MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP012320 Location: 1683042..1749479 Organism: Clostridioides difficile strain DSM 28196 Replicon: chromosome
Accession: NZ_CP012320 Location: 1683042..1749479 Organism: Clostridioides difficile strain DSM 28196 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28196_RS08090 () | 1678147..1678908 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CDIF28196_RS08095 () | 1679439..1679678 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF28196_RS08100 () | 1679948..1680943 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CDIF28196_RS08105 () | 1680996..1682684 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF28196_RS08110 () | 1683042..1684172 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| CDIF28196_RS08115 () | 1684251..1684958 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CDIF28196_RS08120 () | 1684971..1685840 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CDIF28196_RS08125 () | 1686460..1686966 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28196_RS08130 () | 1687042..1687590 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDIF28196_RS08135 () | 1687602..1687943 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDIF28196_RS08140 () | 1688120..1688323 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDIF28196_RS08145 () | 1688371..1689180 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CDIF28196_RS08150 () | 1689227..1689436 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF28196_RS08155 () | 1689446..1689820 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF28196_RS08160 () | 1689896..1690093 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28196_RS08165 () | 1690124..1690516 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CDIF28196_RS19760 () | 1690497..1690646 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDIF28196_RS08170 () | 1690717..1691154 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF28196_RS08175 () | 1691166..1692332 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CDIF28196_RS08180 () | 1692347..1692682 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDIF28196_RS08185 () | 1692735..1693307 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF28196_RS08190 () | 1693330..1693902 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF28196_RS08195 () | 1693902..1695860 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CDIF28196_RS08200 () | 1695872..1698289 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CDIF28196_RS08205 () | 1698571..1698897 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDIF28196_RS08210 () | 1698846..1700216 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CDIF28196_RS19815 () | 1700240..1700377 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CDIF28196_RS08215 () | 1700370..1700849 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF28196_RS08220 () | 1701132..1701681 | + | 550 | Protein_1482 | Bro-N domain-containing protein | - |
| CDIF28196_RS08225 () | 1701876..1702850 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CDIF28196_RS19765 () | 1702871..1703380 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF28196_RS08240 () | 1703450..1704142 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CDIF28196_RS08245 () | 1704120..1705373 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CDIF28196_RS08250 () | 1705379..1706821 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CDIF28196_RS08255 () | 1706811..1708346 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CDIF28196_RS08260 () | 1708348..1708596 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDIF28196_RS08265 () | 1708664..1709227 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CDIF28196_RS08270 () | 1709239..1710129 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CDIF28196_RS08275 () | 1710148..1710381 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CDIF28196_RS08280 () | 1710391..1710792 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF28196_RS08285 () | 1710786..1711133 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDIF28196_RS08290 () | 1711133..1711423 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CDIF28196_RS08295 () | 1711533..1712339 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CDIF28196_RS08305 () | 1712688..1713125 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CDIF28196_RS08310 () | 1713118..1713294 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CDIF28196_RS08315 () | 1713295..1714605 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CDIF28196_RS08320 () | 1714622..1715092 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CDIF28196_RS08325 () | 1715151..1715978 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CDIF28196_RS08330 () | 1716050..1716490 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF28196_RS08340 () | 1716831..1716992 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1716912..1717051 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1716912..1717051 | - | 140 | NuclAT_3 | - | Antitoxin Detail |
| - () | 1717396..1717444 | - | 49 | NuclAT_5 | - | - |
| - () | 1717396..1717444 | - | 49 | NuclAT_6 | - | - |
| CDIF28196_RS08345 () | 1718329..1718517 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDIF28196_RS08350 () | 1718636..1719502 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CDIF28196_RS08360 () | 1720367..1720894 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CDIF28196_RS08365 () | 1721032..1721799 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CDIF28196_RS08370 () | 1721865..1724237 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CDIF28196_RS08375 () | 1724254..1724943 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF28196_RS08380 () | 1724936..1726828 | + | 1893 | WP_009893140.1 | C40 family peptidase | - |
| CDIF28196_RS08385 () | 1726842..1727102 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CDIF28196_RS08390 () | 1727107..1727526 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CDIF28196_RS08395 () | 1727527..1728576 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CDIF28196_RS08400 () | 1728569..1729186 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDIF28196_RS08405 () | 1729198..1730223 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CDIF28196_RS08410 () | 1730240..1731766 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CDIF28196_RS08415 () | 1731781..1732074 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CDIF28196_RS08420 () | 1732074..1732256 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CDIF28196_RS08425 () | 1732290..1732856 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CDIF28196_RS08430 () | 1732887..1733177 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CDIF28196_RS08435 () | 1733181..1733438 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDIF28196_RS08440 () | 1733699..1734562 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CDIF28196_RS08445 () | 1734641..1735453 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF28196_RS08450 () | 1735547..1737946 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| CDIF28196_RS08455 () | 1737987..1738172 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF28196_RS08460 () | 1738867..1739544 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CDIF28196_RS08465 () | 1739718..1741754 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CDIF28196_RS08470 () | 1741945..1742511 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDIF28196_RS08475 () | 1742795..1743322 | + | 528 | Protein_1529 | alpha/beta fold hydrolase | - |
| CDIF28196_RS08485 () | 1743954..1744061 | + | 108 | WP_009889455.1 | transposase | - |
| CDIF28196_RS08490 () | 1744063..1745180 | + | 1118 | Protein_1531 | IS200/IS605 family element transposase accessory protein TnpB | - |
| CDIF28196_RS08495 () | 1745245..1745706 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CDIF28196_RS08500 () | 1746171..1747385 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28196_RS08505 () | 1747805..1748326 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CDIF28196_RS08510 () | 1748682..1749479 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDIF28196_RS08515 () | 1749589..1750179 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF28196_RS08520 () | 1750245..1751942 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CDIF28196_RS08525 () | 1752156..1752995 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |