MGE detailed information
MGE type: Prophage MGE length: 61204 bp
Accession: NZ_CP012309 Location: 1696319..1757522 Organism: Clostridioides difficile strain DSM 28668 Replicon: chromosome
Accession: NZ_CP012309 Location: 1696319..1757522 Organism: Clostridioides difficile strain DSM 28668 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28668_RS08085 () | 1691424..1692185 | + | 762 | WP_003436655.1 | M48 family metallopeptidase | - |
| CDIF28668_RS08090 () | 1692716..1692955 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF28668_RS08095 () | 1693225..1694220 | + | 996 | WP_118822211.1 | ketol-acid reductoisomerase | - |
| CDIF28668_RS08100 () | 1694273..1695961 | + | 1689 | WP_021379250.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF28668_RS08105 () | 1696319..1697449 | - | 1131 | WP_021367755.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF28668_RS08110 () | 1697689..1698195 | - | 507 | WP_118822212.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28668_RS08115 () | 1698271..1698672 | - | 402 | WP_118822624.1 | helix-turn-helix domain-containing protein | - |
| CDIF28668_RS08120 () | 1698938..1699501 | - | 564 | WP_095892967.1 | XRE family transcriptional regulator | - |
| CDIF28668_RS08125 () | 1699654..1699875 | + | 222 | WP_118822213.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF28668_RS08130 () | 1699878..1700693 | + | 816 | WP_118822214.1 | phage regulatory protein/antirepressor Ant | - |
| CDIF28668_RS08135 () | 1700740..1700949 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF28668_RS08140 () | 1700959..1701333 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF28668_RS08145 () | 1701409..1701606 | + | 198 | WP_009902588.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28668_RS08150 () | 1701637..1702029 | + | 393 | WP_003433509.1 | helix-turn-helix domain-containing protein | - |
| CDIF28668_RS19525 () | 1702010..1702159 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDIF28668_RS08155 () | 1702230..1702667 | + | 438 | WP_118822215.1 | hypothetical protein | - |
| CDIF28668_RS08160 () | 1702679..1703845 | + | 1167 | WP_118822216.1 | DUF2800 domain-containing protein | - |
| CDIF28668_RS08165 () | 1703860..1704195 | + | 336 | WP_118822217.1 | hypothetical protein | - |
| CDIF28668_RS08170 () | 1704248..1704820 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF28668_RS08175 () | 1704843..1705415 | + | 573 | WP_003429823.1 | DUF2815 family protein | - |
| CDIF28668_RS08180 () | 1705415..1707373 | + | 1959 | WP_118822218.1 | DNA polymerase | - |
| CDIF28668_RS08185 () | 1707385..1709802 | + | 2418 | WP_118822219.1 | virulence-associated E family protein | - |
| CDIF28668_RS08190 () | 1710083..1710409 | + | 327 | WP_003429828.1 | VRR-NUC domain-containing protein | - |
| CDIF28668_RS08195 () | 1710358..1711728 | + | 1371 | WP_118822220.1 | DEAD/DEAH box helicase | - |
| CDIF28668_RS19595 () | 1711752..1711889 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDIF28668_RS08200 () | 1711882..1712361 | + | 480 | WP_021401220.1 | helix-turn-helix domain-containing protein | - |
| CDIF28668_RS08205 () | 1712504..1712761 | + | 258 | WP_021401234.1 | hypothetical protein | - |
| CDIF28668_RS08210 () | 1712907..1713842 | + | 936 | WP_021394825.1 | DUF4868 domain-containing protein | - |
| CDIF28668_RS08215 () | 1713861..1714445 | + | 585 | WP_021394826.1 | hypothetical protein | - |
| CDIF28668_RS08220 () | 1714458..1715150 | + | 693 | WP_118822221.1 | hypothetical protein | - |
| CDIF28668_RS08225 () | 1715128..1716381 | + | 1254 | WP_192879819.1 | PBSX family phage terminase large subunit | - |
| CDIF28668_RS08230 () | 1716387..1717829 | + | 1443 | WP_118822222.1 | phage portal protein | - |
| CDIF28668_RS08235 () | 1717819..1719216 | + | 1398 | WP_118822223.1 | minor capsid protein | - |
| CDIF28668_RS08240 () | 1719231..1719431 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF28668_RS08245 () | 1719497..1720060 | + | 564 | WP_021365217.1 | phage scaffolding protein | - |
| CDIF28668_RS08250 () | 1720072..1720971 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDIF28668_RS08255 () | 1720971..1721204 | + | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF28668_RS08260 () | 1721214..1721615 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF28668_RS08265 () | 1721609..1721956 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| CDIF28668_RS08270 () | 1721956..1722381 | + | 426 | WP_109420488.1 | HK97 gp10 family phage protein | - |
| CDIF28668_RS08275 () | 1722374..1722811 | + | 438 | WP_118822224.1 | hypothetical protein | - |
| CDIF28668_RS08280 () | 1722804..1722980 | + | 177 | WP_021362376.1 | hypothetical protein | - |
| CDIF28668_RS08285 () | 1722982..1724292 | + | 1311 | WP_118822225.1 | phage tail sheath family protein | - |
| CDIF28668_RS08290 () | 1724309..1724779 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF28668_RS08295 () | 1724851..1725291 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF28668_RS08305 () | 1725632..1725793 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1725713..1725846 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1725713..1725846 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1726191..1726296 | - | 106 | NuclAT_4 | - | - |
| - () | 1726191..1726296 | - | 106 | NuclAT_5 | - | - |
| CDIF28668_RS08310 () | 1726506..1726688 | + | 183 | WP_118822226.1 | hypothetical protein | - |
| CDIF28668_RS08315 () | 1726818..1727699 | + | 882 | WP_009901511.1 | hypothetical protein | - |
| CDIF28668_RS08320 () | 1727771..1730113 | + | 2343 | WP_118822628.1 | tape measure protein | - |
| CDIF28668_RS08325 () | 1730125..1730814 | + | 690 | WP_118822227.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF28668_RS08330 () | 1730807..1732771 | + | 1965 | WP_118822228.1 | Murein DD-endopeptidase MepH | VF |
| CDIF28668_RS08335 () | 1732785..1733045 | + | 261 | WP_118822229.1 | DUF2577 domain-containing protein | - |
| CDIF28668_RS08340 () | 1733050..1733469 | + | 420 | WP_118822230.1 | DUF2634 domain-containing protein | - |
| CDIF28668_RS08345 () | 1733470..1734519 | + | 1050 | WP_118822231.1 | baseplate J/gp47 family protein | - |
| CDIF28668_RS08350 () | 1734512..1735129 | + | 618 | WP_016728466.1 | YmfQ family protein | - |
| CDIF28668_RS08355 () | 1735141..1736166 | + | 1026 | WP_118822232.1 | phage tail protein | - |
| CDIF28668_RS08360 () | 1736181..1737440 | + | 1260 | Protein_1516 | hypothetical protein | - |
| CDIF28668_RS08365 () | 1737777..1738076 | + | 300 | WP_118822233.1 | hypothetical protein | - |
| CDIF28668_RS08370 () | 1738076..1738258 | + | 183 | WP_021435063.1 | hypothetical protein | - |
| CDIF28668_RS08375 () | 1738291..1738482 | + | 192 | WP_021401357.1 | hypothetical protein | - |
| CDIF28668_RS08380 () | 1738499..1739632 | + | 1134 | WP_118822234.1 | kelch-like protein | - |
| CDIF28668_RS08385 () | 1739832..1740962 | + | 1131 | WP_118822235.1 | kelch-like protein | - |
| CDIF28668_RS08390 () | 1740979..1741344 | + | 366 | WP_077726188.1 | hypothetical protein | - |
| CDIF28668_RS08395 () | 1741368..1741502 | + | 135 | WP_021373362.1 | XkdX family protein | - |
| CDIF28668_RS19600 () | 1741713..1742393 | + | 681 | WP_192879820.1 | hypothetical protein | - |
| CDIF28668_RS08405 () | 1742411..1742701 | + | 291 | WP_118822236.1 | hypothetical protein | - |
| CDIF28668_RS08410 () | 1742701..1742883 | + | 183 | WP_118822237.1 | hypothetical protein | - |
| CDIF28668_RS08415 () | 1742921..1743151 | + | 231 | WP_022582756.1 | hemolysin XhlA family protein | - |
| CDIF28668_RS08420 () | 1743171..1743428 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDIF28668_RS08425 () | 1743689..1744552 | + | 864 | Protein_1529 | Abi family protein | - |
| CDIF28668_RS08430 () | 1744631..1745443 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF28668_RS08435 () | 1745537..1747936 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CDIF28668_RS08440 () | 1747977..1748162 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF28668_RS08445 () | 1748887..1749564 | + | 678 | WP_003436641.1 | manganese catalase family protein | - |
| CDIF28668_RS08450 () | 1749733..1751769 | + | 2037 | WP_074115766.1 | thioredoxin domain-containing protein | - |
| CDIF28668_RS08455 () | 1751960..1752526 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDIF28668_RS08460 () | 1752814..1753749 | + | 936 | Protein_1536 | alpha/beta hydrolase | - |
| CDIF28668_RS08465 () | 1754214..1755428 | + | 1215 | WP_118822238.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF28668_RS08470 () | 1755848..1756369 | - | 522 | WP_016728855.1 | GNAT family N-acetyltransferase | - |
| CDIF28668_RS08475 () | 1756725..1757522 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDIF28668_RS08480 () | 1757632..1758222 | + | 591 | WP_003436558.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF28668_RS08485 () | 1758288..1759985 | + | 1698 | WP_021359199.1 | phospho-sugar mutase | - |
| CDIF28668_RS08490 () | 1760199..1761038 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|