MGE detailed information
MGE type: Prophage MGE length: 64799 bp
Accession: NZ_CP028361 Location: 1727564..1792362 Organism: Clostridioides difficile strain DSM 105001 Replicon: chromosome
Accession: NZ_CP028361 Location: 1727564..1792362 Organism: Clostridioides difficile strain DSM 105001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM105001_RS08215 () | 1722632..1723393 | + | 762 | WP_021367753.1 | M48 family metallopeptidase | - |
| DSM105001_RS08220 () | 1723924..1724163 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| DSM105001_RS08225 () | 1724467..1725462 | + | 996 | WP_071605616.1 | ketol-acid reductoisomerase | - |
| DSM105001_RS08230 () | 1725515..1727203 | + | 1689 | WP_021367754.1 | biosynthetic-type acetolactate synthase large subunit | - |
| DSM105001_RS08235 () | 1727564..1728694 | - | 1131 | WP_021367755.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| DSM105001_RS08240 () | 1728934..1729440 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DSM105001_RS08245 () | 1729703..1731292 | - | 1590 | WP_021368282.1 | SIR2 family protein | - |
| DSM105001_RS08250 () | 1731316..1731879 | - | 564 | WP_003429806.1 | XRE family transcriptional regulator | - |
| DSM105001_RS08255 () | 1732032..1732253 | + | 222 | WP_003429807.1 | ISNCY family transposase ISH7A | Transposase |
| DSM105001_RS08260 () | 1732256..1733071 | + | 816 | WP_021366595.1 | phage regulatory protein/antirepressor Ant | - |
| DSM105001_RS08265 () | 1733250..1733429 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| DSM105001_RS08270 () | 1733565..1733744 | + | 180 | WP_003429812.1 | hypothetical protein | - |
| DSM105001_RS08275 () | 1733737..1734528 | + | 792 | WP_021367758.1 | ORF6N domain-containing protein | - |
| DSM105001_RS08280 () | 1734611..1734805 | - | 195 | WP_021368281.1 | hypothetical protein | - |
| DSM105001_RS08285 () | 1734961..1735179 | - | 219 | WP_015981528.1 | helix-turn-helix domain-containing protein | - |
| DSM105001_RS08290 () | 1735292..1735486 | + | 195 | WP_021367760.1 | helix-turn-helix transcriptional regulator | - |
| DSM105001_RS08295 () | 1735528..1736322 | + | 795 | WP_021367761.1 | phage regulatory protein/antirepressor Ant | - |
| DSM105001_RS08300 () | 1736379..1736588 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| DSM105001_RS08305 () | 1736598..1736972 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| DSM105001_RS08310 () | 1737048..1737245 | + | 198 | WP_021366327.1 | helix-turn-helix transcriptional regulator | - |
| DSM105001_RS08315 () | 1737276..1737668 | + | 393 | WP_021367762.1 | helix-turn-helix domain-containing protein | - |
| DSM105001_RS08320 () | 1737655..1737798 | + | 144 | WP_021365379.1 | hypothetical protein | - |
| DSM105001_RS08325 () | 1737965..1738207 | + | 243 | WP_021365380.1 | hypothetical protein | - |
| DSM105001_RS08330 () | 1738286..1738567 | + | 282 | WP_021367764.1 | hypothetical protein | - |
| DSM105001_RS08335 () | 1738554..1739192 | + | 639 | WP_021365382.1 | ERF family protein | - |
| DSM105001_RS08340 () | 1739202..1740098 | + | 897 | WP_021366365.1 | DnaD domain protein | - |
| DSM105001_RS08345 () | 1740118..1740537 | + | 420 | WP_021367767.1 | single-stranded DNA-binding protein | - |
| DSM105001_RS08350 () | 1740567..1740929 | + | 363 | WP_021365384.1 | hypothetical protein | - |
| DSM105001_RS08355 () | 1741163..1742014 | + | 852 | WP_021366349.1 | DNA cytosine methyltransferase | - |
| DSM105001_RS08360 () | 1742331..1742528 | + | 198 | WP_021365385.1 | hypothetical protein | - |
| DSM105001_RS08365 () | 1742555..1742971 | + | 417 | WP_021367768.1 | DUF1064 domain-containing protein | - |
| DSM105001_RS08370 () | 1742990..1743490 | + | 501 | WP_021362352.1 | hypothetical protein | - |
| DSM105001_RS08375 () | 1743912..1744118 | + | 207 | WP_021368279.1 | hypothetical protein | - |
| DSM105001_RS08380 () | 1744607..1745794 | + | 1188 | WP_021368283.1 | hypothetical protein | - |
| DSM105001_RS08385 () | 1745739..1746125 | + | 387 | WP_022620543.1 | hypothetical protein | - |
| DSM105001_RS08390 () | 1746130..1746900 | + | 771 | WP_021366361.1 | restriction endonuclease | - |
| DSM105001_RS08395 () | 1746958..1747641 | + | 684 | WP_021367771.1 | helix-turn-helix domain-containing protein | - |
| DSM105001_RS08400 () | 1747619..1748872 | + | 1254 | WP_021377423.1 | PBSX family phage terminase large subunit | - |
| DSM105001_RS08405 () | 1748878..1750317 | + | 1440 | WP_021369362.1 | phage portal protein | - |
| DSM105001_RS08410 () | 1750307..1751800 | + | 1494 | WP_021369374.1 | minor capsid protein | - |
| DSM105001_RS08415 () | 1751766..1752008 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| DSM105001_RS08420 () | 1752079..1752273 | + | 195 | WP_021368239.1 | hypothetical protein | - |
| DSM105001_RS08425 () | 1752318..1752881 | + | 564 | WP_021367051.1 | phage scaffolding protein | - |
| DSM105001_RS08430 () | 1752893..1753783 | + | 891 | WP_021369354.1 | hypothetical protein | - |
| DSM105001_RS08435 () | 1753802..1754035 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| DSM105001_RS08440 () | 1754045..1754446 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| DSM105001_RS08445 () | 1754440..1754787 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| DSM105001_RS08450 () | 1754787..1755077 | + | 291 | WP_021358995.1 | HK97 gp10 family phage protein | - |
| DSM105001_RS08455 () | 1755187..1755993 | + | 807 | WP_021358994.1 | hypothetical protein | - |
| DSM105001_RS08460 () | 1756342..1756779 | + | 438 | WP_021362375.1 | hypothetical protein | - |
| DSM105001_RS08465 () | 1756772..1756948 | + | 177 | WP_021362376.1 | hypothetical protein | - |
| DSM105001_RS08470 () | 1756950..1758260 | + | 1311 | WP_021368245.1 | phage tail sheath family protein | - |
| DSM105001_RS08475 () | 1758277..1758747 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| DSM105001_RS08480 () | 1758819..1759259 | + | 441 | WP_003429853.1 | phage portal protein | - |
| DSM105001_RS08485 () | 1759600..1759761 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1759681..1759814 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1759681..1759814 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1760159..1760264 | - | 106 | NuclAT_4 | - | - |
| - () | 1760159..1760264 | - | 106 | NuclAT_5 | - | - |
| DSM105001_RS08490 () | 1761086..1761259 | + | 174 | WP_018112722.1 | hypothetical protein | - |
| DSM105001_RS08495 () | 1761383..1762210 | + | 828 | WP_021368246.1 | hypothetical protein | - |
| DSM105001_RS08500 () | 1762273..1762449 | + | 177 | WP_009894378.1 | hypothetical protein | - |
| DSM105001_RS08505 () | 1762862..1763065 | - | 204 | WP_021367646.1 | helix-turn-helix transcriptional regulator | - |
