 () | 3366348..3366779 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CDIF630_RS15850 () | 3366797..3367360 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| CDIF630_RS15855 () | 3367906..3368202 | - | 297 | WP_011861049.1 | hypothetical protein | - |
| CDIF630_RS15860 () | 3368219..3369034 | - | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF630_RS15865 () | 3369031..3369291 | - | 261 | WP_011861047.1 | phage holin family protein | - |
| CDIF630_RS15870 () | 3369311..3369541 | - | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CDIF630_RS15875 () | 3369576..3369758 | - | 183 | WP_011861045.1 | hypothetical protein | - |
| CDIF630_RS15880 () | 3369758..3370051 | - | 294 | WP_011861044.1 | hypothetical protein | - |
| CDIF630_RS15885 () | 3370068..3371765 | - | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CDIF630_RS15890 () | 3371783..3372586 | - | 804 | WP_011861042.1 | phage tail protein | - |
| CDIF630_RS15895 () | 3372598..3373215 | - | 618 | WP_011861041.1 | YmfQ family protein | - |
| CDIF630_RS15900 () | 3373208..3374257 | - | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CDIF630_RS15905 () | 3374258..3374677 | - | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CDIF630_RS15910 () | 3374682..3374942 | - | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF630_RS15915 () | 3374956..3376926 | - | 1971 | WP_011861038.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF630_RS15920 () | 3376919..3377608 | - | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF630_RS15925 () | 3377624..3379975 | - | 2352 | WP_011861036.1 | tape measure protein | - |
| CDIF630_RS15930 () | 3380046..3380615 | - | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CDIF630_RS15935 () | 3380659..3381219 | - | 561 | WP_011861034.1 | lipoprotein | - |
| - () | 3382380..3382485 | + | 106 | NuclAT_12 | - | - |
| - () | 3382380..3382485 | + | 106 | NuclAT_14 | - | - |
| - () | 3382830..3382963 | + | 134 | NuclAT_6 | - | Antitoxin Detail |
| - () | 3382830..3382963 | + | 134 | NuclAT_8 | - | Antitoxin Detail |
| CDIF630_RS20605 () | 3382883..3383044 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| CDIF630_RS15950 () | 3383385..3383825 | - | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF630_RS15955 () | 3383897..3384367 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF630_RS15960 () | 3384384..3385694 | - | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CDIF630_RS20610 () | 3385696..3385872 | - | 177 | WP_011861031.1 | hypothetical protein | - |
| CDIF630_RS15970 () | 3385865..3386302 | - | 438 | WP_009901504.1 | hypothetical protein | - |
| CDIF630_RS15975 () | 3386295..3386720 | - | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CDIF630_RS15980 () | 3386720..3387067 | - | 348 | WP_003429844.1 | hypothetical protein | - |
| CDIF630_RS15985 () | 3387061..3387462 | - | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF630_RS15990 () | 3387472..3387705 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF630_RS15995 () | 3387705..3388604 | - | 900 | WP_011861029.1 | phage capsid protein | - |
| CDIF630_RS16000 () | 3388616..3389179 | - | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CDIF630_RS16005 () | 3389489..3389731 | - | 243 | WP_009901430.1 | hypothetical protein | - |
| CDIF630_RS16010 () | 3389697..3391190 | - | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDIF630_RS16015 () | 3391180..3392619 | - | 1440 | WP_011861027.1 | phage portal protein | - |
| CDIF630_RS16020 () | 3392625..3393878 | - | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CDIF630_RS16025 () | 3393856..3394548 | - | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CDIF630_RS16030 () | 3394618..3394845 | - | 228 | WP_009894744.1 | hypothetical protein | - |
| CDIF630_RS16035 () | 3394969..3395286 | + | 318 | WP_009894743.1 | hypothetical protein | - |
