NZ_CP0198581693357..1834285

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 140929 bp
Accession: NZ_CP019858        Location: 1693357..1834285         Organism: Clostridioides difficile strain DSM 29688       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDIF29688_RS08425 () 1689150..1690544 + 1395 WP_021366576.1 NADPH-dependent glutamate synthase -
CDIF29688_RS08430 () 1690910..1693129 + 2220 WP_021366594.1 EAL domain-containing protein -
CDIF29688_RS08435 () 1693276..1694022 + 747 WP_021390148.1 ABC transporter ATP-binding protein -
CDIF29688_RS08440 () 1694022..1695902 + 1881 WP_021390149.1 ABC transporter permease -
CDIF29688_RS08445 () 1696021..1697412 + 1392 WP_003436703.1 MATE family efflux transporter -
CDIF29688_RS08450 () 1697519..1698559 + 1041 WP_021366578.1 Fic family protein -
CDIF29688_RS08455 () 1699048..1699701 + 654 WP_021366597.1 NAD(P)H-dependent oxidoreductase -
CDIF29688_RS08460 () 1699777..1699986 + 210 WP_003429769.1 hypothetical protein -
CDIF29688_RS08465 () 1700126..1700692 - 567 WP_021366585.1 DUF1836 domain-containing protein -
CDIF29688_RS08470 () 1700853..1701506 + 654 WP_003436685.1 hypothetical protein VF
CDIF29688_RS08475 () 1701664..1701840 - 177 WP_003420092.1 hypothetical protein -
CDIF29688_RS08480 () 1702368..1703312 + 945 WP_021390150.1 ATP phosphoribosyltransferase regulatory subunit -
CDIF29688_RS08485 () 1703334..1703960 + 627 WP_003436683.1 ATP phosphoribosyltransferase -
CDIF29688_RS08490 () 1703994..1705043 + 1050 WP_021366580.1 Histidinol-phosphate aminotransferase VF
CDIF29688_RS08495 () 1705046..1705624 + 579 WP_003436680.1 imidazoleglycerol-phosphate dehydratase HisB -
CDIF29688_RS08500 () 1705626..1706231 + 606 WP_003436678.1 imidazole glycerol phosphate synthase subunit HisH -
CDIF29688_RS08505 () 1706228..1706950 + 723 WP_003436675.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -
CDIF29688_RS08510 () 1706932..1707690 + 759 WP_003436672.1 imidazole glycerol phosphate synthase subunit HisF -
CDIF29688_RS08515 () 1707718..1708386 + 669 WP_003436669.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE -
CDIF29688_RS08520 () 1709188..1710516 + 1329 WP_011861250.1 amino acid permease -
CDIF29688_RS08525 () 1711269..1712102 + 834 WP_009902571.1 Peptidoglycan-N-acetylmuramic acid deacetylase PdaC VF
CDIF29688_RS08530 () 1712195..1713127 + 933 WP_169460749.1 peptidylprolyl isomerase -
CDIF29688_RS08535 () 1713179..1713661 + 483 WP_003436663.1 sigma-70 family RNA polymerase sigma factor -
CDIF29688_RS08540 () 1713673..1714542 + 870 WP_003436661.1 anti-sigma-V factor rsiV -
CDIF29688_RS08545 () 1714585..1715340 + 756 WP_021366596.1 DUF3298 and DUF4163 domain-containing protein -
CDIF29688_RS08550 () 1715382..1716203 + 822 WP_009902575.1 xanthine dehydrogenase accessory factor -
CDIF29688_RS08555 () 1716208..1716969 + 762 WP_021366588.1 M48 family metallopeptidase -
CDIF29688_RS08560 () 1717500..1717739 + 240 WP_003429800.1 ACT domain-containing protein -
CDIF29688_RS08565 () 1718043..1719038 + 996 WP_074033748.1 ketol-acid reductoisomerase -
CDIF29688_RS08570 () 1719091..1720779 + 1689 WP_021366589.1 biosynthetic-type acetolactate synthase large subunit -
CDIF29688_RS08575 () 1721138..1722268 - 1131 WP_118661336.1 Putative prophage phiRv2 integrase ; Integrase Integrase
