MGE detailed information
MGE type: Prophage MGE length: 91251 bp
Accession: NZ_CP021319 Location: 2030716..2121966 Organism: Clostridioides difficile strain DSM 101085 Replicon: chromosome
Accession: NZ_CP021319 Location: 2030716..2121966 Organism: Clostridioides difficile strain DSM 101085 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF101085_RS09610 () | 2026222..2027142 | + | 921 | WP_003424149.1 | PhzF family isomerase | - |
| CDIF101085_RS09615 () | 2027367..2027978 | + | 612 | WP_003424150.1 | CoA pyrophosphatase | - |
| CDIF101085_RS09620 () | 2028283..2028621 | + | 339 | WP_009905652.1 | DUF3784 domain-containing protein | - |
| CDIF101085_RS09625 () | 2029029..2030465 | - | 1437 | WP_003424153.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| CDIF101085_RS09630 () | 2030716..2032152 | - | 1437 | WP_009905653.1 | hypothetical protein | VF |
| CDIF101085_RS09635 () | 2032981..2033532 | - | 552 | WP_003424155.1 | tryptophan transporter | - |
| CDIF101085_RS09640 () | 2034376..2034783 | - | 408 | WP_029158138.1 | hypothetical protein | - |
| CDIF101085_RS09645 () | 2035121..2035606 | - | 486 | WP_009905654.1 | SH3 domain-containing protein | - |
| CDIF101085_RS09650 () | 2036132..2036470 | - | 339 | WP_003424159.1 | hypothetical protein | - |
| CDIF101085_RS09655 () | 2036457..2036684 | - | 228 | WP_003424160.1 | helix-turn-helix domain-containing protein | - |
| CDIF101085_RS09660 () | 2037021..2037257 | + | 237 | WP_003424162.1 | hypothetical protein | - |
| CDIF101085_RS09665 () | 2037534..2037818 | - | 285 | WP_003424163.1 | hypothetical protein | - |
| CDIF101085_RS09670 () | 2038141..2038398 | - | 258 | WP_003424164.1 | hypothetical protein | - |
| CDIF101085_RS09675 () | 2038537..2038908 | - | 372 | WP_003424165.1 | hypothetical protein | - |
| CDIF101085_RS09680 () | 2039351..2039923 | - | 573 | WP_003424166.1 | hypothetical protein | - |
| CDIF101085_RS09685 () | 2040909..2041103 | - | 195 | WP_003424168.1 | hypothetical protein | - |
| CDIF101085_RS09690 () | 2041640..2042020 | - | 381 | WP_003424180.1 | hypothetical protein | - |
| CDIF101085_RS09695 () | 2042013..2042270 | - | 258 | WP_003424182.1 | hypothetical protein | - |
| CDIF101085_RS09700 () | 2042257..2042490 | - | 234 | WP_003424184.1 | hypothetical protein | - |
| CDIF101085_RS09705 () | 2042678..2042866 | + | 189 | WP_003424185.1 | helix-turn-helix transcriptional regulator | - |
| - () | 2044901..2045001 | + | 101 | NuclAT_0 | - | Antitoxin Detail |
| CDIF101085_RS09710 () | 2044945..2045097 | - | 153 | WP_003424190.1 | hypothetical protein | Toxin Detail |
| CDIF101085_RS09715 () | 2045617..2045859 | + | 243 | WP_003424191.1 | hypothetical protein | - |
| CDIF101085_RS09720 () | 2045925..2046470 | + | 546 | WP_077699404.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CDIF101085_RS09725 () | 2047015..2047860 | + | 846 | WP_003424194.1 | DUF4878 domain-containing protein | - |
| CDIF101085_RS09730 () | 2048084..2048248 | - | 165 | WP_003424195.1 | hypothetical protein | - |
| CDIF101085_RS09735 () | 2048780..2049111 | - | 332 | Protein_1834 | carboxymuconolactone decarboxylase family protein | - |
| CDIF101085_RS09740 () | 2049371..2049687 | - | 317 | Protein_1835 | SdpI family protein | - |
| CDIF101085_RS09745 () | 2049719..2050102 | - | 384 | WP_021372058.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF101085_RS09750 () | 2050385..2050561 | - | 177 | WP_022620917.1 | hypothetical protein | - |
| CDIF101085_RS09755 () | 2050668..2050874 | - | 207 | WP_021372097.1 | helix-turn-helix domain-containing protein | - |
| CDIF101085_RS09760 () | 2051043..2051486 | + | 444 | WP_107600189.1 | hypothetical protein | - |
| CDIF101085_RS09765 () | 2051499..2051699 | + | 201 | WP_196612413.1 | hypothetical protein | - |
