MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 140929 bp
Accession: NZ_CP019858 Location: 1693357..1834285 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Accession: NZ_CP019858 Location: 1693357..1834285 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CDIF29688_RS08425 () | 1689150..1690544 | + | 1395 | WP_021366576.1 | NADPH-dependent glutamate synthase | - |
CDIF29688_RS08430 () | 1690910..1693129 | + | 2220 | WP_021366594.1 | EAL domain-containing protein | - |
CDIF29688_RS08435 () | 1693276..1694022 | + | 747 | WP_021390148.1 | ABC transporter ATP-binding protein | - |
CDIF29688_RS08440 () | 1694022..1695902 | + | 1881 | WP_021390149.1 | ABC transporter permease | - |
CDIF29688_RS08445 () | 1696021..1697412 | + | 1392 | WP_003436703.1 | MATE family efflux transporter | - |
CDIF29688_RS08450 () | 1697519..1698559 | + | 1041 | WP_021366578.1 | Fic family protein | - |
CDIF29688_RS08455 () | 1699048..1699701 | + | 654 | WP_021366597.1 | NAD(P)H-dependent oxidoreductase | - |
CDIF29688_RS08460 () | 1699777..1699986 | + | 210 | WP_003429769.1 | hypothetical protein | - |
CDIF29688_RS08465 () | 1700126..1700692 | - | 567 | WP_021366585.1 | DUF1836 domain-containing protein | - |
CDIF29688_RS08470 () | 1700853..1701506 | + | 654 | WP_003436685.1 | hypothetical protein | VF |
CDIF29688_RS08475 () | 1701664..1701840 | - | 177 | WP_003420092.1 | hypothetical protein | - |
CDIF29688_RS08480 () | 1702368..1703312 | + | 945 | WP_021390150.1 | ATP phosphoribosyltransferase regulatory subunit | - |
CDIF29688_RS08485 () | 1703334..1703960 | + | 627 | WP_003436683.1 | ATP phosphoribosyltransferase | - |
CDIF29688_RS08490 () | 1703994..1705043 | + | 1050 | WP_021366580.1 | Histidinol-phosphate aminotransferase | VF |
CDIF29688_RS08495 () | 1705046..1705624 | + | 579 | WP_003436680.1 | imidazoleglycerol-phosphate dehydratase HisB | - |
CDIF29688_RS08500 () | 1705626..1706231 | + | 606 | WP_003436678.1 | imidazole glycerol phosphate synthase subunit HisH | - |
CDIF29688_RS08505 () | 1706228..1706950 | + | 723 | WP_003436675.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
CDIF29688_RS08510 () | 1706932..1707690 | + | 759 | WP_003436672.1 | imidazole glycerol phosphate synthase subunit HisF | - |
CDIF29688_RS08515 () | 1707718..1708386 | + | 669 | WP_003436669.1 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE | - |
CDIF29688_RS08520 () | 1709188..1710516 | + | 1329 | WP_011861250.1 | amino acid permease | - |
CDIF29688_RS08525 () | 1711269..1712102 | + | 834 | WP_009902571.1 | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC | VF |
CDIF29688_RS08530 () | 1712195..1713127 | + | 933 | WP_169460749.1 | peptidylprolyl isomerase | - |
CDIF29688_RS08535 () | 1713179..1713661 | + | 483 | WP_003436663.1 | sigma-70 family RNA polymerase sigma factor | - |
CDIF29688_RS08540 () | 1713673..1714542 | + | 870 | WP_003436661.1 | anti-sigma-V factor rsiV | - |
CDIF29688_RS08545 () | 1714585..1715340 | + | 756 | WP_021366596.1 | DUF3298 and DUF4163 domain-containing protein | - |
CDIF29688_RS08550 () | 1715382..1716203 | + | 822 | WP_009902575.1 | xanthine dehydrogenase accessory factor | - |
CDIF29688_RS08555 () | 1716208..1716969 | + | 762 | WP_021366588.1 | M48 family metallopeptidase | - |
CDIF29688_RS08560 () | 1717500..1717739 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
CDIF29688_RS08565 () | 1718043..1719038 | + | 996 | WP_074033748.1 | ketol-acid reductoisomerase | - |
CDIF29688_RS08570 () | 1719091..1720779 | + | 1689 | WP_021366589.1 | biosynthetic-type acetolactate synthase large subunit | - |
CDIF29688_RS08575 () | 1721138..1722268 | - | 1131 | WP_118661336.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
CDIF29688_RS08580 () | 1722508..1723014 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
CDIF29688_RS08585 () | 1723277..1724866 | - | 1590 | WP_003429805.1 | SIR2 family protein | - |
CDIF29688_RS08590 () | 1724890..1725453 | - | 564 | WP_003429806.1 | XRE family transcriptional regulator | - |
CDIF29688_RS08595 () | 1725606..1725827 | + | 222 | WP_003429807.1 | ISNCY family transposase ISH7A | Transposase |
CDIF29688_RS08600 () | 1725830..1726645 | + | 816 | WP_021366595.1 | phage regulatory protein/antirepressor Ant | - |
CDIF29688_RS08605 () | 1726824..1727003 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
CDIF29688_RS08610 () | 1727139..1727318 | + | 180 | WP_003429812.1 | hypothetical protein | - |
CDIF29688_RS08615 () | 1727311..1728102 | + | 792 | WP_021367758.1 | ORF6N domain-containing protein | - |
CDIF29688_RS08620 () | 1728185..1728379 | - | 195 | WP_021368281.1 | hypothetical protein | - |
CDIF29688_RS08625 () | 1728535..1728753 | - | 219 | WP_015981528.1 | helix-turn-helix domain-containing protein | - |
CDIF29688_RS08630 () | 1728866..1729060 | + | 195 | WP_021367760.1 | helix-turn-helix transcriptional regulator | - |
CDIF29688_RS08635 () | 1729102..1729896 | + | 795 | WP_021366332.1 | phage regulatory protein/antirepressor Ant | - |
CDIF29688_RS08640 () | 1729953..1730162 | + | 210 | WP_009888812.1 | hypothetical protein | - |
CDIF29688_RS08645 () | 1730172..1730546 | - | 375 | WP_003433505.1 | hypothetical protein | - |
CDIF29688_RS08650 () | 1730622..1730819 | + | 198 | WP_021366327.1 | helix-turn-helix transcriptional regulator | - |
CDIF29688_RS08655 () | 1730850..1731242 | + | 393 | WP_021366345.1 | helix-turn-helix domain-containing protein | - |
CDIF29688_RS20310 () | 1731229..1731372 | + | 144 | WP_021390082.1 | hypothetical protein | - |
CDIF29688_RS08660 () | 1731539..1731781 | + | 243 | WP_021365380.1 | hypothetical protein | - |
CDIF29688_RS08665 () | 1731860..1732141 | + | 282 | WP_021365381.1 | hypothetical protein | - |
CDIF29688_RS08670 () | 1732128..1732766 | + | 639 | WP_021365382.1 | ERF family protein | - |
CDIF29688_RS08675 () | 1732776..1733672 | + | 897 | WP_021366365.1 | DnaD domain protein | - |
CDIF29688_RS08680 () | 1733692..1734111 | + | 420 | WP_021366357.1 | single-stranded DNA-binding protein | - |
CDIF29688_RS08685 () | 1734140..1734502 | + | 363 | WP_021366364.1 | hypothetical protein | - |
CDIF29688_RS08695 () | 1734736..1735587 | + | 852 | WP_021366349.1 | DNA cytosine methyltransferase | - |
CDIF29688_RS08705 () | 1735904..1736101 | + | 198 | WP_021390084.1 | hypothetical protein | - |
CDIF29688_RS08710 () | 1736129..1736545 | + | 417 | WP_021362351.1 | DUF1064 domain-containing protein | - |
CDIF29688_RS08715 () | 1736564..1737064 | + | 501 | WP_021362352.1 | hypothetical protein | - |
CDIF29688_RS08720 () | 1737486..1737692 | + | 207 | WP_021368279.1 | hypothetical protein | - |
CDIF29688_RS08725 () | 1738181..1739368 | + | 1188 | WP_021368283.1 | hypothetical protein | - |
CDIF29688_RS08730 () | 1739313..1739699 | + | 387 | WP_025782670.1 | hypothetical protein | - |
CDIF29688_RS08735 () | 1739704..1740474 | + | 771 | WP_021366361.1 | restriction endonuclease | - |
CDIF29688_RS08740 () | 1740532..1741215 | + | 684 | WP_021366358.1 | helix-turn-helix domain-containing protein | - |
CDIF29688_RS08745 () | 1741193..1742446 | + | 1254 | WP_021366360.1 | PBSX family phage terminase large subunit | - |
CDIF29688_RS08750 () | 1742452..1743891 | + | 1440 | WP_025782671.1 | phage portal protein | - |
CDIF29688_RS08755 () | 1743881..1745374 | + | 1494 | WP_021434816.1 | minor capsid protein | - |
CDIF29688_RS08760 () | 1745340..1745582 | + | 243 | WP_009901430.1 | hypothetical protein | - |
CDIF29688_RS08765 () | 1745653..1745847 | + | 195 | WP_021367053.1 | hypothetical protein | - |
CDIF29688_RS08770 () | 1745892..1746455 | + | 564 | WP_021367051.1 | phage scaffolding protein | - |
CDIF29688_RS08775 () | 1746467..1747366 | + | 900 | WP_021367050.1 | hypothetical protein | - |
CDIF29688_RS08780 () | 1747366..1747599 | + | 234 | WP_009896624.1 | hypothetical protein | - |
CDIF29688_RS08785 () | 1747609..1748010 | + | 402 | WP_021390278.1 | hypothetical protein | - |
CDIF29688_RS08790 () | 1748004..1748366 | + | 363 | WP_021390090.1 | hypothetical protein | - |
CDIF29688_RS08795 () | 1748366..1748791 | + | 426 | WP_021366369.1 | HK97 gp10 family phage protein | - |
CDIF29688_RS08800 () | 1748784..1749221 | + | 438 | WP_021366374.1 | hypothetical protein | - |
CDIF29688_RS08805 () | 1749214..1749390 | + | 177 | WP_016728451.1 | hypothetical protein | - |
CDIF29688_RS08810 () | 1749391..1750701 | + | 1311 | WP_021434813.1 | phage tail sheath family protein | - |
CDIF29688_RS08815 () | 1750718..1751188 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
CDIF29688_RS08820 () | 1751260..1751700 | + | 441 | WP_003429853.1 | phage portal protein | - |
CDIF29688_RS08830 () | 1752041..1752202 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
- () | 1752122..1752255 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
- () | 1752122..1752255 | - | 134 | NuclAT_4 | - | Antitoxin Detail |
- () | 1752600..1752648 | - | 49 | NuclAT_11 | - | - |
- () | 1752600..1752648 | - | 49 | NuclAT_13 | - | - |
- () | 1753755..1753860 | - | 106 | NuclAT_10 | - | - |
- () | 1753755..1753860 | - | 106 | NuclAT_12 | - | - |
CDIF29688_RS08835 () | 1755139..1755327 | + | 189 | WP_003429858.1 | hypothetical protein | - |
CDIF29688_RS08840 () | 1755446..1756315 | + | 870 | WP_021390102.1 | hypothetical protein | - |
CDIF29688_RS20240 () | 1756315..1756464 | + | 150 | WP_021367044.1 | hypothetical protein | - |
CDIF29688_RS08845 () | 1756594..1757370 | + | 777 | WP_021367042.1 | SHOCT domain-containing protein | - |
CDIF29688_RS08850 () | 1757433..1759784 | + | 2352 | WP_021390101.1 | tape measure protein | - |
CDIF29688_RS08855 () | 1759801..1760493 | + | 693 | WP_021390100.1 | LysM peptidoglycan-binding domain-containing protein | - |
CDIF29688_RS08860 () | 1760486..1762378 | + | 1893 | WP_021426988.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
CDIF29688_RS08865 () | 1762392..1762652 | + | 261 | WP_009896648.1 | DUF2577 domain-containing protein | - |
CDIF29688_RS08870 () | 1762657..1763076 | + | 420 | WP_021366387.1 | DUF2634 domain-containing protein | - |
CDIF29688_RS08875 () | 1763077..1764126 | + | 1050 | WP_025782672.1 | baseplate J/gp47 family protein | - |
CDIF29688_RS08880 () | 1764119..1764736 | + | 618 | WP_021373357.1 | YmfQ family protein | - |
CDIF29688_RS08885 () | 1764748..1765740 | + | 993 | WP_021377352.1 | phage tail protein | - |
CDIF29688_RS08890 () | 1765757..1767067 | + | 1311 | Protein_1620 | hypothetical protein | - |
CDIF29688_RS08895 () | 1767490..1767837 | + | 348 | WP_003429875.1 | hypothetical protein | - |
CDIF29688_RS20315 () | 1767849..1768019 | + | 171 | WP_021366610.1 | hypothetical protein | - |
CDIF29688_RS08900 () | 1768053..1768244 | + | 192 | WP_015984857.1 | hypothetical protein | - |
CDIF29688_RS08905 () | 1768258..1768890 | + | 633 | WP_015984858.1 | hypothetical protein | - |
CDIF29688_RS08910 () | 1768901..1769104 | + | 204 | WP_021366600.1 | hypothetical protein | - |
CDIF29688_RS08915 () | 1769298..1769903 | + | 606 | WP_021390109.1 | hypothetical protein | - |
CDIF29688_RS08920 () | 1769927..1770232 | + | 306 | WP_015984860.1 | hypothetical protein | - |
CDIF29688_RS08925 () | 1770232..1770414 | + | 183 | WP_015984861.1 | hypothetical protein | - |
CDIF29688_RS08930 () | 1770452..1770682 | + | 231 | WP_015981518.1 | hemolysin XhlA family protein | - |
CDIF29688_RS08935 () | 1770702..1770959 | + | 258 | WP_009889440.1 | phage holin family protein | - |
CDIF29688_RS08940 () | 1771220..1772083 | + | 864 | WP_015984862.1 | Abi family protein | - |
CDIF29688_RS08945 () | 1772162..1772974 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
CDIF29688_RS08950 () | 1773131..1775422 | + | 2292 | WP_016728850.1 | Internalin-J | VF |
CDIF29688_RS08955 () | 1775464..1775649 | - | 186 | WP_003433687.1 | hypothetical protein | - |
CDIF29688_RS20245 () | 1776167..1776343 | - | 177 | WP_016728851.1 | hypothetical protein | - |
CDIF29688_RS08960 () | 1777060..1777737 | + | 678 | WP_009896673.1 | manganese catalase family protein | - |
CDIF29688_RS08965 () | 1777911..1779947 | + | 2037 | WP_021366604.1 | thioredoxin domain-containing protein | - |
CDIF29688_RS08970 () | 1780138..1780704 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
CDIF29688_RS08975 () | 1780992..1781927 | + | 936 | WP_021366611.1 | alpha/beta hydrolase | - |
CDIF29688_RS08980 () | 1782392..1782520 | + | 129 | Protein_1640 | helix-turn-helix transcriptional regulator | - |
CDIF29688_RS08995 () | 1783243..1783788 | - | 546 | WP_021391072.1 | AAA family ATPase | - |
CDIF29688_RS09000 () | 1783849..1783998 | - | 150 | Protein_1642 | zeta toxin family protein | - |
CDIF29688_RS09005 () | 1784000..1784272 | - | 273 | WP_000301765.1 | antitoxin | - |
CDIF29688_RS09010 () | 1784289..1784504 | - | 216 | WP_002321610.1 | peptide-binding protein | - |
CDIF29688_RS09015 () | 1784596..1785492 | - | 897 | WP_001809760.1 | ParA family protein | - |
CDIF29688_RS09020 () | 1785595..1785879 | - | 285 | WP_073459356.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
CDIF29688_RS09030 () | 1786025..1786762 | - | 738 | WP_002292226.1 | rRNA adenine N-6-methyltransferase | ARG |
CDIF29688_RS09035 () | 1786809..1787048 | - | 240 | WP_002425012.1 | peptide-binding protein | - |
CDIF29688_RS09040 () | 1787168..1789108 | - | 1941 | Protein_1649 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
CDIF29688_RS09045 () | 1789235..1789687 | - | 453 | WP_021391067.1 | GNAT family N-acetyltransferase | - |
CDIF29688_RS09050 () | 1789713..1790513 | - | 801 | WP_021391066.1 | helix-turn-helix domain-containing protein | - |
CDIF29688_RS09055 () | 1790551..1791096 | - | 546 | WP_021391068.1 | AAA family ATPase | - |
CDIF29688_RS09065 () | 1791477..1791890 | + | 414 | WP_032548360.1 | cysteine-rich VLP domain-containing protein | - |
CDIF29688_RS09070 () | 1792002..1792397 | + | 396 | WP_008666017.1 | replication initiator protein A | - |
CDIF29688_RS09080 () | 1792580..1793518 | + | 939 | WP_032548363.1 | plasmid recombination protein | - |
CDIF29688_RS09085 () | 1793577..1793774 | + | 198 | WP_032548367.1 | hypothetical protein | - |
CDIF29688_RS09090 () | 1793915..1795492 | + | 1578 | WP_074073548.1 | IS607 family transposase ISCARN56 | Transposase |
CDIF29688_RS09095 () | 1795551..1796621 | + | 1071 | WP_021422323.1 | tetratricopeptide repeat protein | - |
CDIF29688_RS09100 () | 1797040..1797560 | - | 521 | Protein_1659 | GNAT family N-acetyltransferase | - |
CDIF29688_RS09105 () | 1797916..1798713 | + | 798 | WP_021366614.1 | 3D domain-containing protein | - |
CDIF29688_RS09110 () | 1798823..1799413 | + | 591 | WP_021366606.1 | SGNH/GDSL hydrolase family protein | - |
CDIF29688_RS09115 () | 1799479..1801176 | + | 1698 | WP_021366608.1 | Phosphoglucomutase | VF |
CDIF29688_RS09120 () | 1801390..1802229 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
CDIF29688_RS09125 () | 1802746..1804602 | + | 1857 | WP_003436553.1 | PAS domain-containing protein | - |
CDIF29688_RS09130 () | 1805311..1806528 | + | 1218 | WP_003429993.1 | homoserine dehydrogenase | - |
CDIF29688_RS09135 () | 1806645..1807127 | + | 483 | WP_003436550.1 | exosporium morphogenetic protein CdeM | - |
CDIF29688_RS09140 () | 1807392..1808657 | + | 1266 | WP_003436547.1 | histidinol dehydrogenase | - |
CDIF29688_RS09145 () | 1808860..1809612 | - | 753 | WP_009902635.1 | alpha/beta hydrolase | - |
CDIF29688_RS09150 () | 1809730..1809999 | - | 270 | WP_003436543.1 | hypothetical protein | - |
CDIF29688_RS09155 () | 1810474..1811568 | + | 1095 | WP_003436542.1 | ROK family protein | - |