| DSM105001_RS08510 () | 1763309..1763695 | + | 387 | Protein_1587 | ORF6N domain-containing protein | - |
| DSM105001_RS08515 () | 1763759..1764112 | + | 354 | WP_095890195.1 | hypothetical protein | - |
| DSM105001_RS08520 () | 1765164..1765679 | + | 516 | WP_021368244.1 | zinc ribbon domain-containing protein | - |
| DSM105001_RS08525 () | 1765744..1768137 | + | 2394 | WP_021377356.1 | tape measure protein | - |
| DSM105001_RS08530 () | 1768153..1768842 | + | 690 | WP_021367654.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DSM105001_RS08535 () | 1768835..1770727 | + | 1893 | WP_021377355.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| DSM105001_RS08540 () | 1770741..1771001 | + | 261 | WP_009896648.1 | DUF2577 domain-containing protein | - |
| DSM105001_RS08545 () | 1771006..1771425 | + | 420 | WP_021377354.1 | DUF2634 domain-containing protein | - |
| DSM105001_RS08550 () | 1771426..1772475 | + | 1050 | WP_022620629.1 | baseplate J/gp47 family protein | - |
| DSM105001_RS08555 () | 1772468..1773085 | + | 618 | WP_021373357.1 | YmfQ family protein | - |
| DSM105001_RS08560 () | 1773097..1774089 | + | 993 | WP_021377352.1 | phage tail protein | - |
| DSM105001_RS08565 () | 1774106..1775818 | + | 1713 | WP_021367783.1 | glycine rich family protein | - |
| DSM105001_RS08570 () | 1775839..1776186 | + | 348 | WP_003429875.1 | hypothetical protein | - |
| DSM105001_RS08575 () | 1776198..1776368 | + | 171 | WP_003429877.1 | hypothetical protein | - |
| DSM105001_RS08580 () | 1776399..1776965 | + | 567 | WP_021367785.1 | hypothetical protein | - |
| DSM105001_RS08585 () | 1776996..1777286 | + | 291 | WP_021363500.1 | hypothetical protein | - |
| DSM105001_RS08590 () | 1777290..1777547 | + | 258 | WP_021367786.1 | phage holin family protein | - |
| DSM105001_RS08595 () | 1777808..1778671 | + | 864 | Protein_1604 | Abi family protein | - |
| DSM105001_RS08600 () | 1778750..1779562 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DSM105001_RS08605 () | 1779656..1782055 | + | 2400 | WP_021367792.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| DSM105001_RS08610 () | 1782096..1782281 | - | 186 | WP_021359196.1 | hypothetical protein | - |
| DSM105001_RS08615 () | 1782829..1783005 | - | 177 | WP_016728851.1 | hypothetical protein | - |
| DSM105001_RS08620 () | 1783722..1784399 | + | 678 | WP_009896673.1 | manganese catalase family protein | - |
| DSM105001_RS08625 () | 1784573..1786609 | + | 2037 | WP_021364464.1 | thioredoxin domain-containing protein | - |
| DSM105001_RS08630 () | 1786800..1787366 | - | 567 | WP_003436635.1 | MarR family transcriptional regulator | - |
| DSM105001_RS08635 () | 1787654..1788589 | + | 936 | WP_003436568.1 | alpha/beta hydrolase | - |
| DSM105001_RS08640 () | 1789054..1790268 | + | 1215 | WP_021364474.1 | ISNCY family transposase ISH7A | Transposase |
| DSM105001_RS08645 () | 1790688..1791209 | - | 522 | WP_021364465.1 | GNAT family N-acetyltransferase | - |
| DSM105001_RS08650 () | 1791565..1792362 | + | 798 | WP_016728856.1 | 3D domain-containing protein | - |
| DSM105001_RS08655 () | 1792472..1793062 | + | 591 | WP_003436558.1 | SGNH/GDSL hydrolase family protein | - |
| DSM105001_RS08660 () | 1793128..1794825 | + | 1698 | WP_009896733.1 | phospho-sugar mutase | - |
| DSM105001_RS08665 () | 1795039..1795878 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|