| CDIF630_RS16040 () | 3395266..3395454 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| CDIF630_RS16045 () | 3395531..3396142 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| CDIF630_RS20615 () | 3396142..3396315 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| CDIF630_RS16060 () | 3397134..3398297 | - | 1164 | WP_032506905.1 | XRE family transcriptional regulator | - |
| CDIF630_RS16065 () | 3398316..3399071 | - | 756 | WP_011861735.1 | hypothetical protein | - |
| CDIF630_RS16075 () | 3399392..3399880 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CDIF630_RS16080 () | 3399974..3400714 | - | 741 | WP_011861736.1 | anti-repressor protein | - |
| CDIF630_RS16085 () | 3400777..3401184 | - | 408 | WP_011861737.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF630_RS16090 () | 3401174..3401572 | - | 399 | WP_011861738.1 | hypothetical protein | - |
| CDIF630_RS16100 () | 3401715..3402041 | - | 327 | WP_011861739.1 | peptide chain release factor-like protein | - |
| CDIF630_RS16105 () | 3402112..3402483 | - | 372 | WP_011861740.1 | hypothetical protein | - |
| CDIF630_RS20620 () | 3402476..3402649 | - | 174 | WP_011861741.1 | hypothetical protein | - |
| CDIF630_RS16115 () | 3402658..3403041 | - | 384 | WP_011861742.1 | DUF1653 domain-containing protein | - |
| CDIF630_RS16120 () | 3403053..3404048 | - | 996 | WP_011861743.1 | nucleoid-associated protein | - |
| CDIF630_RS16125 () | 3404143..3404418 | - | 276 | WP_011861744.1 | hypothetical protein | - |
| CDIF630_RS20350 () | 3404470..3404628 | - | 159 | WP_018112752.1 | hypothetical protein | - |
| CDIF630_RS16135 () | 3404747..3404920 | - | 174 | WP_021359693.1 | DUF3797 domain-containing protein | - |
| CDIF630_RS20625 () | 3404917..3405057 | - | 141 | WP_021359694.1 | hypothetical protein | - |
| CDIF630_RS16145 () | 3405026..3405406 | - | 381 | WP_011861745.1 | hypothetical protein | - |
| CDIF630_RS16150 () | 3405410..3405775 | - | 366 | WP_021398171.1 | hypothetical protein | - |
| CDIF630_RS16155 () | 3405772..3406035 | - | 264 | WP_011861747.1 | hypothetical protein | - |
| CDIF630_RS16160 () | 3406109..3406525 | - | 417 | WP_011861748.1 | single-stranded DNA-binding protein | - |
| CDIF630_RS16165 () | 3406541..3406714 | - | 174 | WP_011861749.1 | resolvase | - |
| CDIF630_RS16170 () | 3406774..3407724 | - | 951 | WP_011861750.1 | DnaD domain protein | - |
| CDIF630_RS16175 () | 3407733..3408323 | - | 591 | WP_011861751.1 | ERF family protein | - |
| CDIF630_RS16180 () | 3408333..3408842 | - | 510 | WP_011861752.1 | siphovirus Gp157 family protein | - |
| CDIF630_RS16185 () | 3408928..3409245 | - | 318 | WP_011861753.1 | hypothetical protein | - |
| CDIF630_RS16190 () | 3409345..3409572 | - | 228 | WP_021391119.1 | hypothetical protein | - |
| CDIF630_RS16195 () | 3409547..3409735 | - | 189 | WP_011861755.1 | hypothetical protein | - |
| CDIF630_RS16200 () | 3409801..3410595 | - | 795 | WP_011861756.1 | ORF6N domain-containing protein | - |
| CDIF630_RS16205 () | 3410643..3410864 | - | 222 | WP_011861757.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630_RS16210 () | 3411018..3411473 | + | 456 | WP_011861758.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630_RS16215 () | 3411491..3411964 | + | 474 | WP_011861759.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF630_RS16220 () | 3412029..3413387 | + | 1359 | WP_011861760.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CDIF630_RS20310 () | 3413410..3413526 | - | 117 | Protein_3052 | putative 2-aminoethylphosphonate ABC transporter ATP-binding protein | - |
| CDIF630_RS16225 () | 3413622..3414671 | - | 1050 | WP_011861761.1 | putative 2-aminoethylphosphonate ABC transporter substrate-binding protein | - |
| CDIF630_RS16230 () | 3414948..3415616 | - | 669 | WP_009891221.1 | V-type ATP synthase subunit D | - |
| CDIF630_RS16235 () | 3415622..3416995 | - | 1374 | WP_003422669.1 | V-type ATP synthase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10081, TA10084, TA10172 | NC_009089 | 3375898..3428859 | 0 |