MGE detailed information
MGE type: Prophage MGE length: 15639 bp
Accession: NZ_CP016318 Location: 2615678..2631316 Organism: Clostridioides difficile strain 630 delta erm Replicon: chromosome
Accession: NZ_CP016318 Location: 2615678..2631316 Organism: Clostridioides difficile strain 630 delta erm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF630erm_RS12590 () | 2610895..2611596 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF630erm_RS12595 () | 2611589..2611912 | + | 324 | WP_011861511.1 | AzlD domain-containing protein | - |
| CDIF630erm_RS12600 () | 2612118..2614178 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CDIF630erm_RS12610 () | 2614374..2615066 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF630erm_RS12615 () | 2615678..2616052 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF630erm_RS12620 () | 2616271..2616504 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF630erm_RS12625 () | 2616488..2616901 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CDIF630erm_RS12630 () | 2616920..2617216 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CDIF630erm_RS12635 () | 2617499..2617816 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CDIF630erm_RS12640 () | 2617952..2618416 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CDIF630erm_RS20715 () | 2618744..2618905 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF630erm_RS12655 () | 2618957..2619770 | - | 814 | Protein_2354 | toxin Bro | - |
| CDIF630erm_RS20720 () | 2619890..2620042 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CDIF630erm_RS12660 () | 2621451..2622374 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - () | 2622518..2622647 | + | 130 | NuclAT_9 | - | Antitoxin Detail |
| CDIF630erm_RS20725 () | 2622568..2622720 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF630erm_RS12670 () | 2622994..2623317 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF630erm_RS12675 () | 2623353..2623607 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF630erm_RS12680 () | 2624043..2624561 | - | 519 | Protein_2360 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF630erm_RS20430 () | 2624851..2625226 | - | 376 | Protein_2361 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF630erm_RS12690 () | 2625331..2625708 | - | 378 | WP_011861518.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF630erm_RS12695 () | 2626512..2627006 | + | 495 | WP_011861519.1 | Type II secretion system protein G | VF |
| CDIF630erm_RS20435 () | 2627395..2627565 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CDIF630erm_RS12700 () | 2628042..2628231 | - | 190 | Protein_2365 | IS3 family transposase ISEfa10 | Transposase |
| CDIF630erm_RS12705 () | 2628393..2628743 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CDIF630erm_RS12710 () | 2628745..2628945 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CDIF630erm_RS20730 () | 2629268..2629444 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF630erm_RS12720 () | 2629669..2629869 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF630erm_RS12725 () | 2630504..2631316 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF630erm_RS12730 () | 2631326..2632117 | + | 792 | WP_011861521.1 | ABC transporter permease | - |
| CDIF630erm_RS12735 () | 2632119..2632814 | + | 696 | WP_011861522.1 | ATP-binding cassette domain-containing protein | - |
| CDIF630erm_RS12740 () | 2632801..2633532 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF630erm_RS12745 () | 2633846..2634646 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF630erm_RS12750 () | 2635186..2635902 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.002 |