MGE detailed information
MGE type: Prophage MGE length: 22174 bp
Accession: NZ_CP026615 Location: 1887237..1909410 Organism: Clostridioides difficile strain R3 Replicon: chromosome
Accession: NZ_CP026615 Location: 1887237..1909410 Organism: Clostridioides difficile strain R3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E42_RS08405 () | 1882558..1883352 | - | 795 | WP_009905672.1 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | - |
| C4E42_RS08410 () | 1883501..1883869 | + | 369 | WP_003424204.1 | MerR family transcriptional regulator | - |
| C4E42_RS08415 () | 1884184..1884546 | + | 363 | WP_009905671.1 | metal-dependent transcriptional regulator | - |
| C4E42_RS08420 () | 1884558..1886213 | + | 1656 | WP_003424202.1 | PocR ligand-binding domain-containing protein | - |
| C4E42_RS08425 () | 1886274..1887026 | + | 753 | WP_003424201.1 | TSUP family transporter | - |
| C4E42_RS08435 () | 1887542..1887601 | - | 60 | WP_071585685.1 | hypothetical protein | - |
| C4E42_RS08440 () | 1887995..1888288 | + | 294 | WP_009889969.1 | autorepressor SdpR family transcription factor | - |
| C4E42_RS08445 () | 1888269..1888910 | + | 642 | WP_003424198.1 | SdpI family protein | - |
| C4E42_RS08450 () | 1889170..1889501 | + | 332 | Protein_1643 | carboxymuconolactone decarboxylase family protein | - |
| C4E42_RS08455 () | 1890033..1890197 | + | 165 | WP_003424195.1 | hypothetical protein | - |
| C4E42_RS08460 () | 1890421..1891266 | - | 846 | WP_003424194.1 | DUF4878 domain-containing protein | - |
| C4E42_RS19325 () | 1891811..1892356 | - | 546 | WP_077699404.1 | CsgBAC operon transcriptional regulatory protein ; Integrase | Integrase |
| C4E42_RS19330 () | 1892422..1892664 | - | 243 | WP_003424191.1 | hypothetical protein | - |
| C4E42_RS08475 () | 1893184..1893336 | + | 153 | WP_003424190.1 | hypothetical protein | Toxin Detail |
| - () | 1893280..1893380 | - | 101 | NuclAT_0 | - | Antitoxin Detail |
| C4E42_RS08480 () | 1897260..1897448 | - | 189 | WP_003424185.1 | helix-turn-helix transcriptional regulator | - |
| C4E42_RS08485 () | 1897636..1897869 | + | 234 | WP_003424184.1 | hypothetical protein | - |
| C4E42_RS08490 () | 1897856..1898113 | + | 258 | WP_003424182.1 | hypothetical protein | - |
| C4E42_RS08495 () | 1898106..1898486 | + | 381 | WP_003424180.1 | hypothetical protein | - |
| C4E42_RS08505 () | 1899023..1899217 | + | 195 | WP_003424168.1 | hypothetical protein | - |
| C4E42_RS08520 () | 1900203..1900775 | + | 573 | WP_003424166.1 | hypothetical protein | - |
| C4E42_RS08525 () | 1901218..1901589 | + | 372 | WP_003424165.1 | hypothetical protein | - |
| C4E42_RS08530 () | 1901728..1901985 | + | 258 | WP_003424164.1 | hypothetical protein | - |
| C4E42_RS08535 () | 1902308..1902592 | + | 285 | WP_003424163.1 | hypothetical protein | - |
| C4E42_RS08540 () | 1902869..1903105 | - | 237 | WP_003424162.1 | hypothetical protein | - |
| C4E42_RS08545 () | 1903442..1903669 | + | 228 | WP_003424160.1 | helix-turn-helix domain-containing protein | - |
| C4E42_RS08550 () | 1903656..1903994 | + | 339 | WP_003424159.1 | hypothetical protein | - |
| C4E42_RS08555 () | 1904520..1905005 | + | 486 | WP_009905654.1 | SH3 domain-containing protein | - |
| C4E42_RS08560 () | 1905343..1905750 | + | 408 | WP_029158138.1 | hypothetical protein | - |
| C4E42_RS08565 () | 1906594..1907145 | + | 552 | WP_003424155.1 | tryptophan transporter | - |
| C4E42_RS08575 () | 1907974..1909410 | + | 1437 | WP_009905653.1 | HTH-type transcriptional regulator PgrR | VF |
| C4E42_RS08580 () | 1909661..1911097 | + | 1437 | WP_003424153.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| C4E42_RS08590 () | 1911505..1911843 | - | 339 | WP_009905652.1 | DUF3784 domain-containing protein | - |
| C4E42_RS08595 () | 1912148..1912759 | - | 612 | WP_003424150.1 | CoA pyrophosphatase | - |
| C4E42_RS08600 () | 1912984..1913904 | - | 921 | WP_003424149.1 | PhzF family isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|