MGE detailed information
MGE type: Prophage MGE length: 63020 bp
Accession: NZ_CP025044 Location: 1576962..1639981 Organism: Clostridioides difficile strain R0104a Replicon: chromosome
Accession: NZ_CP025044 Location: 1576962..1639981 Organism: Clostridioides difficile strain R0104a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR57_RS07435 () | 1573544..1574674 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| CWR57_RS07440 () | 1574753..1575460 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CWR57_RS07445 () | 1575473..1576342 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CWR57_RS07450 () | 1576962..1577468 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CWR57_RS07455 () | 1577544..1578092 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CWR57_RS07460 () | 1578104..1578445 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CWR57_RS07465 () | 1578622..1578825 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CWR57_RS07470 () | 1578873..1579682 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CWR57_RS07475 () | 1579729..1579938 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CWR57_RS07480 () | 1579948..1580322 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CWR57_RS07485 () | 1580398..1580595 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CWR57_RS07490 () | 1580626..1581018 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CWR57_RS19705 () | 1580999..1581148 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CWR57_RS07495 () | 1581219..1581656 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CWR57_RS07500 () | 1581668..1582834 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CWR57_RS07505 () | 1582849..1583184 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CWR57_RS07510 () | 1583237..1583809 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CWR57_RS07515 () | 1583832..1584404 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CWR57_RS07520 () | 1584404..1586362 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CWR57_RS07525 () | 1586374..1588791 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CWR57_RS07530 () | 1589073..1589399 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CWR57_RS07535 () | 1589348..1590718 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CWR57_RS19710 () | 1590742..1590879 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CWR57_RS07540 () | 1590872..1591351 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CWR57_RS07545 () | 1591634..1592183 | + | 550 | Protein_1408 | Bro-N domain-containing protein | - |
| CWR57_RS07550 () | 1592378..1593352 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CWR57_RS19715 () | 1593373..1593882 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CWR57_RS07565 () | 1593952..1594644 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CWR57_RS07570 () | 1594622..1595875 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CWR57_RS07575 () | 1595881..1597323 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CWR57_RS07580 () | 1597313..1598848 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CWR57_RS07585 () | 1598850..1599098 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CWR57_RS07590 () | 1599166..1599729 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CWR57_RS07595 () | 1599741..1600631 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CWR57_RS07600 () | 1600650..1600883 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CWR57_RS07605 () | 1600893..1601294 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CWR57_RS07610 () | 1601288..1601635 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CWR57_RS07615 () | 1601635..1601925 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CWR57_RS07620 () | 1602035..1602841 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CWR57_RS07625 () | 1603190..1603627 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CWR57_RS07630 () | 1603620..1603796 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CWR57_RS07635 () | 1603797..1605107 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CWR57_RS07640 () | 1605124..1605594 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CWR57_RS07645 () | 1605653..1606480 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CWR57_RS07650 () | 1606552..1606992 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CWR57_RS07660 () | 1607333..1607494 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1607414..1607553 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1607414..1607553 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1607898..1607946 | - | 49 | NuclAT_4 | - | - |
| - () | 1607898..1607946 | - | 49 | NuclAT_5 | - | - |
| CWR57_RS07665 () | 1608831..1609019 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CWR57_RS07670 () | 1609138..1610004 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CWR57_RS07680 () | 1610869..1611396 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CWR57_RS07685 () | 1611534..1612301 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CWR57_RS07690 () | 1612367..1614739 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CWR57_RS07695 () | 1614756..1615445 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CWR57_RS07700 () | 1615438..1617330 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CWR57_RS07705 () | 1617344..1617604 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CWR57_RS07710 () | 1617609..1618028 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CWR57_RS07715 () | 1618029..1619078 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CWR57_RS07720 () | 1619071..1619688 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CWR57_RS07725 () | 1619700..1620725 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CWR57_RS07730 () | 1620742..1622268 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CWR57_RS07735 () | 1622283..1622576 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CWR57_RS07740 () | 1622576..1622758 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CWR57_RS07745 () | 1622792..1623358 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CWR57_RS07750 () | 1623389..1623679 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CWR57_RS07755 () | 1623683..1623940 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CWR57_RS07760 () | 1624201..1625064 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CWR57_RS07765 () | 1625143..1625955 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CWR57_RS07770 () | 1626049..1628448 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CWR57_RS07775 () | 1628489..1628674 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CWR57_RS07780 () | 1629369..1630046 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CWR57_RS07785 () | 1630220..1632256 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CWR57_RS07790 () | 1632447..1633013 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CWR57_RS07795 () | 1633297..1633824 | + | 528 | Protein_1455 | alpha/beta fold hydrolase | - |
| CWR57_RS07805 () | 1634456..1634563 | + | 108 | WP_009889455.1 | transposase | - |
| CWR57_RS07810 () | 1634565..1635682 | + | 1118 | Protein_1457 | IS200-IS605 family transposase ISBth17 | Transposase |
| CWR57_RS07815 () | 1635747..1636208 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CWR57_RS07820 () | 1636673..1637887 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CWR57_RS07825 () | 1638307..1638828 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CWR57_RS07830 () | 1639184..1639981 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CWR57_RS07835 () | 1640091..1640681 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CWR57_RS07840 () | 1640747..1642444 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CWR57_RS07845 () | 1642658..1643497 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0.001 |