MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP026592 Location: 1684239..1750676 Organism: Clostridioides difficile strain CD-10-00484 Replicon: chromosome
Accession: NZ_CP026592 Location: 1684239..1750676 Organism: Clostridioides difficile strain CD-10-00484 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3W74_RS08090 () | 1679345..1680106 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3W74_RS08095 () | 1680636..1680875 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3W74_RS08100 () | 1681145..1682140 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3W74_RS08105 () | 1682193..1683881 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3W74_RS08110 () | 1684239..1685369 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| C3W74_RS08115 () | 1685448..1686155 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3W74_RS08120 () | 1686168..1687037 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3W74_RS08125 () | 1687657..1688163 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3W74_RS08130 () | 1688239..1688787 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3W74_RS08135 () | 1688799..1689140 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3W74_RS08140 () | 1689317..1689520 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3W74_RS08145 () | 1689568..1690377 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3W74_RS08150 () | 1690424..1690633 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3W74_RS08155 () | 1690643..1691017 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3W74_RS08160 () | 1691093..1691290 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3W74_RS08165 () | 1691321..1691713 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3W74_RS19235 () | 1691694..1691843 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3W74_RS08170 () | 1691914..1692351 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3W74_RS08175 () | 1692363..1693529 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3W74_RS08180 () | 1693544..1693879 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3W74_RS08185 () | 1693932..1694504 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3W74_RS08190 () | 1694527..1695099 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3W74_RS08195 () | 1695099..1697057 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3W74_RS08200 () | 1697069..1699486 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3W74_RS08205 () | 1699768..1700094 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3W74_RS08210 () | 1700043..1701413 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3W74_RS19345 () | 1701437..1701574 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3W74_RS08215 () | 1701567..1702046 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3W74_RS08220 () | 1702329..1702878 | + | 550 | Protein_1487 | Bro-N domain-containing protein | - |
| C3W74_RS08225 () | 1703073..1704047 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3W74_RS19240 () | 1704068..1704577 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3W74_RS08240 () | 1704647..1705339 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3W74_RS08245 () | 1705317..1706570 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3W74_RS08250 () | 1706576..1708018 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3W74_RS08255 () | 1708008..1709543 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3W74_RS08260 () | 1709545..1709793 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3W74_RS08265 () | 1709861..1710424 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3W74_RS08270 () | 1710436..1711326 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3W74_RS08275 () | 1711345..1711578 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3W74_RS08280 () | 1711588..1711989 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3W74_RS08285 () | 1711983..1712330 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3W74_RS08290 () | 1712330..1712620 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3W74_RS08295 () | 1712730..1713536 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3W74_RS08300 () | 1713885..1714322 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3W74_RS08305 () | 1714315..1714491 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3W74_RS08310 () | 1714492..1715802 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3W74_RS08315 () | 1715819..1716289 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3W74_RS08320 () | 1716348..1717175 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3W74_RS08325 () | 1717247..1717687 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3W74_RS08335 () | 1718028..1718189 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718109..1718248 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718109..1718248 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1718593..1718641 | - | 49 | NuclAT_4 | - | - |
| - () | 1718593..1718641 | - | 49 | NuclAT_5 | - | - |
| C3W74_RS08340 () | 1719526..1719714 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3W74_RS08345 () | 1719833..1720699 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3W74_RS08355 () | 1721564..1722091 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3W74_RS08360 () | 1722229..1722996 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3W74_RS08365 () | 1723062..1725434 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3W74_RS08370 () | 1725451..1726140 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3W74_RS08375 () | 1726133..1728025 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| C3W74_RS08380 () | 1728039..1728299 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3W74_RS08385 () | 1728304..1728723 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3W74_RS08390 () | 1728724..1729773 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3W74_RS08395 () | 1729766..1730383 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3W74_RS08400 () | 1730395..1731420 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3W74_RS08405 () | 1731437..1732963 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3W74_RS08410 () | 1732978..1733271 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3W74_RS08415 () | 1733271..1733453 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3W74_RS08420 () | 1733487..1734053 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3W74_RS08425 () | 1734084..1734374 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3W74_RS08430 () | 1734378..1734635 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3W74_RS08435 () | 1734896..1735759 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3W74_RS08440 () | 1735838..1736650 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3W74_RS08445 () | 1736744..1739143 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| C3W74_RS08450 () | 1739184..1739369 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3W74_RS08455 () | 1740064..1740741 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3W74_RS08460 () | 1740915..1742951 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3W74_RS08465 () | 1743142..1743708 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3W74_RS08470 () | 1743992..1744519 | + | 528 | Protein_1534 | alpha/beta fold hydrolase | - |
| C3W74_RS08480 () | 1745151..1745258 | + | 108 | WP_009889455.1 | transposase | - |
| C3W74_RS08485 () | 1745260..1746377 | + | 1118 | Protein_1536 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3W74_RS08490 () | 1746442..1746903 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3W74_RS08495 () | 1747368..1748582 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3W74_RS08500 () | 1749002..1749523 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3W74_RS08505 () | 1749879..1750676 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3W74_RS08510 () | 1750786..1751376 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3W74_RS08515 () | 1751442..1753139 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3W74_RS08520 () | 1753353..1754192 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |