MGE detailed information
MGE type: Prophage MGE length: 64013 bp
Accession: NZ_CP029566 Location: 855128..919140 Organism: Clostridioides difficile strain CBA7204 Replicon: chromosome
Accession: NZ_CP029566 Location: 855128..919140 Organism: Clostridioides difficile strain CBA7204 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF008_RS03910 () | 850196..850957 | + | 762 | WP_159376176.1 | M48 family metallopeptidase | - |
| DF008_RS03915 () | 851488..851727 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| DF008_RS03920 () | 852031..853026 | + | 996 | WP_071605616.1 | ketol-acid reductoisomerase | - |
| DF008_RS03925 () | 853079..854767 | + | 1689 | WP_021361855.1 | biosynthetic-type acetolactate synthase large subunit | - |
| DF008_RS03930 () | 855128..856258 | - | 1131 | WP_159376177.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| DF008_RS03935 () | 856498..857004 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DF008_RS03940 () | 857080..857421 | - | 342 | WP_074145210.1 | XRE family transcriptional regulator | - |
| DF008_RS03945 () | 858408..858563 | + | 156 | WP_158068985.1 | hypothetical protein | - |
| DF008_RS03950 () | 858584..858955 | - | 372 | WP_074145209.1 | helix-turn-helix domain-containing protein | - |
| DF008_RS03955 () | 859096..859281 | + | 186 | WP_074145208.1 | hypothetical protein | - |
| DF008_RS03960 () | 859401..860153 | + | 753 | WP_074145207.1 | toxin Bro | - |
| DF008_RS03965 () | 860549..860803 | + | 255 | WP_124962501.1 | hypothetical protein | - |
| DF008_RS03970 () | 860854..861246 | + | 393 | WP_159376178.1 | helix-turn-helix domain-containing protein | - |
| DF008_RS18535 () | 861233..861376 | + | 144 | WP_165477232.1 | hypothetical protein | - |
| DF008_RS03975 () | 861543..861785 | + | 243 | WP_021365380.1 | hypothetical protein | - |
| DF008_RS03980 () | 861864..862145 | + | 282 | WP_021365381.1 | hypothetical protein | - |
| DF008_RS03985 () | 862132..862770 | + | 639 | WP_022621575.1 | ERF family protein | - |
| DF008_RS03990 () | 862789..863679 | + | 891 | WP_159376179.1 | DnaD domain protein | - |
| DF008_RS03995 () | 863699..864118 | + | 420 | WP_021408093.1 | single-stranded DNA-binding protein | - |
| DF008_RS04000 () | 864148..864510 | + | 363 | WP_159376180.1 | hypothetical protein | - |
| DF008_RS18540 () | 864746..864922 | + | 177 | WP_021401460.1 | hypothetical protein | - |
| DF008_RS04010 () | 865032..865271 | + | 240 | WP_074099257.1 | hypothetical protein | - |
| DF008_RS04020 () | 865386..865793 | + | 408 | WP_159376182.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DF008_RS04025 () | 865895..866743 | + | 849 | WP_159376183.1 | ORF6C domain-containing protein | - |
| DF008_RS04030 () | 866843..867349 | + | 507 | WP_107601703.1 | hypothetical protein | - |
| DF008_RS04035 () | 867706..868353 | + | 648 | WP_074436194.1 | hypothetical protein | - |
| DF008_RS04040 () | 868385..869527 | + | 1143 | WP_074090144.1 | XRE family transcriptional regulator | - |
| DF008_RS04045 () | 870002..871042 | + | 1041 | WP_021422296.1 | hypothetical protein | - |
| DF008_RS04050 () | 871067..872503 | + | 1437 | WP_021422308.1 | hypothetical protein | - |
| DF008_RS04055 () | 872615..873274 | + | 660 | WP_021423925.1 | hypothetical protein | - |
| DF008_RS04060 () | 873333..874016 | + | 684 | WP_021422306.1 | helix-turn-helix domain-containing protein | - |
| DF008_RS04065 () | 873994..875247 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| DF008_RS04070 () | 875253..876692 | + | 1440 | WP_003429837.1 | phage portal protein | - |
| DF008_RS04075 () | 876682..878079 | + | 1398 | WP_021363489.1 | minor capsid protein | - |
| DF008_RS04080 () | 878094..878294 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| DF008_RS04085 () | 878360..878923 | + | 564 | WP_074081543.1 | phage scaffolding protein | - |
| DF008_RS04090 () | 878935..879834 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| DF008_RS04095 () | 879834..880067 | + | 234 | WP_021363492.1 | hypothetical protein | - |
| DF008_RS04100 () | 880077..880478 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| DF008_RS04105 () | 880472..880819 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| DF008_RS04110 () | 880819..881109 | + | 291 | WP_021358995.1 | HK97 gp10 family phage protein | - |
| DF008_RS04115 () | 881219..882025 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| DF008_RS04125 () | 882374..882811 | + | 438 | WP_009901504.1 | hypothetical protein | - |
