MGE detailed information
MGE type: Prophage MGE length: 16865 bp
Accession: NZ_CP028361 Location: 2621312..2638176 Organism: Clostridioides difficile strain DSM 105001 Replicon: chromosome
Accession: NZ_CP028361 Location: 2621312..2638176 Organism: Clostridioides difficile strain DSM 105001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM105001_RS12460 () | 2616529..2617230 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| DSM105001_RS12465 () | 2617223..2617546 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| DSM105001_RS12470 () | 2617752..2619812 | - | 2061 | WP_021362720.1 | sensor histidine kinase | - |
| DSM105001_RS12475 () | 2620008..2620700 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| DSM105001_RS12480 () | 2621312..2621686 | - | 375 | WP_004454568.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| DSM105001_RS12485 () | 2621905..2622138 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| DSM105001_RS12490 () | 2622122..2622535 | + | 414 | WP_004454570.1 | hypothetical protein | - |
| DSM105001_RS12495 () | 2622554..2622850 | + | 297 | WP_009903134.1 | hypothetical protein | - |
| DSM105001_RS12500 () | 2623133..2623450 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| DSM105001_RS12505 () | 2623586..2624050 | + | 465 | WP_004454576.1 | hypothetical protein | - |
| DSM105001_RS12510 () | 2624379..2624540 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| DSM105001_RS12515 () | 2624592..2625406 | - | 815 | Protein_2387 | toxin Bro | - |
| DSM105001_RS12520 () | 2625526..2625678 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| DSM105001_RS12525 () | 2626817..2627740 | - | 924 | WP_021364626.1 | SHOCT domain-containing protein | - |
| - () | 2627884..2628013 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| DSM105001_RS12530 () | 2627934..2628086 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| DSM105001_RS12535 () | 2628360..2628683 | - | 324 | WP_021364628.1 | hypothetical protein | - |
| DSM105001_RS12540 () | 2628719..2628973 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| DSM105001_RS12545 () | 2629405..2629923 | - | 519 | Protein_2393 | IS200-IS605 family transposase ISEfa4 | Transposase |
| DSM105001_RS12550 () | 2630213..2630587 | - | 375 | Protein_2394 | BlaI/MecI/CopY family transcriptional regulator | - |
| DSM105001_RS12555 () | 2630692..2631069 | - | 378 | WP_021364350.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| DSM105001_RS12560 () | 2631874..2632368 | + | 495 | WP_021364347.1 | Type II secretion system protein G | VF |
| DSM105001_RS12565 () | 2632757..2632927 | + | 171 | WP_021416406.1 | hypothetical protein | - |
| DSM105001_RS12570 () | 2633404..2633593 | - | 190 | Protein_2398 | IS3 family transposase ISEfa10 | Transposase |
| DSM105001_RS12575 () | 2633755..2634105 | + | 351 | WP_021364349.1 | DUF3796 domain-containing protein | - |
| DSM105001_RS12580 () | 2634107..2634307 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| DSM105001_RS12585 () | 2634630..2634806 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| DSM105001_RS12590 () | 2635031..2635231 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| DSM105001_RS12595 () | 2635866..2636678 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| DSM105001_RS12600 () | 2636688..2637479 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| DSM105001_RS12605 () | 2637481..2638176 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| DSM105001_RS12610 () | 2638163..2638894 | + | 732 | WP_009897498.1 | membrane protein | - |
| DSM105001_RS12615 () | 2639208..2640008 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| DSM105001_RS12620 () | 2640547..2641263 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| DSM105001_RS12625 () | 2641232..2642821 | + | 1590 | WP_021364639.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.009 |