MGE detailed information
MGE type: Prophage MGE length: 58305 bp
Accession: NZ_CP011847 Location: 3290882..3349186 Organism: Clostridioides difficile strain DSM 27639 Replicon: chromosome
Accession: NZ_CP011847 Location: 3290882..3349186 Organism: Clostridioides difficile strain DSM 27639 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27639_RS15490 () | 3286348..3287661 | - | 1314 | WP_003439696.1 | PTS sugar transporter subunit IIC | - |
| CDIF27639_RS15495 () | 3287683..3287994 | - | 312 | WP_003422688.1 | PTS sugar transporter subunit IIB | - |
| CDIF27639_RS15500 () | 3288194..3288898 | - | 705 | WP_003426754.1 | GntR family transcriptional regulator | - |
| CDIF27639_RS15505 () | 3288989..3290350 | - | 1362 | WP_011861729.1 | MATE family efflux transporter | - |
| CDIF27639_RS15510 () | 3290849..3292003 | + | 1155 | WP_003439713.1 | GGDEF domain-containing protein | - |
| CDIF27639_RS15515 () | 3292084..3293802 | - | 1719 | WP_011861730.1 | putative 2-aminoethylphosphonate ABC transporter permease subunit | - |
| CDIF27639_RS15520 () | 3293807..3294688 | - | 882 | Protein_2904 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| - () | 3295190..3295336 | + | 147 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3295190..3295340 | + | 151 | NuclAT_1 | - | - |
| CDIF27639_RS15525 () | 3295262..3295405 | - | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| CDIF27639_RS15530 () | 3295663..3295851 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF27639_RS15535 () | 3296098..3296802 | - | 705 | WP_011861732.1 | hypothetical protein | - |
| CDIF27639_RS15540 () | 3296804..3297235 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CDIF27639_RS15545 () | 3297253..3297816 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| CDIF27639_RS15550 () | 3298362..3298658 | - | 297 | WP_011861049.1 | hypothetical protein | - |
| CDIF27639_RS15555 () | 3298675..3299490 | - | 816 | WP_021362018.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF27639_RS15560 () | 3299487..3299747 | - | 261 | WP_011861047.1 | phage holin family protein | - |
| CDIF27639_RS15565 () | 3299766..3299996 | - | 231 | WP_021362019.1 | hemolysin XhlA family protein | - |
| CDIF27639_RS20220 () | 3300035..3300205 | - | 171 | WP_021362020.1 | hypothetical protein | - |
| CDIF27639_RS15570 () | 3300217..3300564 | - | 348 | WP_021362021.1 | hypothetical protein | - |
| CDIF27639_RS15575 () | 3300850..3302247 | - | 1398 | Protein_2916 | hypothetical protein | - |
| CDIF27639_RS15580 () | 3302256..3303059 | - | 804 | WP_011861042.1 | phage tail protein | - |
| CDIF27639_RS15585 () | 3303071..3303688 | - | 618 | WP_021362023.1 | YmfQ family protein | - |
| CDIF27639_RS15590 () | 3303681..3304727 | - | 1047 | WP_032519285.1 | baseplate J/gp47 family protein | - |
| CDIF27639_RS15595 () | 3304728..3305147 | - | 420 | WP_021362025.1 | DUF2634 domain-containing protein | - |
| CDIF27639_RS15600 () | 3305152..3305412 | - | 261 | WP_021362026.1 | DUF2577 domain-containing protein | - |
| CDIF27639_RS15605 () | 3305426..3307318 | - | 1893 | WP_021362027.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF27639_RS15610 () | 3307311..3308012 | - | 702 | WP_021362028.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF27639_RS15615 () | 3308028..3310385 | - | 2358 | WP_021362029.1 | tape measure protein | - |
| CDIF27639_RS15620 () | 3310452..3311234 | - | 783 | WP_021362030.1 | SHOCT domain-containing protein | - |
| CDIF27639_RS15625 () | 3311572..3311766 | - | 195 | WP_021362031.1 | hypothetical protein | - |
| CDIF27639_RS20225 () | 3312187..3312363 | - | 177 | WP_021388922.1 | hypothetical protein | - |
| CDIF27639_RS15630 () | 3312420..3313226 | - | 807 | WP_021361719.1 | hypothetical protein | - |
| CDIF27639_RS15635 () | 3313352..3313522 | - | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| CDIF27639_RS20230 () | 3314315..3314491 | - | 177 | WP_021388791.1 | hypothetical protein | - |
| CDIF27639_RS15640 () | 3314546..3315412 | - | 867 | WP_095908768.1 | phage repressor protein | - |
| CDIF27639_RS15645 () | 3315531..3315719 | - | 189 | WP_003429858.1 | hypothetical protein | - |
| - () | 3317195..3317334 | + | 140 | NuclAT_5 | - | Antitoxin Detail |
| - () | 3317195..3317334 | + | 140 | NuclAT_6 | - | Antitoxin Detail |
| CDIF27639_RS20235 () | 3317254..3317415 | - | 162 | WP_009901465.1 | hypothetical protein | Toxin Detail |
| CDIF27639_RS15655 () | 3317736..3318176 | - | 441 | WP_021362035.1 | phage XkdN-like family protein | - |
| CDIF27639_RS15660 () | 3318181..3318438 | - | 258 | WP_021362036.1 | hypothetical protein | - |
| CDIF27639_RS15665 () | 3318492..3318962 | - | 471 | WP_021362037.1 | phage tail tube protein | - |
| CDIF27639_RS15670 () | 3318987..3320297 | - | 1311 | WP_021362038.1 | phage tail sheath family protein | - |
| CDIF27639_RS15675 () | 3320298..3320474 | - | 177 | WP_009901506.1 | hypothetical protein | - |
| CDIF27639_RS15680 () | 3320467..3320904 | - | 438 | WP_009901504.1 | hypothetical protein | - |
| CDIF27639_RS15685 () | 3320897..3321322 | - | 426 | WP_021362039.1 | HK97 gp10 family phage protein | - |
| CDIF27639_RS15690 () | 3321322..3321669 | - | 348 | WP_021362040.1 | hypothetical protein | - |
| CDIF27639_RS15695 () | 3321669..3322013 | - | 345 | WP_021362041.1 | phage head-tail connector protein | - |
| CDIF27639_RS15700 () | 3322024..3323043 | - | 1020 | WP_021362042.1 | major capsid protein | - |
| CDIF27639_RS15705 () | 3323055..3323435 | - | 381 | WP_021360962.1 | hypothetical protein | - |
| CDIF27639_RS15710 () | 3323451..3324044 | - | 594 | WP_050585899.1 | phage scaffolding protein | - |
| CDIF27639_RS15715 () | 3324068..3324262 | - | 195 | WP_021362044.1 | hypothetical protein | - |
| CDIF27639_RS15720 () | 3324334..3324495 | - | 162 | WP_021360965.1 | cysteine-rich CPCC family protein | - |
| CDIF27639_RS15725 () | 3324498..3325859 | - | 1362 | WP_021362045.1 | minor capsid protein | - |
| CDIF27639_RS15730 () | 3325849..3327252 | - | 1404 | WP_021362046.1 | phage portal protein | - |
| CDIF27639_RS15735 () | 3327257..3328486 | - | 1230 | WP_021362047.1 | PBSX family phage terminase large subunit | - |
| CDIF27639_RS15740 () | 3328479..3329159 | - | 681 | WP_021362048.1 | ATPase subunit of terminase | - |
| CDIF27639_RS20155 () | 3329219..3331294 | - | 2076 | WP_157958750.1 | hypothetical protein | - |
| CDIF27639_RS15750 () | 3331392..3332069 | - | 678 | WP_015994390.1 | Bro-N domain-containing protein | - |
| CDIF27639_RS15755 () | 3332633..3333139 | - | 507 | WP_021362050.1 | hypothetical protein | - |
| CDIF27639_RS15760 () | 3333244..3333486 | - | 243 | WP_032508095.1 | hypothetical protein | - |
| CDIF27639_RS15765 () | 3333443..3333886 | - | 444 | WP_021362051.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF27639_RS15770 () | 3333909..3334715 | - | 807 | WP_011861019.1 | DNA adenine methylase | - |
| CDIF27639_RS15780 () | 3334844..3335083 | - | 240 | WP_015981545.1 | hypothetical protein | - |
| CDIF27639_RS15785 () | 3335097..3335282 | - | 186 | WP_011861016.1 | hypothetical protein | - |
| CDIF27639_RS15790 () | 3335361..3335828 | - | 468 | WP_011861015.1 | hypothetical protein | - |
| CDIF27639_RS15795 () | 3335831..3336202 | - | 372 | WP_011861014.1 | hypothetical protein | - |
| CDIF27639_RS15800 () | 3336195..3336368 | - | 174 | WP_011861013.1 | hypothetical protein | - |
| CDIF27639_RS15805 () | 3336365..3337090 | - | 726 | WP_011861012.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CDIF27639_RS15810 () | 3337099..3338094 | - | 996 | WP_011861011.1 | nucleoid-associated protein | - |
| CDIF27639_RS15815 () | 3338106..3338315 | - | 210 | WP_011861010.1 | hypothetical protein | - |
| CDIF27639_RS15820 () | 3338395..3339468 | - | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CDIF27639_RS15825 () | 3339564..3339839 | - | 276 | WP_011861008.1 | hypothetical protein | - |
| CDIF27639_RS15830 () | 3339939..3340274 | - | 336 | WP_011861007.1 | hypothetical protein | - |
| CDIF27639_RS15840 () | 3340392..3340565 | - | 174 | WP_011861005.1 | DUF3797 domain-containing protein | - |
| CDIF27639_RS15845 () | 3340562..3340720 | - | 159 | WP_011861004.1 | hypothetical protein | - |
| CDIF27639_RS15850 () | 3340695..3340841 | - | 147 | WP_011861003.1 | hypothetical protein | - |
| CDIF27639_RS15855 () | 3340825..3341205 | - | 381 | WP_021362053.1 | NUMOD1 domain protein | - |
| CDIF27639_RS15860 () | 3341209..3341574 | - | 366 | WP_021398171.1 | hypothetical protein | - |
| CDIF27639_RS15865 () | 3341571..3341834 | - | 264 | WP_011861747.1 | hypothetical protein | - |
| CDIF27639_RS15870 () | 3341908..3342324 | - | 417 | WP_011861748.1 | single-stranded DNA-binding protein | - |
| CDIF27639_RS15875 () | 3342340..3342513 | - | 174 | WP_011861749.1 | resolvase | - |
| CDIF27639_RS15880 () | 3342573..3343523 | - | 951 | WP_021362054.1 | DnaD domain protein | - |
| CDIF27639_RS15885 () | 3343532..3344122 | - | 591 | WP_011861751.1 | ERF family protein | - |
| CDIF27639_RS15890 () | 3344132..3344641 | - | 510 | WP_011861752.1 | siphovirus Gp157 family protein | - |
| CDIF27639_RS15895 () | 3344727..3345044 | - | 318 | WP_011861753.1 | hypothetical protein | - |
| CDIF27639_RS15900 () | 3345144..3345371 | - | 228 | WP_021391119.1 | hypothetical protein | - |
| CDIF27639_RS15905 () | 3345346..3345534 | - | 189 | WP_011861755.1 | hypothetical protein | - |
| CDIF27639_RS15910 () | 3345600..3346394 | - | 795 | WP_011861756.1 | ORF6N domain-containing protein | - |
| CDIF27639_RS15915 () | 3346442..3346663 | - | 222 | WP_011861757.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27639_RS15920 () | 3346817..3347272 | + | 456 | WP_011861758.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27639_RS15925 () | 3347290..3347763 | + | 474 | WP_011861759.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF27639_RS15930 () | 3347828..3349186 | + | 1359 | WP_011861760.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CDIF27639_RS15935 () | 3349209..3349325 | - | 117 | Protein_2988 | putative 2-aminoethylphosphonate ABC transporter ATP-binding protein | - |
| CDIF27639_RS15940 () | 3349421..3350470 | - | 1050 | WP_011861761.1 | putative 2-aminoethylphosphonate ABC transporter substrate-binding protein | - |
| CDIF27639_RS15945 () | 3350747..3351415 | - | 669 | WP_009891221.1 | V-type ATP synthase subunit D | - |
| CDIF27639_RS15950 () | 3351421..3352794 | - | 1374 | WP_003422669.1 | V-type ATP synthase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|