| DF008_RS04130 () | 882804..882980 | + | 177 | WP_016728451.1 | hypothetical protein | - |
| DF008_RS04135 () | 882981..884291 | + | 1311 | WP_021363494.1 | phage tail sheath family protein | - |
| DF008_RS04140 () | 884308..884778 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| DF008_RS04145 () | 884850..885290 | + | 441 | WP_003429853.1 | phage portal protein | - |
| DF008_RS04155 () | 885631..885792 | + | 162 | WP_032508407.1 | hypothetical protein | Toxin Detail |
| - () | 885712..885845 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 885712..885845 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
| - () | 886190..886295 | - | 106 | NuclAT_4 | - | - |
| - () | 886190..886295 | - | 106 | NuclAT_5 | - | - |
| DF008_RS04160 () | 887727..887897 | + | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| DF008_RS04165 () | 888025..888867 | + | 843 | WP_021367639.1 | BRO family, N-terminal domain protein | - |
| DF008_RS18545 () | 888922..889077 | + | 156 | WP_021367640.1 | hypothetical protein | - |
| DF008_RS04170 () | 889634..890404 | + | 771 | WP_018112719.1 | SHOCT domain-containing protein | - |
| DF008_RS04175 () | 890462..892813 | + | 2352 | WP_021395825.1 | tape measure protein | - |
| DF008_RS04180 () | 892830..893525 | + | 696 | WP_021395826.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DF008_RS04185 () | 893518..895410 | + | 1893 | WP_021395827.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| DF008_RS04190 () | 895424..895684 | + | 261 | WP_009896648.1 | DUF2577 domain-containing protein | - |
| DF008_RS04195 () | 895689..896108 | + | 420 | WP_021395828.1 | DUF2634 domain-containing protein | - |
| DF008_RS04200 () | 896109..897158 | + | 1050 | WP_016728467.1 | baseplate J/gp47 family protein | - |
| DF008_RS04205 () | 897151..897768 | + | 618 | WP_021395829.1 | YmfQ family protein | - |
| DF008_RS04210 () | 897780..898805 | + | 1026 | WP_021395830.1 | phage tail protein | - |
| DF008_RS04215 () | 898822..900363 | + | 1542 | WP_021395831.1 | hypothetical protein | - |
| DF008_RS04220 () | 900377..900670 | + | 294 | WP_021360357.1 | hypothetical protein | - |
| DF008_RS04225 () | 900670..900852 | + | 183 | WP_021361398.1 | hypothetical protein | - |
| DF008_RS04230 () | 900886..901077 | + | 192 | WP_021395832.1 | hypothetical protein | - |
| DF008_RS04235 () | 901091..901723 | + | 633 | WP_009901453.1 | hypothetical protein | - |
| DF008_RS04240 () | 901734..901937 | + | 204 | WP_009901455.1 | hypothetical protein | - |
| DF008_RS04245 () | 902132..902737 | + | 606 | WP_159376184.1 | hypothetical protein | - |
| DF008_RS04250 () | 902761..903066 | + | 306 | WP_074077882.1 | hypothetical protein | - |
| DF008_RS04255 () | 903066..903248 | + | 183 | WP_016728848.1 | hypothetical protein | - |
| DF008_RS04260 () | 903282..903845 | + | 564 | WP_016728849.1 | hypothetical protein | - |
| DF008_RS04265 () | 903897..904127 | + | 231 | WP_015981518.1 | hemolysin XhlA family protein | - |
| DF008_RS04270 () | 904147..904404 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| DF008_RS04275 () | 904665..905528 | + | 864 | WP_015984862.1 | Abi family protein | - |
| DF008_RS04280 () | 905607..906419 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DF008_RS04285 () | 906576..908867 | + | 2292 | WP_016728850.1 | Internalin-J | VF |
| DF008_RS04290 () | 908909..909094 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| DF008_RS04295 () | 909612..909788 | - | 177 | WP_016728851.1 | hypothetical protein | - |
| DF008_RS04300 () | 910505..911182 | + | 678 | WP_003436641.1 | manganese catalase family protein | - |
| DF008_RS04305 () | 911351..913387 | + | 2037 | WP_074140251.1 | thioredoxin domain-containing protein | - |
| DF008_RS04310 () | 913578..914144 | - | 567 | WP_003436635.1 | MarR family transcriptional regulator | - |
| DF008_RS04315 () | 914432..915367 | + | 936 | WP_021366611.1 | alpha/beta hydrolase | - |
| DF008_RS04320 () | 915832..917046 | + | 1215 | WP_021360538.1 | ISNCY family transposase ISH7A | Transposase |
| DF008_RS04325 () | 917466..917987 | - | 522 | WP_016728855.1 | GNAT family N-acetyltransferase | - |
| DF008_RS04330 () | 918343..919140 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| DF008_RS04335 () | 919250..919840 | + | 591 | WP_003436558.1 | SGNH/GDSL hydrolase family protein | - |
| DF008_RS04340 () | 919906..921603 | + | 1698 | WP_159376185.1 | phospho-sugar mutase | - |
| DF008_RS04345 () | 921817..922656 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|