MGE detailed information
MGE type: Prophage MGE length: 75519 bp
Accession: NZ_CP012323 Location: 1678945..1754463 Organism: Clostridioides difficile strain DSM 28669 Replicon: chromosome
Accession: NZ_CP012323 Location: 1678945..1754463 Organism: Clostridioides difficile strain DSM 28669 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28669_RS08055 () | 1674016..1674777 | + | 762 | WP_070113270.1 | M48 family metallopeptidase | - |
| CDIF28669_RS08060 () | 1675308..1675547 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF28669_RS08065 () | 1675851..1676846 | + | 996 | WP_074048058.1 | ketol-acid reductoisomerase | - |
| CDIF28669_RS08070 () | 1676899..1678587 | + | 1689 | WP_070113266.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF28669_RS08075 () | 1678945..1680075 | - | 1131 | WP_070113264.1 | hypothetical protein ; Integrase | Integrase |
| CDIF28669_RS08080 () | 1680314..1680820 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28669_RS08085 () | 1680896..1681444 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDIF28669_RS19790 () | 1681456..1681746 | - | 291 | WP_199855622.1 | helix-turn-helix domain-containing protein | - |
| CDIF28669_RS19795 () | 1681840..1682067 | - | 228 | Protein_1467 | helix-turn-helix transcriptional regulator | - |
| CDIF28669_RS08095 () | 1682210..1682443 | + | 234 | WP_021396857.1 | hypothetical protein | VF |
| CDIF28669_RS08100 () | 1682648..1682827 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| CDIF28669_RS19560 () | 1682904..1683041 | + | 138 | WP_009902579.1 | hypothetical protein | - |
| CDIF28669_RS08105 () | 1683027..1683338 | - | 312 | WP_009902581.1 | hypothetical protein | - |
| CDIF28669_RS19565 () | 1683460..1683630 | + | 171 | WP_009902584.1 | hypothetical protein | - |
| CDIF28669_RS08110 () | 1683633..1684436 | + | 804 | WP_038810633.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF28669_RS08115 () | 1684483..1684692 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF28669_RS08120 () | 1684851..1685048 | + | 198 | WP_070113262.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28669_RS08125 () | 1685079..1685471 | + | 393 | WP_038810634.1 | helix-turn-helix domain-containing protein | - |
| CDIF28669_RS19635 () | 1685458..1685601 | + | 144 | WP_009888817.1 | hypothetical protein | - |
| CDIF28669_RS08130 () | 1685672..1686109 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF28669_RS08135 () | 1686121..1687287 | + | 1167 | WP_038810635.1 | DUF2800 domain-containing protein | - |
| CDIF28669_RS08140 () | 1687303..1687638 | + | 336 | WP_038810636.1 | hypothetical protein | - |
| CDIF28669_RS08145 () | 1687691..1688263 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF28669_RS08150 () | 1688286..1688858 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF28669_RS08155 () | 1688858..1690816 | + | 1959 | WP_070113260.1 | DNA polymerase | - |
| CDIF28669_RS08160 () | 1690828..1693245 | + | 2418 | WP_070113258.1 | virulence-associated E family protein | - |
| CDIF28669_RS08165 () | 1693527..1693853 | + | 327 | WP_003429828.1 | VRR-NUC domain-containing protein | - |
| CDIF28669_RS08170 () | 1693802..1695172 | + | 1371 | Protein_1486 | DEAD/DEAH box helicase | - |
| CDIF28669_RS19640 () | 1695196..1695333 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDIF28669_RS08175 () | 1695326..1695805 | + | 480 | WP_003433526.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF28669_RS08180 () | 1696291..1696527 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDIF28669_RS08185 () | 1696830..1697804 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDIF28669_RS19570 () | 1697825..1698334 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF28669_RS08200 () | 1698405..1699097 | + | 693 | WP_003429835.1 | helix-turn-helix domain-containing protein | - |
| CDIF28669_RS08205 () | 1699075..1700328 | + | 1254 | WP_043897189.1 | PBSX family phage terminase large subunit | - |
| CDIF28669_RS08210 () | 1700334..1701773 | + | 1440 | WP_109298686.1 | phage portal protein | - |
| CDIF28669_RS08215 () | 1701763..1703160 | + | 1398 | WP_109298685.1 | minor capsid protein | - |
| CDIF28669_RS08220 () | 1703175..1703375 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF28669_RS08225 () | 1703441..1704004 | + | 564 | WP_009896620.1 | phage scaffolding protein | - |
| CDIF28669_RS08230 () | 1704016..1704915 | + | 900 | WP_070116963.1 | capsid protein | - |
| CDIF28669_RS08235 () | 1704915..1705148 | + | 234 | WP_070113070.1 | hypothetical protein | - |
| CDIF28669_RS08240 () | 1705158..1705559 | + | 402 | WP_077726212.1 | hypothetical protein | - |
| CDIF28669_RS08245 () | 1705553..1705900 | + | 348 | WP_070113072.1 | hypothetical protein | - |
| CDIF28669_RS08250 () | 1705900..1706325 | + | 426 | WP_038812299.1 | HK97 gp10 family phage protein | - |
| CDIF28669_RS08255 () | 1706318..1706755 | + | 438 | WP_003433544.1 | hypothetical protein | - |
| CDIF28669_RS08260 () | 1706748..1706924 | + | 177 | WP_070112848.1 | hypothetical protein | - |
| CDIF28669_RS08265 () | 1706925..1708235 | + | 1311 | WP_070112850.1 | phage tail sheath family protein | - |
| CDIF28669_RS08270 () | 1708252..1708722 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF28669_RS08275 () | 1708794..1709234 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF28669_RS08285 () | 1709575..1709736 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1709656..1709789 | - | 134 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1709656..1709789 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1710134..1710182 | - | 49 | NuclAT_5 | - | - |
| - () | 1710134..1710182 | - | 49 | NuclAT_7 | - | - |
| - () | 1711096..1711201 | - | 106 | NuclAT_4 | - | - |
| - () | 1711096..1711201 | - | 106 | NuclAT_6 | - | - |
| CDIF28669_RS08290 () | 1712218..1712388 | + | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| CDIF28669_RS08295 () | 1712516..1713358 | + | 843 | WP_074048061.1 | hypothetical protein | - |
| CDIF28669_RS08300 () | 1713411..1713569 | + | 159 | WP_021401161.1 | hypothetical protein | - |
| CDIF28669_RS08305 () | 1714127..1714909 | + | 783 | WP_070112852.1 | SHOCT domain-containing protein | - |
| CDIF28669_RS08310 () | 1714973..1717324 | + | 2352 | WP_070112854.1 | tape measure protein | - |
| CDIF28669_RS08315 () | 1717340..1718035 | + | 696 | WP_070112856.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF28669_RS08320 () | 1718028..1719920 | + | 1893 | WP_021402797.1 | hypothetical protein | VF |
| CDIF28669_RS08325 () | 1719934..1720194 | + | 261 | WP_070112821.1 | DUF2577 domain-containing protein | - |
| CDIF28669_RS08330 () | 1720199..1720618 | + | 420 | WP_070112861.1 | DUF2634 domain-containing protein | - |
| CDIF28669_RS08335 () | 1720619..1721668 | + | 1050 | WP_109298684.1 | baseplate J/gp47 family protein | - |
| CDIF28669_RS08340 () | 1721661..1722278 | + | 618 | WP_070113078.1 | YmfQ family protein | - |
| CDIF28669_RS08345 () | 1722290..1723399 | + | 1110 | WP_074077889.1 | phage tail protein | - |
| CDIF28669_RS08350 () | 1723416..1724561 | + | 1146 | WP_070112010.1 | hypothetical protein | - |
| CDIF28669_RS08355 () | 1724754..1725884 | + | 1131 | WP_077726189.1 | kelch-like protein | - |
| CDIF28669_RS08360 () | 1725902..1726267 | + | 366 | WP_077726188.1 | hypothetical protein | - |
| CDIF28669_RS08365 () | 1726269..1726403 | + | 135 | WP_070112422.1 | XkdX family protein | - |
| CDIF28669_RS08370 () | 1726615..1727226 | + | 612 | WP_070112424.1 | hypothetical protein | - |
| CDIF28669_RS08375 () | 1727238..1727543 | + | 306 | WP_070112426.1 | hypothetical protein | - |
| CDIF28669_RS08380 () | 1727543..1727725 | + | 183 | WP_021396863.1 | hypothetical protein | - |
| CDIF28669_RS08385 () | 1727759..1728322 | + | 564 | WP_070112427.1 | hypothetical protein | - |
| CDIF28669_RS08390 () | 1728374..1728604 | + | 231 | WP_015981518.1 | hemolysin XhlA family protein | - |
| CDIF28669_RS08395 () | 1728620..1728880 | + | 261 | WP_070112429.1 | phage holin family protein | - |
| CDIF28669_RS08400 () | 1728877..1729683 | + | 807 | WP_070112431.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF28669_RS08405 () | 1729728..1729904 | - | 177 | WP_021372034.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CDIF28669_RS19645 () | 1729905..1730072 | - | 168 | WP_021372031.1 | hypothetical protein | - |
| CDIF28669_RS08410 () | 1730601..1730786 | - | 186 | WP_021359196.1 | hypothetical protein | - |
| CDIF28669_RS08415 () | 1731510..1732187 | + | 678 | WP_022617042.1 | manganese catalase family protein | - |
| CDIF28669_RS08420 () | 1732361..1734397 | + | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| CDIF28669_RS08425 () | 1734590..1735156 | - | 567 | WP_003429973.1 | MarR family transcriptional regulator | - |
| CDIF28669_RS08430 () | 1735443..1736381 | + | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| CDIF28669_RS08435 () | 1736762..1737529 | + | 768 | WP_022617043.1 | hypothetical protein | VF |
| CDIF28669_RS08440 () | 1737519..1739648 | + | 2130 | WP_070112433.1 | ABC transporter permease | - |
| CDIF28669_RS08445 () | 1739865..1741079 | + | 1215 | WP_074141360.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF28669_RS08450 () | 1741501..1742022 | - | 522 | WP_070112442.1 | GNAT family N-acetyltransferase | - |
| CDIF28669_RS08455 () | 1742378..1743175 | + | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| CDIF28669_RS08460 () | 1743285..1743875 | + | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF28669_RS08465 () | 1743941..1745638 | + | 1698 | WP_070112444.1 | hypothetical protein | VF |
| CDIF28669_RS08470 () | 1745852..1746691 | + | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
| CDIF28669_RS08475 () | 1747209..1749065 | + | 1857 | WP_022617044.1 | PAS domain-containing protein | - |
| CDIF28669_RS08480 () | 1749773..1750990 | + | 1218 | WP_003429993.1 | homoserine dehydrogenase | - |
| CDIF28669_RS08485 () | 1751107..1751589 | + | 483 | WP_003429994.1 | exosporium morphogenetic protein CdeM | - |
| CDIF28669_RS08490 () | 1751854..1753119 | + | 1266 | WP_003429995.1 | histidinol dehydrogenase | - |
| CDIF28669_RS08495 () | 1753324..1754076 | - | 753 | WP_070112445.1 | alpha/beta hydrolase | - |
| CDIF28669_RS08500 () | 1754194..1754463 | - | 270 | WP_003429998.1 | hypothetical protein | - |
| CDIF28669_RS08505 () | 1754938..1756032 | + | 1095 | WP_070112447.1 | ROK family protein | - |
| CDIF28669_RS08510 () | 1756034..1756984 | + | 951 | WP_070112449.1 | N-acetylglucosamine kinase | - |
| CDIF28669_RS08515 () | 1756977..1758161 | + | 1185 | WP_070112451.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|