MGE detailed information
MGE type: Prophage MGE length: 17758 bp
Accession: NZ_CP016106 Location: 2476834..2494591 Organism: Clostridioides difficile strain DSM 29637 Replicon: chromosome
Accession: NZ_CP016106 Location: 2476834..2494591 Organism: Clostridioides difficile strain DSM 29637 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29637_RS11825 () | 2471835..2472536 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF29637_RS11830 () | 2472529..2472852 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF29637_RS11835 () | 2473058..2475118 | - | 2061 | WP_021401481.1 | sensor histidine kinase | - |
| CDIF29637_RS11845 () | 2475314..2476006 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF29637_RS11850 () | 2476618..2476992 | - | 375 | Protein_2191 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29637_RS11855 () | 2477211..2477444 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF29637_RS11860 () | 2477428..2477841 | + | 414 | WP_021401466.1 | hypothetical protein | - |
| CDIF29637_RS11865 () | 2477860..2478060 | + | 201 | WP_021362723.1 | hypothetical protein | - |
| CDIF29637_RS11870 () | 2478300..2479955 | - | 1656 | WP_021401477.1 | hypothetical protein | - |
| CDIF29637_RS11875 () | 2480421..2480885 | + | 465 | WP_021401486.1 | hypothetical protein | - |
| CDIF29637_RS11885 () | 2481209..2481370 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF29637_RS19310 () | 2481422..2482235 | - | 814 | Protein_2198 | toxin Bro | - |
| CDIF29637_RS19315 () | 2482356..2482508 | - | 153 | WP_021401405.1 | hypothetical protein | - |
| CDIF29637_RS11900 () | 2483389..2484311 | - | 923 | Protein_2200 | SHOCT domain-containing protein | - |
| - () | 2484455..2484584 | + | 130 | NuclAT_2 | - | Antitoxin Detail |
| CDIF29637_RS11905 () | 2484505..2484657 | - | 153 | WP_021425031.1 | hypothetical protein | Toxin Detail |
| CDIF29637_RS11910 () | 2484931..2485254 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF29637_RS11915 () | 2485290..2485544 | - | 255 | WP_118701627.1 | hypothetical protein | - |
| CDIF29637_RS11920 () | 2485852..2486361 | - | 510 | Protein_2204 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF29637_RS11925 () | 2486639..2487013 | - | 375 | Protein_2205 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29637_RS11930 () | 2487118..2487492 | - | 375 | WP_004454597.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29637_RS11935 () | 2488296..2488784 | + | 489 | WP_004454599.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF29637_RS11940 () | 2489173..2489343 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CDIF29637_RS11945 () | 2489820..2490008 | - | 189 | WP_004454605.1 | IS3 family transposase ISEfa10 | Transposase |
| CDIF29637_RS11950 () | 2490170..2490520 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF29637_RS11955 () | 2490522..2490722 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CDIF29637_RS11960 () | 2491045..2491221 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF29637_RS11965 () | 2491446..2491646 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF29637_RS11970 () | 2492281..2493093 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF29637_RS11975 () | 2493103..2493894 | + | 792 | WP_004454610.1 | ABC transporter permease | - |
| CDIF29637_RS11980 () | 2493896..2494591 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| CDIF29637_RS11985 () | 2494578..2495309 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF29637_RS11990 () | 2495623..2496423 | + | 801 | WP_021387191.1 | PIG-L family deacetylase | - |
| CDIF29637_RS11995 () | 2496963..2497679 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CDIF29637_RS12000 () | 2497648..2499237 | + | 1590 | WP_021395704.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|