MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP026591 Location: 1681063..1747500 Organism: Clostridioides difficile strain CD-17-01474 Replicon: chromosome
Accession: NZ_CP026591 Location: 1681063..1747500 Organism: Clostridioides difficile strain CD-17-01474 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3L34_RS08075 () | 1676168..1676929 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3L34_RS08080 () | 1677460..1677699 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3L34_RS08085 () | 1677969..1678964 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3L34_RS08090 () | 1679017..1680705 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3L34_RS08095 () | 1681063..1682193 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| C3L34_RS08100 () | 1682272..1682979 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3L34_RS08105 () | 1682992..1683861 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3L34_RS08110 () | 1684481..1684987 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3L34_RS08115 () | 1685063..1685611 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3L34_RS08120 () | 1685623..1685964 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3L34_RS08125 () | 1686141..1686344 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3L34_RS08130 () | 1686392..1687201 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3L34_RS08135 () | 1687248..1687457 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3L34_RS08140 () | 1687467..1687841 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3L34_RS08145 () | 1687917..1688114 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3L34_RS08150 () | 1688145..1688537 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3L34_RS19710 () | 1688518..1688667 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3L34_RS08155 () | 1688738..1689175 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3L34_RS08160 () | 1689187..1690353 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3L34_RS08165 () | 1690368..1690703 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3L34_RS08170 () | 1690756..1691328 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3L34_RS08175 () | 1691351..1691923 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3L34_RS08180 () | 1691923..1693881 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3L34_RS08185 () | 1693893..1696310 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3L34_RS08190 () | 1696592..1696918 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3L34_RS08195 () | 1696867..1698237 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3L34_RS19810 () | 1698261..1698398 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3L34_RS08200 () | 1698391..1698870 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3L34_RS08205 () | 1699153..1699702 | + | 550 | Protein_1482 | Bro-N domain-containing protein | - |
| C3L34_RS08210 () | 1699897..1700871 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3L34_RS19715 () | 1700892..1701401 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3L34_RS08225 () | 1701471..1702163 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3L34_RS08230 () | 1702141..1703394 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3L34_RS08235 () | 1703400..1704842 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3L34_RS08240 () | 1704832..1706367 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3L34_RS08245 () | 1706369..1706617 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3L34_RS08250 () | 1706685..1707248 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3L34_RS08255 () | 1707260..1708150 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3L34_RS08260 () | 1708169..1708402 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3L34_RS08265 () | 1708412..1708813 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3L34_RS08270 () | 1708807..1709154 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3L34_RS08275 () | 1709154..1709444 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3L34_RS08280 () | 1709554..1710360 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3L34_RS08285 () | 1710709..1711146 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3L34_RS08290 () | 1711139..1711315 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3L34_RS08295 () | 1711316..1712626 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3L34_RS08300 () | 1712643..1713113 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3L34_RS08305 () | 1713172..1713999 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3L34_RS08310 () | 1714071..1714511 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3L34_RS08320 () | 1714852..1715013 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1714933..1715072 | - | 140 | - | - | Antitoxin Detail |
| C3L34_RS08325 () | 1716350..1716538 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3L34_RS08330 () | 1716657..1717523 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3L34_RS08340 () | 1718388..1718915 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3L34_RS08345 () | 1719053..1719820 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3L34_RS08350 () | 1719886..1722258 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3L34_RS08355 () | 1722275..1722964 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3L34_RS08360 () | 1722957..1724849 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| C3L34_RS08365 () | 1724863..1725123 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3L34_RS08370 () | 1725128..1725547 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3L34_RS08375 () | 1725548..1726597 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3L34_RS08380 () | 1726590..1727207 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3L34_RS08385 () | 1727219..1728244 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3L34_RS08390 () | 1728261..1729787 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3L34_RS08395 () | 1729802..1730095 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3L34_RS08400 () | 1730095..1730277 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3L34_RS08405 () | 1730311..1730877 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3L34_RS08410 () | 1730908..1731198 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3L34_RS08415 () | 1731202..1731459 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3L34_RS08420 () | 1731720..1732583 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3L34_RS08425 () | 1732662..1733474 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3L34_RS08430 () | 1733568..1735967 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| C3L34_RS08435 () | 1736008..1736193 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3L34_RS08440 () | 1736888..1737565 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3L34_RS08445 () | 1737739..1739775 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3L34_RS08450 () | 1739966..1740532 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3L34_RS08455 () | 1740816..1741343 | + | 528 | Protein_1529 | alpha/beta fold hydrolase | - |
| C3L34_RS08465 () | 1741975..1742082 | + | 108 | WP_009889455.1 | transposase | - |
| C3L34_RS08470 () | 1742084..1743201 | + | 1118 | Protein_1531 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3L34_RS08475 () | 1743266..1743727 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3L34_RS08480 () | 1744192..1745406 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3L34_RS08485 () | 1745826..1746347 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3L34_RS08490 () | 1746703..1747500 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3L34_RS08495 () | 1747610..1748200 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3L34_RS08500 () | 1748266..1749963 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3L34_RS08505 () | 1750177..1751016 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |