MGE detailed information
MGE type: Prophage MGE length: 15639 bp
Accession: NZ_LN614756 Location: 2615679..2631317 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Accession: NZ_LN614756 Location: 2615679..2631317 Organism: Clostridioides difficile strain 630Derm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630DERM_RS12370 () | 2610896..2611597 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CD630DERM_RS12375 () | 2611590..2611913 | + | 324 | WP_011861511.1 | AzlD domain-containing protein | - |
| CD630DERM_RS12380 () | 2612119..2614179 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CD630DERM_RS12390 () | 2614375..2615067 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CD630DERM_RS12395 () | 2615679..2616053 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630DERM_RS12400 () | 2616272..2616505 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CD630DERM_RS12405 () | 2616489..2616902 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CD630DERM_RS12410 () | 2616921..2617217 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CD630DERM_RS12415 () | 2617500..2617817 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CD630DERM_RS12420 () | 2617953..2618417 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CD630DERM_RS20990 () | 2618745..2618906 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CD630DERM_RS20280 () | 2618958..2619771 | - | 814 | Protein_2353 | toxin Bro | - |
| CD630DERM_RS20995 () | 2619891..2620043 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CD630DERM_RS12440 () | 2621452..2622375 | - | 924 | WP_011861517.1 | SHOCT domain-containing protein | - |
| - () | 2622519..2622648 | + | 130 | NuclAT_9 | - | Antitoxin Detail |
| CD630DERM_RS21000 () | 2622569..2622721 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CD630DERM_RS12450 () | 2622995..2623318 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CD630DERM_RS12455 () | 2623354..2623608 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CD630DERM_RS12460 () | 2624044..2624562 | - | 519 | Protein_2359 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CD630DERM_RS20695 () | 2624852..2625227 | - | 376 | Protein_2360 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630DERM_RS12470 () | 2625332..2625709 | - | 378 | WP_011861518.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630DERM_RS12475 () | 2626513..2627007 | + | 495 | WP_011861519.1 | Type II secretion system protein G | VF |
| CD630DERM_RS20700 () | 2627396..2627566 | + | 171 | WP_004454601.1 | hypothetical protein | - |
| CD630DERM_RS12485 () | 2628043..2628232 | - | 190 | Protein_2364 | IS3 family transposase ISEfa10 | Transposase |
| CD630DERM_RS12490 () | 2628394..2628744 | + | 351 | WP_011861520.1 | DUF3796 domain-containing protein | - |
| CD630DERM_RS12495 () | 2628746..2628946 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CD630DERM_RS21005 () | 2629269..2629445 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CD630DERM_RS12505 () | 2629670..2629870 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CD630DERM_RS12510 () | 2630505..2631317 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CD630DERM_RS12515 () | 2631327..2632118 | + | 792 | WP_011861521.1 | ABC transporter permease | - |
| CD630DERM_RS12520 () | 2632120..2632815 | + | 696 | WP_011861522.1 | ATP-binding cassette domain-containing protein | - |
| CD630DERM_RS12525 () | 2632802..2633533 | + | 732 | WP_009890514.1 | membrane protein | - |
| CD630DERM_RS12530 () | 2633847..2634647 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CD630DERM_RS12535 () | 2635187..2635903 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.002 |