MGE detailed information
MGE type: Prophage MGE length: 66622 bp
Accession: NZ_CP081019 Location: 2664386..2731007 Organism: Clostridioides difficile strain CD099 Replicon: chromosome
Accession: NZ_CP081019 Location: 2664386..2731007 Organism: Clostridioides difficile strain CD099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2218_RS12355 (K2218_12345) | 2660870..2661709 | - | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
| K2218_RS12360 (K2218_12350) | 2661923..2663620 | - | 1698 | WP_021393310.1 | phospho-sugar mutase | - |
| K2218_RS12365 (K2218_12355) | 2663686..2664276 | - | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| K2218_RS12370 (K2218_12360) | 2664386..2665183 | - | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| K2218_RS12375 (K2218_12365) | 2665539..2666060 | + | 522 | WP_021387871.1 | GNAT family N-acetyltransferase | - |
| K2218_RS12380 (K2218_12370) | 2666482..2667696 | - | 1215 | WP_003429978.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS12385 (K2218_12375) | 2667913..2670042 | - | 2130 | WP_003433668.1 | ABC transporter permease | - |
| K2218_RS12390 (K2218_12380) | 2670065..2670799 | - | 735 | WP_021387870.1 | ABC transporter ATP-binding protein | - |
| K2218_RS12395 (K2218_12385) | 2671180..2672118 | - | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| K2218_RS12400 (K2218_12390) | 2672405..2672971 | + | 567 | WP_003429973.1 | MarR family transcriptional regulator | - |
| K2218_RS12405 (K2218_12395) | 2673164..2675200 | - | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| K2218_RS12410 (K2218_12400) | 2675374..2676051 | - | 678 | WP_003429969.1 | manganese catalase family protein | - |
| K2218_RS12415 | 2676394..2676522 | + | 129 | WP_003433669.1 | hypothetical protein | - |
| K2218_RS12420 (K2218_12405) | 2676768..2676944 | + | 177 | WP_016728851.1 | hypothetical protein | - |
| K2218_RS12425 | 2677105..2677233 | + | 129 | WP_003433683.1 | hypothetical protein | - |
| K2218_RS12430 (K2218_12410) | 2677462..2677647 | + | 186 | WP_003433687.1 | hypothetical protein | - |
| K2218_RS12435 | 2677689..2678582 | - | 894 | Protein_2370 | cell wall-binding repeat-containing protein | - |
| K2218_RS12440 (K2218_12420) | 2680137..2680949 | - | 813 | WP_021387710.1 | N-acetylmuramoyl-L-alanine amidase | - |
| K2218_RS12445 (K2218_12425) | 2681028..2681822 | - | 795 | Protein_2372 | Abi family protein | - |
| K2218_RS12450 (K2218_12430) | 2682151..2682408 | - | 258 | WP_021363501.1 | phage holin family protein | - |
| K2218_RS12455 (K2218_12435) | 2682412..2682702 | - | 291 | WP_021363500.1 | hypothetical protein | - |
| K2218_RS12460 (K2218_12440) | 2682733..2683299 | - | 567 | WP_021363499.1 | hypothetical protein | - |
| K2218_RS12465 (K2218_12445) | 2683330..2683500 | - | 171 | WP_003429877.1 | hypothetical protein | - |
| K2218_RS12470 (K2218_12450) | 2683512..2683859 | - | 348 | WP_003429875.1 | hypothetical protein | - |
| K2218_RS12475 (K2218_12455) | 2683880..2685592 | - | 1713 | WP_003429874.1 | glycine rich domain-containing protein | - |
| K2218_RS12480 (K2218_12460) | 2685609..2686601 | - | 993 | WP_021363498.1 | phage tail protein | - |
| K2218_RS12485 (K2218_12465) | 2686613..2687230 | - | 618 | WP_003433579.1 | YmfQ family protein | - |