CDIF29688_RS09160 () | 1811570..1812520 | + | 951 | WP_021362539.1 | badF/BadG/BcrA/BcrD ATPase | - |
CDIF29688_RS09165 () | 1812513..1813697 | + | 1185 | WP_021366612.1 | hypothetical protein | - |
CDIF29688_RS09170 () | 1813710..1815206 | + | 1497 | WP_021366613.1 | sugar ABC transporter ATP-binding protein | - |
CDIF29688_RS09175 () | 1815229..1816179 | + | 951 | WP_021366601.1 | ABC transporter permease | - |
CDIF29688_RS09180 () | 1816200..1817162 | + | 963 | WP_003436527.1 | sugar ABC transporter substrate-binding protein | - |
CDIF29688_RS09185 () | 1817534..1818166 | + | 633 | WP_003420189.1 | YitT family protein | - |
CDIF29688_RS09190 () | 1818577..1818669 | + | 93 | WP_071585680.1 | K(+)-transporting ATPase subunit F | - |
CDIF29688_RS09195 () | 1818710..1820392 | + | 1683 | WP_160743615.1 | potassium-transporting ATPase subunit KdpA | - |
CDIF29688_RS09200 () | 1820417..1822474 | + | 2058 | WP_003430007.1 | potassium-transporting ATPase subunit KdpB | - |
CDIF29688_RS09205 () | 1822493..1823119 | + | 627 | WP_021366616.1 | K(+)-transporting ATPase subunit C | - |
CDIF29688_RS09210 () | 1823356..1824264 | + | 909 | WP_021366598.1 | cysteine synthase A | - |
CDIF29688_RS09215 () | 1824291..1824881 | + | 591 | WP_009889486.1 | serine O-acetyltransferase | - |
CDIF29688_RS09220 () | 1825041..1825229 | + | 189 | WP_003430011.1 | ferredoxin | - |
CDIF29688_RS09225 () | 1825283..1826152 | - | 870 | WP_003430012.1 | methionyl aminopeptidase | - |
CDIF29688_RS09230 () | 1826349..1827593 | - | 1245 | WP_003436496.1 | Pro-Pro endopeptidase | VF |
CDIF29688_RS09235 () | 1827866..1828177 | + | 312 | WP_009889495.1 | GIY-YIG nuclease family protein | - |
CDIF29688_RS09240 () | 1828462..1829256 | + | 795 | WP_003436492.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
CDIF29688_RS09245 () | 1829280..1830068 | + | 789 | WP_016728861.1 | hydroxyethylthiazole kinase | - |
CDIF29688_RS09250 () | 1830091..1830723 | + | 633 | WP_003436488.1 | thiamine phosphate synthase | - |
CDIF29688_RS09255 () | 1830862..1831164 | + | 303 | WP_003436486.1 | PTS sugar transporter subunit IIB | - |
CDIF29688_RS09260 () | 1831230..1831979 | - | 750 | WP_009889499.1 | ABC transporter permease | - |
CDIF29688_RS09265 () | 1831973..1832935 | - | 963 | WP_009902652.1 | ABC transporter ATP-binding protein | - |
CDIF29688_RS09270 () | 1832939..1833397 | - | 459 | WP_009889503.1 | GyrI-like domain-containing protein | - |
CDIF29688_RS09275 () | 1833753..1834109 | + | 357 | WP_003436478.1 | GntR family transcriptional regulator | - |
CDIF29688_RS09280 () | 1834181..1834897 | + | 717 | WP_009893181.1 | ABC transporter ATP-binding protein | - |
CDIF29688_RS09285 () | 1834890..1835714 | + | 825 | WP_009896763.1 | ABC transporter permease | - |
CDIF29688_RS09290 () | 1835726..1836925 | + | 1200 | WP_021366599.1 | hypothetical protein | - |
CDIF29688_RS09295 () | 1836934..1837746 | + | 813 | WP_021365435.1 | ABC-2 transporter family protein | - |
CDIF29688_RS09300 () | 1837757..1839025 | + | 1269 | WP_016728866.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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