| CDIF101085_RS09770 () | 2052058..2052528 | - | 471 | WP_021395572.1 | hypothetical protein | - |
| CDIF101085_RS09775 () | 2052602..2052784 | + | 183 | WP_021395571.1 | hypothetical protein | - |
| CDIF101085_RS09780 () | 2052855..2053670 | - | 816 | WP_022615916.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF101085_RS09785 () | 2053670..2053927 | - | 258 | WP_107600190.1 | phage holin family protein | - |
| CDIF101085_RS09790 () | 2053947..2054177 | - | 231 | WP_009898415.1 | hemolysin XhlA family protein | - |
| CDIF101085_RS09795 () | 2054209..2054346 | - | 138 | WP_021435015.1 | XkdX family protein | - |
| CDIF101085_RS09800 () | 2054347..2054670 | - | 324 | WP_021435016.1 | hypothetical protein | - |
| CDIF101085_RS09805 () | 2054671..2055711 | - | 1041 | WP_022616315.1 | hypothetical protein | - |
| CDIF101085_RS09810 () | 2055724..2056635 | - | 912 | WP_021435018.1 | phage tail protein | - |
| CDIF101085_RS09815 () | 2056652..2057260 | - | 609 | WP_022616285.1 | DUF2313 domain-containing protein | - |
| CDIF101085_RS09820 () | 2057257..2058309 | - | 1053 | WP_022616286.1 | baseplate J/gp47 family protein | - |
| CDIF101085_RS09825 () | 2058302..2058730 | - | 429 | WP_107600242.1 | DUF2634 domain-containing protein | - |
| CDIF101085_RS09830 () | 2058730..2059056 | - | 327 | WP_107600241.1 | DUF2577 family protein | - |
| CDIF101085_RS09835 () | 2059072..2060559 | - | 1488 | WP_107600240.1 | hypothetical protein | VF |
| CDIF101085_RS09840 () | 2060861..2061058 | + | 198 | WP_021435099.1 | hypothetical protein | - |
| CDIF101085_RS09845 () | 2061059..2061316 | - | 258 | WP_050585499.1 | hypothetical protein | - |
| CDIF101085_RS09850 () | 2061349..2061984 | - | 636 | WP_022616328.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF101085_RS09855 () | 2063119..2063688 | - | 570 | WP_107600245.1 | SHOCT domain-containing protein | - |
| CDIF101085_RS09860 () | 2063952..2066807 | - | 2856 | WP_022616293.1 | phage tail tape measure protein | - |
| CDIF101085_RS09865 () | 2066811..2066948 | - | 138 | WP_165488066.1 | hypothetical protein | - |
| CDIF101085_RS09870 () | 2066984..2067451 | - | 468 | WP_021435105.1 | phage XkdN-like family protein | - |
| CDIF101085_RS09875 () | 2067477..2067908 | - | 432 | WP_021415327.1 | phage tail tube protein | - |
| CDIF101085_RS09880 () | 2067924..2068994 | - | 1071 | WP_022616295.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF101085_RS09885 () | 2068995..2069447 | - | 453 | WP_032554221.1 | hypothetical protein | - |
| CDIF101085_RS09890 () | 2069458..2069868 | - | 411 | WP_022616297.1 | HK97 gp10 family phage protein | - |
| CDIF101085_RS09895 () | 2069869..2070219 | - | 351 | WP_022616298.1 | hypothetical protein | - |
| CDIF101085_RS09900 () | 2070221..2070565 | - | 345 | WP_021391018.1 | phage head-tail connector protein | - |
| CDIF101085_RS09905 () | 2070594..2070815 | - | 222 | WP_022616299.1 | Rho termination factor N-terminal domain-containing protein | - |
| CDIF101085_RS09910 () | 2070828..2071766 | - | 939 | WP_021391003.1 | hypothetical protein | - |
| CDIF101085_RS09915 () | 2071790..2072386 | - | 597 | WP_022616300.1 | phage scaffolding protein | - |
| CDIF101085_RS09920 () | 2072686..2072883 | - | 198 | WP_021415317.1 | hypothetical protein | - |
| CDIF101085_RS09925 () | 2072876..2074294 | - | 1419 | WP_022616301.1 | minor capsid protein | - |
| CDIF101085_RS09930 () | 2074307..2075662 | - | 1356 | WP_022616302.1 | phage portal protein | - |
| CDIF101085_RS09935 () | 2075679..2077082 | - | 1404 | WP_032554229.1 | phage terminase large subunit | - |
| CDIF101085_RS09940 () | 2077078..2077833 | - | 756 | WP_022616304.1 | hypothetical protein | - |
| CDIF101085_RS09945 () | 2077871..2078509 | - | 639 | WP_022616305.1 | queuosine precursor transporter | - |
| CDIF101085_RS09950 () | 2078506..2079273 | - | 768 | WP_022616306.1 | hypothetical protein | - |
| CDIF101085_RS09955 () | 2079276..2079767 | - | 492 | WP_022616307.1 | ParB N-terminal domain-containing protein | - |
| CDIF101085_RS09960 () | 2079814..2080011 | - | 198 | WP_107600238.1 | hypothetical protein | - |
| CDIF101085_RS09965 () | 2080449..2080931 | - | 483 | WP_021359679.1 | hypothetical protein | - |
| CDIF101085_RS09970 () | 2081084..2081905 | - | 822 | WP_107600237.1 | ORF6C domain-containing protein | - |
| CDIF101085_RS09975 () | 2082006..2082413 | - | 408 | WP_022616334.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF101085_RS09980 () | 2082403..2082903 | - | 501 | WP_196612414.1 | hypothetical protein | - |
| CDIF101085_RS09985 () | 2082944..2083285 | - | 342 | WP_196612415.1 | peptide chain release factor-like protein | - |
| CDIF101085_RS09990 () | 2083370..2083537 | - | 168 | WP_107600235.1 | hypothetical protein | - |
| CDIF101085_RS09995 () | 2083546..2084550 | - | 1005 | WP_107600234.1 | nucleoid-associated protein | - |
| CDIF101085_RS10000 () | 2084562..2084771 | - | 210 | WP_022615938.1 | hypothetical protein | - |
| CDIF101085_RS10005 () | 2084880..2085140 | - | 261 | WP_021415861.1 | hypothetical protein | - |
| CDIF101085_RS10010 () | 2085273..2085437 | - | 165 | WP_021424476.1 | hypothetical protein | - |
| CDIF101085_RS10015 () | 2085430..2085618 | - | 189 | WP_021424475.1 | hypothetical protein | - |
| CDIF101085_RS10020 () | 2085618..2085941 | - | 324 | WP_022615937.1 | hypothetical protein | - |
| CDIF101085_RS10025 () | 2085960..2086148 | - | 189 | WP_032553793.1 | hypothetical protein | - |
| CDIF101085_RS10030 () | 2086126..2086266 | - | 141 | WP_022615935.1 | hypothetical protein | - |
| CDIF101085_RS10035 () | 2086343..2086699 | - | 357 | WP_022615934.1 | hypothetical protein | - |
| CDIF101085_RS10040 () | 2086686..2086835 | - | 150 | WP_022615933.1 | hypothetical protein | - |
| CDIF101085_RS10045 () | 2086804..2087157 | - | 354 | WP_022615932.1 | hypothetical protein | - |
| CDIF101085_RS10050 () | 2087171..2087428 | - | 258 | WP_022615931.1 | hypothetical protein | - |
| CDIF101085_RS10055 () | 2087446..2087667 | - | 222 | WP_022615930.1 | hypothetical protein | - |
| CDIF101085_RS10060 () | 2087657..2087833 | - | 177 | WP_022615929.1 | hypothetical protein | - |
| CDIF101085_RS10065 () | 2087853..2088467 | - | 615 | WP_022615928.1 | hypothetical protein | - |
| CDIF101085_RS10070 () | 2088512..2089279 | - | 768 | WP_107600243.1 | DnaD domain protein | - |
| CDIF101085_RS10075 () | 2089438..2090049 | - | 612 | WP_074176680.1 | ERF family protein | - |
| CDIF101085_RS10080 () | 2090059..2090568 | - | 510 | WP_022616289.1 | siphovirus Gp157 family protein | - |
| CDIF101085_RS10085 () | 2090651..2090893 | - | 243 | WP_107600233.1 | hypothetical protein | - |
| CDIF101085_RS10090 () | 2090992..2091219 | - | 228 | WP_022616048.1 | hypothetical protein | - |
| CDIF101085_RS10095 () | 2091232..2091420 | - | 189 | WP_032553927.1 | hypothetical protein | - |
| CDIF101085_RS10100 () | 2091522..2091731 | - | 210 | WP_021371922.1 | hypothetical protein | - |
| CDIF101085_RS10105 () | 2091770..2091967 | - | 198 | WP_022616050.1 | helix-turn-helix transcriptional regulator | - |
| CDIF101085_RS10110 () | 2092197..2092457 | - | 261 | WP_021371923.1 | hypothetical protein | - |
| CDIF101085_RS10115 () | 2092514..2093293 | - | 780 | Protein_1910 | phage antirepressor KilAC domain-containing protein | - |
| CDIF101085_RS10120 () | 2093286..2093453 | - | 168 | WP_022616052.1 | Arc family DNA-binding protein | - |
| CDIF101085_RS10125 () | 2093587..2093766 | + | 180 | WP_032542077.1 | hypothetical protein | - |
| CDIF101085_RS10130 () | 2094108..2094320 | - | 213 | WP_074176682.1 | helix-turn-helix transcriptional regulator | - |
| CDIF101085_RS10135 () | 2094486..2094887 | + | 402 | WP_022616053.1 | helix-turn-helix domain-containing protein | - |
| CDIF101085_RS10140 () | 2095321..2095536 | + | 216 | WP_022616054.1 | helix-turn-helix domain-containing protein | - |
| CDIF101085_RS10145 () | 2095613..2096659 | + | 1047 | WP_032553930.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CDIF101085_RS10150 () | 2096733..2097170 | - | 438 | Protein_1917 | DUF1648 domain-containing protein | - |
| CDIF101085_RS10155 () | 2097151..2097444 | - | 294 | WP_009889969.1 | autorepressor SdpR family transcription factor | - |
| CDIF101085_RS10160 () | 2097838..2097897 | + | 60 | WP_071585685.1 | hypothetical protein | - |
| CDIF101085_RS10165 () | 2098413..2099165 | - | 753 | WP_022616057.1 | TSUP family transporter | - |
| CDIF101085_RS10170 () | 2099226..2100881 | - | 1656 | WP_003424202.1 | PocR ligand-binding domain-containing protein | - |
| CDIF101085_RS10175 () | 2100893..2101255 | - | 363 | WP_009905671.1 | Transcriptional regulator MntR | VF |
| CDIF101085_RS10180 () | 2101570..2101938 | - | 369 | WP_003424204.1 | IS607 family transposase ISCbo6 | Transposase |
| CDIF101085_RS10185 () | 2102087..2102881 | + | 795 | WP_009905672.1 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | - |
| CDIF101085_RS10190 () | 2103034..2103462 | - | 429 | WP_003424207.1 | flavodoxin | - |
| CDIF101085_RS10195 () | 2103976..2104914 | - | 939 | WP_003424208.1 | hypothetical protein | VF |
| CDIF101085_RS10200 () | 2105428..2106240 | - | 813 | WP_022616058.1 | alpha/beta hydrolase | - |
| CDIF101085_RS10205 () | 2106269..2106895 | - | 627 | WP_032553928.1 | TetR/AcrR family transcriptional regulator | - |
| CDIF101085_RS10210 () | 2107236..2108891 | - | 1656 | WP_022616060.1 | dihydroxy-acid dehydratase | - |
| CDIF101085_RS10215 () | 2109213..2109512 | - | 300 | WP_003424216.1 | hypothetical protein | - |
| CDIF101085_RS10220 () | 2109769..2110449 | + | 681 | WP_003424218.1 | VanZ family protein | - |
| CDIF101085_RS10225 () | 2110559..2110816 | - | 258 | WP_003424219.1 | hypothetical protein | - |
| CDIF101085_RS10230 () | 2111360..2111731 | + | 372 | WP_003424221.1 | helix-turn-helix domain-containing protein | - |
| CDIF101085_RS10235 () | 2111728..2111868 | - | 141 | WP_009889993.1 | hypothetical protein | - |
| CDIF101085_RS10240 () | 2112534..2113430 | - | 897 | WP_003424224.1 | AraC family transcriptional regulator | - |
| CDIF101085_RS10245 () | 2113572..2114999 | + | 1428 | WP_009905688.1 | MFS transporter | - |
| CDIF101085_RS10250 () | 2115176..2117770 | - | 2595 | WP_003424228.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | VF |
| CDIF101085_RS10255 () | 2117807..2118403 | - | 597 | WP_003424230.1 | hypothetical protein | - |
| CDIF101085_RS10260 () | 2118420..2118824 | - | 405 | WP_003424231.1 | replication/maintenance protein RepL | - |
| CDIF101085_RS10265 () | 2119191..2119565 | + | 375 | WP_003424232.1 | GntR family transcriptional regulator | - |
| CDIF101085_RS10270 () | 2119562..2120425 | + | 864 | WP_003424233.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CDIF101085_RS10275 () | 2120425..2121063 | + | 639 | WP_003424234.1 | ABC-2 transporter permease | - |
| CDIF101085_RS10280 () | 2121553..2121966 | + | 414 | WP_009905693.1 | GNAT family N-acetyltransferase | - |
| CDIF101085_RS10285 () | 2122158..2123375 | + | 1218 | WP_022616061.1 | M20 family metallo-hydrolase | - |
| CDIF101085_RS10290 () | 2123537..2124235 | + | 699 | WP_003424237.1 | amino acid racemase | - |
| CDIF101085_RS10295 () | 2124429..2125046 | - | 618 | WP_022616062.1 | DUF4878 domain-containing protein | - |
| CDIF101085_RS10300 () | 2125173..2126195 | - | 1023 | WP_003424241.1 | ornithine carbamoyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|