| K2218_RS12490 (K2218_12470) | 2687223..2688269 | - | 1047 | WP_032512186.1 | baseplate J/gp47 family protein | - |
| K2218_RS12495 (K2218_12475) | 2688270..2688689 | - | 420 | WP_003433575.1 | DUF2634 domain-containing protein | - |
| K2218_RS12500 (K2218_12480) | 2688694..2688954 | - | 261 | WP_003433573.1 | DUF2577 domain-containing protein | - |
| K2218_RS12505 (K2218_12485) | 2688968..2690932 | - | 1965 | WP_003433571.1 | NlpC/P60 family protein | - |
| K2218_RS12510 (K2218_12490) | 2690925..2691626 | - | 702 | WP_003433569.1 | LysM peptidoglycan-binding domain-containing protein | - |
| K2218_RS12515 (K2218_12495) | 2691642..2694008 | - | 2367 | WP_003433567.1 | tape measure protein | - |
| K2218_RS12520 (K2218_12500) | 2694084..2694644 | - | 561 | WP_021387709.1 | ribosomal protein L7/L12 | - |
| K2218_RS12525 (K2218_12505) | 2695075..2695251 | - | 177 | WP_003433561.1 | hypothetical protein | - |
| K2218_RS12530 (K2218_12510) | 2695300..2696127 | - | 828 | WP_003433559.1 | hypothetical protein | - |
| K2218_RS12535 (K2218_12515) | 2696251..2696424 | - | 174 | WP_003433557.1 | hypothetical protein | - |
| K2218_RS12540 (K2218_12520) | 2696728..2697480 | - | 753 | WP_021387708.1 | SHOCT domain-containing protein | - |
| - | 2698575..2698708 | + | 134 | - | - | Antitoxin Detail |
| K2218_RS12545 (K2218_12525) | 2698628..2698789 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| K2218_RS12550 (K2218_12530) | 2699130..2699570 | - | 441 | WP_003429853.1 | phage portal protein | - |
| K2218_RS12555 (K2218_12535) | 2699642..2700112 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| K2218_RS12560 (K2218_12540) | 2700129..2701439 | - | 1311 | WP_003433550.1 | phage tail sheath family protein | - |
| K2218_RS12565 (K2218_12545) | 2701440..2701616 | - | 177 | WP_003433548.1 | hypothetical protein | - |
| K2218_RS12570 (K2218_12550) | 2701609..2702046 | - | 438 | WP_003433544.1 | hypothetical protein | - |
| K2218_RS12575 (K2218_12555) | 2702039..2702464 | - | 426 | WP_003433542.1 | HK97 gp10 family phage protein | - |
| K2218_RS12580 (K2218_12560) | 2702464..2702811 | - | 348 | WP_003433540.1 | hypothetical protein | - |
| K2218_RS12585 (K2218_12565) | 2702805..2703206 | - | 402 | WP_009888836.1 | hypothetical protein | - |
| K2218_RS12590 (K2218_12570) | 2703216..2703449 | - | 234 | WP_003433536.1 | hypothetical protein | - |
| K2218_RS12595 (K2218_12575) | 2703449..2704348 | - | 900 | WP_003429841.1 | phage capsid protein | - |
| K2218_RS12600 (K2218_12580) | 2704360..2704923 | - | 564 | WP_003433534.1 | phage scaffolding protein | - |
| K2218_RS12605 (K2218_12585) | 2705233..2705463 | - | 231 | WP_003429839.1 | hypothetical protein | - |
| K2218_RS12610 (K2218_12590) | 2705441..2706934 | - | 1494 | WP_003429838.1 | minor capsid protein | - |
| K2218_RS12615 (K2218_12595) | 2706924..2708363 | - | 1440 | WP_003429837.1 | phage portal protein | - |
| K2218_RS12620 (K2218_12600) | 2708369..2709622 | - | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| K2218_RS12625 (K2218_12605) | 2709600..2710292 | - | 693 | WP_003433528.1 | phage terminase small subunit | - |
| K2218_RS12630 (K2218_12610) | 2710363..2710872 | - | 510 | WP_003429834.1 | hypothetical protein | - |
| K2218_RS12635 (K2218_12615) | 2710893..2711867 | - | 975 | WP_003429833.1 | hypothetical protein | - |
| K2218_RS12640 (K2218_12620) | 2712170..2712406 | - | 237 | WP_003429832.1 | BRO family protein | - |
| K2218_RS12645 (K2218_12625) | 2712891..2713370 | - | 480 | WP_003433526.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| K2218_RS12650 (K2218_12630) | 2713363..2713500 | - | 138 | WP_003429830.1 | hypothetical protein | - |
| K2218_RS12655 (K2218_12635) | 2713524..2714894 | - | 1371 | WP_003433524.1 | DEAD/DEAH box helicase | - |
| K2218_RS12660 (K2218_12640) | 2714843..2715169 | - | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| K2218_RS12665 (K2218_12645) | 2715451..2717868 | - | 2418 | WP_003433519.1 | virulence-associated E family protein | - |
| K2218_RS12670 (K2218_12650) | 2717880..2719838 | - | 1959 | WP_003433517.1 | DNA polymerase | - |
| K2218_RS12675 (K2218_12655) | 2719838..2720410 | - | 573 | WP_003433516.1 | DUF2815 family protein | - |
| K2218_RS12680 (K2218_12660) | 2720433..2721005 | - | 573 | WP_003429822.1 | sigma factor | - |
| K2218_RS12685 (K2218_12665) | 2721058..2721393 | - | 336 | WP_003433515.1 | hypothetical protein | - |
| K2218_RS12690 (K2218_12670) | 2721408..2722574 | - | 1167 | WP_003433514.1 | DUF2800 domain-containing protein | - |
| K2218_RS12695 (K2218_12675) | 2722586..2723023 | - | 438 | WP_003433513.1 | hypothetical protein | - |
| K2218_RS12700 (K2218_12680) | 2723094..2723237 | - | 144 | WP_021387706.1 | hypothetical protein | - |
| K2218_RS12705 (K2218_12685) | 2723224..2723616 | - | 393 | WP_003433509.1 | helix-turn-helix domain-containing protein | - |
| K2218_RS12710 (K2218_12690) | 2723647..2723844 | - | 198 | WP_003433507.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS12715 (K2218_12695) | 2723920..2724294 | + | 375 | WP_003433505.1 | DUF6173 family protein | - |
| K2218_RS12720 (K2218_12700) | 2724304..2724513 | - | 210 | WP_009888812.1 | hypothetical protein | - |
| K2218_RS12725 (K2218_12705) | 2724560..2725390 | - | 831 | WP_021387707.1 | phage antirepressor KilAC domain-containing protein | - |
| K2218_RS12730 (K2218_12710) | 2725510..2726283 | - | 774 | WP_003433498.1 | Rha family transcriptional regulator | - |
| K2218_RS12735 (K2218_12715) | 2726314..2726529 | - | 216 | WP_003433496.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS12740 (K2218_12720) | 2726710..2727255 | + | 546 | WP_003433494.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS12745 (K2218_12725) | 2727279..2728868 | + | 1590 | WP_003429805.1 | SIR2 family protein | - |
| K2218_RS12750 (K2218_12730) | 2729131..2729637 | + | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K2218_RS12755 (K2218_12735) | 2729877..2731007 | + | 1131 | WP_003433492.1 | site-specific integrase | - |
| K2218_RS12760 (K2218_12740) | 2731365..2733053 | - | 1689 | WP_003429802.1 | biosynthetic-type acetolactate synthase large subunit | - |
| K2218_RS12765 (K2218_12745) | 2733106..2734152 | - | 1047 | WP_256008780.1 | ketol-acid reductoisomerase | - |
| K2218_RS12770 (K2218_12750) | 2734405..2734644 | - | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| K2218_RS12775 (K2218_12755) | 2735174..2735935 | - | 762 | WP_003429799.1 | SprT family zinc-dependent metalloprotease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|