MGE detailed information
MGE type: Prophage MGE length: 64423 bp
Accession: NZ_CP012312 Location: 1721930..1786352 Organism: Clostridioides difficile strain DSM 28670 Replicon: chromosome
Accession: NZ_CP012312 Location: 1721930..1786352 Organism: Clostridioides difficile strain DSM 28670 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28670_RS08440 () | 1717001..1717762 | + | 762 | WP_022617005.1 | M48 family metallopeptidase | - |
| CDIF28670_RS08445 () | 1718293..1718532 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF28670_RS08450 () | 1718836..1719831 | + | 996 | WP_074048058.1 | ketol-acid reductoisomerase | - |
| CDIF28670_RS08455 () | 1719884..1721572 | + | 1689 | WP_192881646.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF28670_RS08460 () | 1721930..1723060 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF28670_RS08465 () | 1723300..1723806 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28670_RS08470 () | 1723882..1724430 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDIF28670_RS20085 () | 1724442..1724732 | - | 291 | WP_199855622.1 | helix-turn-helix domain-containing protein | - |
| CDIF28670_RS20090 () | 1724826..1725053 | - | 228 | Protein_1548 | helix-turn-helix transcriptional regulator | - |
| CDIF28670_RS08480 () | 1725196..1725429 | + | 234 | WP_021396857.1 | putative HTH-type transcriptional regulator | VF |
| CDIF28670_RS08485 () | 1725634..1725813 | - | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| CDIF28670_RS19870 () | 1725890..1726027 | + | 138 | WP_009902579.1 | hypothetical protein | - |
| CDIF28670_RS19875 () | 1726038..1726262 | + | 225 | WP_133145987.1 | hypothetical protein | - |
| CDIF28670_RS19880 () | 1726446..1726616 | + | 171 | WP_009902584.1 | hypothetical protein | - |
| CDIF28670_RS08495 () | 1726619..1727422 | + | 804 | WP_038810633.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF28670_RS08500 () | 1727469..1727678 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF28670_RS08505 () | 1727688..1728062 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF28670_RS08510 () | 1728138..1728335 | + | 198 | WP_003433507.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28670_RS08515 () | 1728366..1728758 | + | 393 | WP_118712352.1 | helix-turn-helix domain-containing protein | - |
| CDIF28670_RS20000 () | 1728745..1728888 | + | 144 | WP_009888817.1 | hypothetical protein | - |
| CDIF28670_RS08520 () | 1728959..1729396 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF28670_RS08525 () | 1729408..1730574 | + | 1167 | WP_009902594.1 | DUF2800 domain-containing protein | - |
| CDIF28670_RS08530 () | 1730589..1730924 | + | 336 | WP_009904225.1 | hypothetical protein | - |
| CDIF28670_RS08535 () | 1730976..1731548 | + | 573 | WP_118712354.1 | RNA polymerase subunit sigma-70 | - |
| CDIF28670_RS08540 () | 1731571..1732143 | + | 573 | WP_009902596.1 | DUF2815 family protein | - |
| CDIF28670_RS08545 () | 1732143..1734101 | + | 1959 | WP_009904230.1 | DNA polymerase | - |
| CDIF28670_RS08550 () | 1734113..1736530 | + | 2418 | WP_070113258.1 | virulence-associated E family protein | - |
| CDIF28670_RS08555 () | 1736812..1737138 | + | 327 | WP_003429828.1 | VRR-NUC domain-containing protein | - |
| CDIF28670_RS08560 () | 1737087..1738457 | + | 1371 | WP_118712356.1 | DEAD/DEAH box helicase | - |
| CDIF28670_RS20005 () | 1738481..1738618 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDIF28670_RS08565 () | 1738611..1739090 | + | 480 | WP_003433526.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF28670_RS08570 () | 1739576..1739812 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDIF28670_RS08575 () | 1740115..1741089 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDIF28670_RS19885 () | 1741110..1741619 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF28670_RS08590 () | 1741690..1742382 | + | 693 | WP_003429835.1 | helix-turn-helix domain-containing protein | - |
| CDIF28670_RS08595 () | 1742360..1743613 | + | 1254 | WP_167653783.1 | PBSX family phage terminase large subunit | - |
| CDIF28670_RS08600 () | 1743619..1745058 | + | 1440 | WP_118712358.1 | phage portal protein | - |
| CDIF28670_RS08605 () | 1745048..1746445 | + | 1398 | WP_070116962.1 | minor capsid protein | - |
| CDIF28670_RS08610 () | 1746460..1746660 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF28670_RS08615 () | 1746726..1747289 | + | 564 | WP_009896620.1 | phage scaffolding protein | - |
| CDIF28670_RS08620 () | 1747301..1748200 | + | 900 | WP_070116963.1 | capsid protein | - |
| CDIF28670_RS08625 () | 1748200..1748433 | + | 234 | WP_070113070.1 | hypothetical protein | - |
| CDIF28670_RS08630 () | 1748443..1748844 | + | 402 | WP_021363493.1 | hypothetical protein | - |
| CDIF28670_RS08635 () | 1748838..1749185 | + | 348 | WP_070113072.1 | hypothetical protein | - |
| CDIF28670_RS08640 () | 1749185..1749610 | + | 426 | WP_038812299.1 | HK97 gp10 family phage protein | - |
| CDIF28670_RS08645 () | 1749603..1750040 | + | 438 | WP_003433544.1 | hypothetical protein | - |
| CDIF28670_RS08650 () | 1750033..1750209 | + | 177 | WP_070112848.1 | hypothetical protein | - |
| CDIF28670_RS08655 () | 1750210..1751520 | + | 1311 | WP_070116964.1 | phage tail sheath family protein | - |
| CDIF28670_RS08660 () | 1751537..1752007 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF28670_RS08665 () | 1752079..1752519 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF28670_RS08675 () | 1752860..1753021 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1752941..1753074 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1752941..1753074 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1753419..1753467 | - | 49 | NuclAT_4 | - | - |
| - () | 1753419..1753467 | - | 49 | NuclAT_6 | - | - |
| - () | 1754248..1754353 | - | 106 | NuclAT_3 | - | - |
| - () | 1754248..1754353 | - | 106 | NuclAT_5 | - | - |
| CDIF28670_RS08680 () | 1755137..1756018 | + | 882 | WP_118712360.1 | hypothetical protein | - |
| CDIF28670_RS08685 () | 1756089..1758377 | + | 2289 | WP_118712362.1 | tape measure protein | - |
| CDIF28670_RS08690 () | 1758393..1759085 | + | 693 | WP_118712364.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF28670_RS08695 () | 1759078..1760970 | + | 1893 | WP_118712366.1 | putative endopeptidase | VF |
| CDIF28670_RS08700 () | 1760984..1761244 | + | 261 | WP_065977983.1 | DUF2577 domain-containing protein | - |
| CDIF28670_RS08705 () | 1761249..1761668 | + | 420 | WP_021373355.1 | DUF2634 domain-containing protein | - |
| CDIF28670_RS08710 () | 1761669..1762718 | + | 1050 | WP_077704995.1 | baseplate J/gp47 family protein | - |
| CDIF28670_RS08715 () | 1762711..1763328 | + | 618 | WP_118712368.1 | YmfQ family protein | - |
| CDIF28670_RS08720 () | 1763340..1764365 | + | 1026 | WP_118712370.1 | phage tail protein | - |
| CDIF28670_RS08725 () | 1764382..1766070 | + | 1689 | WP_118712372.1 | hypothetical protein | - |
| CDIF28670_RS08730 () | 1766084..1766377 | + | 294 | WP_070112786.1 | hypothetical protein | - |
| CDIF28670_RS08735 () | 1766377..1766559 | + | 183 | WP_118712374.1 | hypothetical protein | - |
| CDIF28670_RS08740 () | 1766591..1766782 | + | 192 | WP_118712376.1 | hypothetical protein | - |
| CDIF28670_RS08745 () | 1766799..1767944 | + | 1146 | WP_118712378.1 | kelch repeat-containing protein | - |
| CDIF28670_RS08750 () | 1768136..1769266 | + | 1131 | WP_118712380.1 | kelch-like protein | - |
| CDIF28670_RS08755 () | 1769283..1769648 | + | 366 | WP_118712382.1 | hypothetical protein | - |
| CDIF28670_RS08760 () | 1769649..1769783 | + | 135 | WP_021373362.1 | XkdX family protein | - |
| CDIF28670_RS08765 () | 1769994..1771340 | + | 1347 | WP_118712384.1 | hypothetical protein | - |
| CDIF28670_RS08770 () | 1771340..1771519 | + | 180 | WP_021359024.1 | hypothetical protein | - |
| CDIF28670_RS08775 () | 1771560..1771790 | + | 231 | WP_118712386.1 | hemolysin XhlA family protein | - |
| CDIF28670_RS08780 () | 1771806..1772066 | + | 261 | WP_118712387.1 | phage holin family protein | - |
| CDIF28670_RS08785 () | 1772063..1772869 | + | 807 | WP_070112431.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF28670_RS08790 () | 1772914..1773090 | - | 177 | WP_021372034.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CDIF28670_RS19890 () | 1773091..1773258 | - | 168 | WP_021372031.1 | hypothetical protein | - |
| CDIF28670_RS08795 () | 1773786..1773971 | - | 186 | WP_021408080.1 | hypothetical protein | - |
| CDIF28670_RS08800 () | 1774696..1775373 | + | 678 | WP_003429969.1 | manganese catalase family protein | - |
| CDIF28670_RS08805 () | 1775547..1777583 | + | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| CDIF28670_RS08810 () | 1777776..1778342 | - | 567 | WP_118712389.1 | MarR family transcriptional regulator | - |
| CDIF28670_RS08815 () | 1778629..1779567 | + | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| CDIF28670_RS08820 () | 1779948..1780715 | + | 768 | WP_022617043.1 | Bacitracin export ATP-binding protein BceA | VF |
| CDIF28670_RS08825 () | 1780705..1782825 | + | 2121 | WP_118712391.1 | ABC transporter permease | - |
| CDIF28670_RS08830 () | 1783042..1784256 | + | 1215 | WP_118712393.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF28670_RS08835 () | 1784678..1785199 | - | 522 | WP_118712395.1 | N-acetyltransferase | - |
| CDIF28670_RS08840 () | 1785555..1786352 | + | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| CDIF28670_RS08845 () | 1786462..1787052 | + | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF28670_RS08850 () | 1787118..1788815 | + | 1698 | WP_118712397.1 | phospho-sugar mutase | - |
| CDIF28670_RS08855 () | 1789029..1789868 | + | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|