CDIF29688_RS08580 () 1722508..1723014 - 507 WP_003429804.1 ImmA/IrrE family metallo-endopeptidase -
CDIF29688_RS08585 () 1723277..1724866 - 1590 WP_003429805.1 SIR2 family protein -
CDIF29688_RS08590 () 1724890..1725453 - 564 WP_003429806.1 XRE family transcriptional regulator -
CDIF29688_RS08595 () 1725606..1725827 + 222 WP_003429807.1 ISNCY family transposase ISH7A Transposase
CDIF29688_RS08600 () 1725830..1726645 + 816 WP_021366595.1 phage regulatory protein/antirepressor Ant -
CDIF29688_RS08605 () 1726824..1727003 - 180 WP_003429811.1 Arc family DNA-binding protein -
CDIF29688_RS08610 () 1727139..1727318 + 180 WP_003429812.1 hypothetical protein -
CDIF29688_RS08615 () 1727311..1728102 + 792 WP_021367758.1 ORF6N domain-containing protein -
CDIF29688_RS08620 () 1728185..1728379 - 195 WP_021368281.1 hypothetical protein -
CDIF29688_RS08625 () 1728535..1728753 - 219 WP_015981528.1 helix-turn-helix domain-containing protein -
CDIF29688_RS08630 () 1728866..1729060 + 195 WP_021367760.1 helix-turn-helix transcriptional regulator -
CDIF29688_RS08635 () 1729102..1729896 + 795 WP_021366332.1 phage regulatory protein/antirepressor Ant -
CDIF29688_RS08640 () 1729953..1730162 + 210 WP_009888812.1 hypothetical protein -
CDIF29688_RS08645 () 1730172..1730546 - 375 WP_003433505.1 hypothetical protein -
CDIF29688_RS08650 () 1730622..1730819 + 198 WP_021366327.1 helix-turn-helix transcriptional regulator -
CDIF29688_RS08655 () 1730850..1731242 + 393 WP_021366345.1 helix-turn-helix domain-containing protein -
CDIF29688_RS20310 () 1731229..1731372 + 144 WP_021390082.1 hypothetical protein -
CDIF29688_RS08660 () 1731539..1731781 + 243 WP_021365380.1 hypothetical protein -
CDIF29688_RS08665 () 1731860..1732141 + 282 WP_021365381.1 hypothetical protein -
CDIF29688_RS08670 () 1732128..1732766 + 639 WP_021365382.1 ERF family protein -
CDIF29688_RS08675 () 1732776..1733672 + 897 WP_021366365.1 DnaD domain protein -
CDIF29688_RS08680 () 1733692..1734111 + 420 WP_021366357.1 single-stranded DNA-binding protein -
CDIF29688_RS08685 () 1734140..1734502 + 363 WP_021366364.1 hypothetical protein -
CDIF29688_RS08695 () 1734736..1735587 + 852 WP_021366349.1 DNA cytosine methyltransferase -
CDIF29688_RS08705 () 1735904..1736101 + 198 WP_021390084.1 hypothetical protein -
CDIF29688_RS08710 () 1736129..1736545 + 417 WP_021362351.1 DUF1064 domain-containing protein -
CDIF29688_RS08715 () 1736564..1737064 + 501 WP_021362352.1 hypothetical protein -
CDIF29688_RS08720 () 1737486..1737692 + 207 WP_021368279.1 hypothetical protein -
CDIF29688_RS08725 () 1738181..1739368 + 1188 WP_021368283.1 hypothetical protein -
CDIF29688_RS08730 () 1739313..1739699 + 387 WP_025782670.1 hypothetical protein -
CDIF29688_RS08735 () 1739704..1740474 + 771 WP_021366361.1 restriction endonuclease -
CDIF29688_RS08740 () 1740532..1741215 + 684 WP_021366358.1 helix-turn-helix domain-containing protein -
CDIF29688_RS08745 () 1741193..1742446 + 1254 WP_021366360.1 PBSX family phage terminase large subunit -
CDIF29688_RS08750 () 1742452..1743891 + 1440 WP_025782671.1 phage portal protein -
CDIF29688_RS08755 () 1743881..1745374 + 1494 WP_021434816.1 minor capsid protein -
CDIF29688_RS08760 () 1745340..1745582 + 243 WP_009901430.1 hypothetical protein -
CDIF29688_RS08765 () 1745653..1745847 + 195 WP_021367053.1 hypothetical protein -
CDIF29688_RS08770 () 1745892..1746455 + 564 WP_021367051.1 phage scaffolding protein -
CDIF29688_RS08775 () 1746467..1747366 + 900 WP_021367050.1 hypothetical protein -
CDIF29688_RS08780 () 1747366..1747599 + 234 WP_009896624.1 hypothetical protein -
CDIF29688_RS08785 () 1747609..1748010 + 402 WP_021390278.1 hypothetical protein -
CDIF29688_RS08790 () 1748004..1748366 + 363 WP_021390090.1 hypothetical protein -
CDIF29688_RS08795 () 1748366..1748791 + 426 WP_021366369.1 HK97 gp10 family phage protein -
CDIF29688_RS08800 () 1748784..1749221 + 438 WP_021366374.1 hypothetical protein -
CDIF29688_RS08805 () 1749214..1749390 + 177 WP_016728451.1 hypothetical protein -
CDIF29688_RS08810 () 1749391..1750701 + 1311 WP_021434813.1 phage tail sheath family protein -
CDIF29688_RS08815 () 1750718..1751188 + 471 WP_003429851.1 phage tail tube protein -
CDIF29688_RS08820 () 1751260..1751700 + 441 WP_003429853.1 phage portal protein -
CDIF29688_RS08830 () 1752041..1752202 + 162 WP_003429855.1 hypothetical protein Toxin Detail
- () 1752122..1752255 - 134 NuclAT_2 - Antitoxin Detail
- () 1752122..1752255 - 134 NuclAT_4 - Antitoxin Detail
- () 1752600..1752648 - 49 NuclAT_11 - -
- () 1752600..1752648 - 49 NuclAT_13 - -
- () 1753755..1753860 - 106 NuclAT_10 - -
- () 1753755..1753860 - 106 NuclAT_12 - -
CDIF29688_RS08835 () 1755139..1755327 + 189 WP_003429858.1 hypothetical protein -
CDIF29688_RS08840 () 1755446..1756315 + 870 WP_021390102.1 hypothetical protein -
CDIF29688_RS20240 () 1756315..1756464 + 150 WP_021367044.1 hypothetical protein -
CDIF29688_RS08845 () 1756594..1757370 + 777 WP_021367042.1 SHOCT domain-containing protein -
CDIF29688_RS08850 () 1757433..1759784 + 2352 WP_021390101.1 tape measure protein -
CDIF29688_RS08855 () 1759801..1760493 + 693 WP_021390100.1 LysM peptidoglycan-binding domain-containing protein -
CDIF29688_RS08860 () 1760486..1762378 + 1893 WP_021426988.1 Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase VF
CDIF29688_RS08865 () 1762392..1762652 + 261 WP_009896648.1 DUF2577 domain-containing protein -
CDIF29688_RS08870 () 1762657..1763076 + 420 WP_021366387.1 DUF2634 domain-containing protein -
CDIF29688_RS08875 () 1763077..1764126 + 1050 WP_025782672.1 baseplate J/gp47 family protein -
CDIF29688_RS08880 () 1764119..1764736 + 618 WP_021373357.1 YmfQ family protein -
CDIF29688_RS08885 () 1764748..1765740 + 993 WP_021377352.1 phage tail protein -
CDIF29688_RS08890 () 1765757..1767067 + 1311 Protein_1620 hypothetical protein -
CDIF29688_RS08895 () 1767490..1767837 + 348 WP_003429875.1 hypothetical protein -
CDIF29688_RS20315 () 1767849..1768019 + 171 WP_021366610.1 hypothetical protein -
CDIF29688_RS08900 () 1768053..1768244 + 192 WP_015984857.1 hypothetical protein -
CDIF29688_RS08905 () 1768258..1768890 + 633 WP_015984858.1 hypothetical protein -
CDIF29688_RS08910 () 1768901..1769104 + 204 WP_021366600.1 hypothetical protein -
CDIF29688_RS08915 () 1769298..1769903 + 606 WP_021390109.1 hypothetical protein -
CDIF29688_RS08920 () 1769927..1770232 + 306 WP_015984860.1 hypothetical protein -
CDIF29688_RS08925 () 1770232..1770414 + 183 WP_015984861.1 hypothetical protein -
CDIF29688_RS08930 () 1770452..1770682 + 231 WP_015981518.1 hemolysin XhlA family protein -
CDIF29688_RS08935 () 1770702..1770959 + 258 WP_009889440.1 phage holin family protein -
CDIF29688_RS08940 () 1771220..1772083 + 864 WP_015984862.1 Abi family protein -
CDIF29688_RS08945 () 1772162..1772974 + 813 WP_009889444.1 N-acetylmuramoyl-L-alanine amidase -
CDIF29688_RS08950 () 1773131..1775422 + 2292 WP_016728850.1 Internalin-J VF
CDIF29688_RS08955 () 1775464..1775649 - 186 WP_003433687.1 hypothetical protein -
CDIF29688_RS20245 () 1776167..1776343 - 177 WP_016728851.1 hypothetical protein -
CDIF29688_RS08960 () 1777060..1777737 + 678 WP_009896673.1 manganese catalase family protein -
CDIF29688_RS08965 () 1777911..1779947 + 2037 WP_021366604.1 thioredoxin domain-containing protein -
CDIF29688_RS08970 () 1780138..1780704 - 567 WP_009889452.1 MarR family transcriptional regulator -
CDIF29688_RS08975 () 1780992..1781927 + 936 WP_021366611.1 alpha/beta hydrolase -
CDIF29688_RS08980 () 1782392..1782520 + 129 Protein_1640 helix-turn-helix transcriptional regulator -
CDIF29688_RS08995 () 1783243..1783788 - 546 WP_021391072.1 AAA family ATPase -
CDIF29688_RS09000 () 1783849..1783998 - 150 Protein_1642 zeta toxin family protein -
CDIF29688_RS09005 () 1784000..1784272 - 273 WP_000301765.1 antitoxin -
CDIF29688_RS09010 () 1784289..1784504 - 216 WP_002321610.1 peptide-binding protein -
CDIF29688_RS09015 () 1784596..1785492 - 897 WP_001809760.1 ParA family protein -
CDIF29688_RS09020 () 1785595..1785879 - 285 WP_073459356.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
CDIF29688_RS09030 () 1786025..1786762 - 738 WP_002292226.1 rRNA adenine N-6-methyltransferase ARG
CDIF29688_RS09035 () 1786809..1787048 - 240 WP_002425012.1 peptide-binding protein -
CDIF29688_RS09040 () 1787168..1789108 - 1941 Protein_1649 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
CDIF29688_RS09045 () 1789235..1789687 - 453 WP_021391067.1 GNAT family N-acetyltransferase -
CDIF29688_RS09050 () 1789713..1790513 - 801 WP_021391066.1 helix-turn-helix domain-containing protein -
CDIF29688_RS09055 () 1790551..1791096 - 546 WP_021391068.1 AAA family ATPase -
CDIF29688_RS09065 () 1791477..1791890 + 414 WP_032548360.1 cysteine-rich VLP domain-containing protein -
CDIF29688_RS09070 () 1792002..1792397 + 396 WP_008666017.1 replication initiator protein A -
CDIF29688_RS09080 () 1792580..1793518 + 939 WP_032548363.1 plasmid recombination protein -
CDIF29688_RS09085 () 1793577..1793774 + 198 WP_032548367.1 hypothetical protein -
CDIF29688_RS09090 () 1793915..1795492 + 1578 WP_074073548.1 IS607 family transposase ISCARN56 Transposase
CDIF29688_RS09095 () 1795551..1796621 + 1071 WP_021422323.1 tetratricopeptide repeat protein -
CDIF29688_RS09100 () 1797040..1797560 - 521 Protein_1659 GNAT family N-acetyltransferase -
CDIF29688_RS09105 () 1797916..1798713 + 798 WP_021366614.1 3D domain-containing protein -
CDIF29688_RS09110 () 1798823..1799413 + 591 WP_021366606.1 SGNH/GDSL hydrolase family protein -
CDIF29688_RS09115 () 1799479..1801176 + 1698 WP_021366608.1 Phosphoglucomutase VF
CDIF29688_RS09120 () 1801390..1802229 + 840 WP_003436555.1 YihY/virulence factor BrkB family protein -
CDIF29688_RS09125 () 1802746..1804602 + 1857 WP_003436553.1 PAS domain-containing protein -
CDIF29688_RS09130 () 1805311..1806528 + 1218 WP_003429993.1 homoserine dehydrogenase -
CDIF29688_RS09135 () 1806645..1807127 + 483 WP_003436550.1 exosporium morphogenetic protein CdeM -
CDIF29688_RS09140 () 1807392..1808657 + 1266 WP_003436547.1 histidinol dehydrogenase -
CDIF29688_RS09145 () 1808860..1809612 - 753 WP_009902635.1 alpha/beta hydrolase -
CDIF29688_RS09150 () 1809730..1809999 - 270 WP_003436543.1 hypothetical protein -
CDIF29688_RS09155 () 1810474..1811568 + 1095 WP_003436542.1 ROK family protein -
CDIF29688_RS09160 () 1811570..1812520 + 951 WP_021362539.1 badF/BadG/BcrA/BcrD ATPase -
CDIF29688_RS09165 () 1812513..1813697 + 1185 WP_021366612.1 hypothetical protein -
CDIF29688_RS09170 () 1813710..1815206 + 1497 WP_021366613.1 sugar ABC transporter ATP-binding protein -
CDIF29688_RS09175 () 1815229..1816179 + 951 WP_021366601.1 ABC transporter permease -
CDIF29688_RS09180 () 1816200..1817162 + 963 WP_003436527.1 sugar ABC transporter substrate-binding protein -
CDIF29688_RS09185 () 1817534..1818166 + 633 WP_003420189.1 YitT family protein -
CDIF29688_RS09190 () 1818577..1818669 + 93 WP_071585680.1 K(+)-transporting ATPase subunit F -
CDIF29688_RS09195 () 1818710..1820392 + 1683 WP_160743615.1 potassium-transporting ATPase subunit KdpA -
CDIF29688_RS09200 () 1820417..1822474 + 2058 WP_003430007.1 potassium-transporting ATPase subunit KdpB -
CDIF29688_RS09205 () 1822493..1823119 + 627 WP_021366616.1 K(+)-transporting ATPase subunit C -
CDIF29688_RS09210 () 1823356..1824264 + 909 WP_021366598.1 cysteine synthase A -
CDIF29688_RS09215 () 1824291..1824881 + 591 WP_009889486.1 serine O-acetyltransferase -
CDIF29688_RS09220 () 1825041..1825229 + 189 WP_003430011.1 ferredoxin -
CDIF29688_RS09225 () 1825283..1826152 - 870 WP_003430012.1 methionyl aminopeptidase -
CDIF29688_RS09230 () 1826349..1827593 - 1245 WP_003436496.1 Pro-Pro endopeptidase VF
CDIF29688_RS09235 () 1827866..1828177 + 312 WP_009889495.1 GIY-YIG nuclease family protein -
CDIF29688_RS09240 () 1828462..1829256 + 795 WP_003436492.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
CDIF29688_RS09245 () 1829280..1830068 + 789 WP_016728861.1 hydroxyethylthiazole kinase -
CDIF29688_RS09250 () 1830091..1830723 + 633 WP_003436488.1 thiamine phosphate synthase -
CDIF29688_RS09255 () 1830862..1831164 + 303 WP_003436486.1 PTS sugar transporter subunit IIB -
CDIF29688_RS09260 () 1831230..1831979 - 750 WP_009889499.1 ABC transporter permease -
CDIF29688_RS09265 () 1831973..1832935 - 963 WP_009902652.1 ABC transporter ATP-binding protein -
CDIF29688_RS09270 () 1832939..1833397 - 459 WP_009889503.1 GyrI-like domain-containing protein -
CDIF29688_RS09275 () 1833753..1834109 + 357 WP_003436478.1 GntR family transcriptional regulator -
CDIF29688_RS09280 () 1834181..1834897 + 717 WP_009893181.1 ABC transporter ATP-binding protein -
CDIF29688_RS09285 () 1834890..1835714 + 825 WP_009896763.1 ABC transporter permease -
CDIF29688_RS09290 () 1835726..1836925 + 1200 WP_021366599.1 hypothetical protein -
CDIF29688_RS09295 () 1836934..1837746 + 813 WP_021365435.1 ABC-2 transporter family protein -
CDIF29688_RS09300 () 1837757..1839025 + 1269 WP_016728866.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance