MGE detailed information
MGE type: Prophage MGE length: 67138 bp
Accession: NZ_CP107113 Location: 1684658..1751795 Organism: Clostridioides difficile strain R_cdtRKO10.3 Replicon: chromosome
Accession: NZ_CP107113 Location: 1684658..1751795 Organism: Clostridioides difficile strain R_cdtRKO10.3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM24_RS07835 (OGM24_07835) | 1679763..1680524 | + | 762 | WP_009889424.1 | SprT family zinc-dependent metalloprotease | - |
| OGM24_RS07840 (OGM24_07840) | 1681055..1681294 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| OGM24_RS07845 (OGM24_07845) | 1681513..1682559 | + | 1047 | WP_225532668.1 | ketol-acid reductoisomerase | - |
| OGM24_RS07850 (OGM24_07850) | 1682612..1684300 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| OGM24_RS07855 (OGM24_07855) | 1684658..1685788 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| OGM24_RS07860 (OGM24_07860) | 1685867..1686574 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| OGM24_RS07865 (OGM24_07865) | 1686587..1687456 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| OGM24_RS07870 (OGM24_07870) | 1688076..1688582 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM24_RS07875 (OGM24_07875) | 1688658..1689206 | - | 549 | WP_009893126.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS07880 (OGM24_07880) | 1689218..1689559 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| OGM24_RS07885 (OGM24_07885) | 1689736..1689939 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS07890 (OGM24_07890) | 1689987..1690796 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| OGM24_RS07895 (OGM24_07895) | 1690843..1691052 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| OGM24_RS07900 (OGM24_07900) | 1691062..1691436 | - | 375 | WP_003433505.1 | DUF6173 family protein | - |
| OGM24_RS07905 (OGM24_07905) | 1691512..1691709 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS07910 (OGM24_07910) | 1691740..1692132 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS07915 (OGM24_07915) | 1692113..1692262 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| OGM24_RS07920 (OGM24_07920) | 1692333..1692770 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| OGM24_RS07925 (OGM24_07925) | 1692782..1693948 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| OGM24_RS07930 (OGM24_07930) | 1693963..1694298 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| OGM24_RS07935 (OGM24_07935) | 1694351..1694923 | + | 573 | WP_003429822.1 | sigma factor | - |
| OGM24_RS07940 (OGM24_07940) | 1694946..1695518 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| OGM24_RS07945 (OGM24_07945) | 1695518..1697476 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| OGM24_RS07950 (OGM24_07950) | 1697488..1699905 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| OGM24_RS07955 (OGM24_07955) | 1700187..1700513 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| OGM24_RS07960 (OGM24_07960) | 1700462..1701832 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| OGM24_RS07965 (OGM24_07965) | 1701856..1701993 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| OGM24_RS07970 (OGM24_07970) | 1701986..1702465 | + | 480 | WP_009888825.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM24_RS07975 (OGM24_07975) | 1702748..1703200 | + | 453 | WP_009888826.1 | phage antirepressor | - |
| OGM24_RS07980 (OGM24_07980) | 1703492..1704466 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| OGM24_RS07985 (OGM24_07985) | 1704487..1704996 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| OGM24_RS07990 (OGM24_07990) | 1705066..1705758 | + | 693 | WP_009888829.1 | phage terminase small subunit | - |
| OGM24_RS07995 (OGM24_07995) | 1705748..1706989 | + | 1242 | WP_009888830.1 | PBSX family phage terminase large subunit | - |
| OGM24_RS08000 (OGM24_08000) | 1706995..1708437 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| OGM24_RS08005 (OGM24_08005) | 1708427..1709962 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| OGM24_RS08010 (OGM24_08010) | 1709964..1710212 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| OGM24_RS08015 (OGM24_08015) | 1710280..1710843 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| OGM24_RS08020 (OGM24_08020) | 1710855..1711745 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| OGM24_RS08025 (OGM24_08025) | 1711764..1711997 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| OGM24_RS08030 (OGM24_08030) | 1712007..1712408 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| OGM24_RS08035 (OGM24_08035) | 1712402..1712749 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| OGM24_RS08040 (OGM24_08040) | 1712749..1713039 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| OGM24_RS08045 (OGM24_08045) | 1713149..1713955 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| OGM24_RS08050 (OGM24_08050) | 1714304..1714741 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| OGM24_RS08055 (OGM24_08055) | 1714734..1714910 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| OGM24_RS08060 (OGM24_08060) | 1714911..1716221 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| OGM24_RS08065 (OGM24_08065) | 1716238..1716708 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| OGM24_RS08070 (OGM24_08070) | 1716767..1717594 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| OGM24_RS08075 (OGM24_08075) | 1717666..1718106 | + | 441 | WP_003429853.1 | phage portal protein | - |
| OGM24_RS08080 (OGM24_08080) | 1718447..1718608 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1718528..1718667 | - | 140 | - | - | Antitoxin Detail |
| OGM24_RS08085 (OGM24_08085) | 1719945..1720133 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| OGM24_RS08090 (OGM24_08090) | 1720252..1721118 | + | 867 | WP_009888845.1 | BRO family protein | - |
| OGM24_RS08095 (OGM24_08095) | 1721171..1721305 | + | 135 | WP_009888846.1 | hypothetical protein | - |
| OGM24_RS08100 (OGM24_08100) | 1721983..1722510 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| OGM24_RS08105 (OGM24_08105) | 1722648..1723415 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| OGM24_RS08110 (OGM24_08110) | 1723481..1725853 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| OGM24_RS08115 (OGM24_08115) | 1725870..1726559 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OGM24_RS08120 (OGM24_08120) | 1726552..1728444 | + | 1893 | WP_009893140.1 | NlpC/P60 family protein | - |
| OGM24_RS08125 (OGM24_08125) | 1728458..1728718 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| OGM24_RS08130 (OGM24_08130) | 1728723..1729142 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| OGM24_RS08135 (OGM24_08135) | 1729143..1730192 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| OGM24_RS08140 (OGM24_08140) | 1730185..1730802 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| OGM24_RS08145 (OGM24_08145) | 1730814..1731839 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| OGM24_RS08150 (OGM24_08150) | 1731856..1733382 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| OGM24_RS08155 (OGM24_08155) | 1733397..1733690 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| OGM24_RS08160 (OGM24_08160) | 1733690..1733872 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| OGM24_RS08165 (OGM24_08165) | 1733906..1734472 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| OGM24_RS08170 (OGM24_08170) | 1734503..1734793 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| OGM24_RS08175 (OGM24_08175) | 1734797..1735054 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| OGM24_RS08180 (OGM24_08180) | 1735315..1736178 | + | 864 | WP_003429958.1 | Abi family protein | - |
| OGM24_RS08185 (OGM24_08185) | 1736257..1737069 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM24_RS08190 (OGM24_08190) | 1737163..1739562 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| OGM24_RS08195 (OGM24_08195) | 1739603..1739788 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| OGM24_RS08200 (OGM24_08200) | 1740017..1740145 | - | 129 | WP_003433683.1 | hypothetical protein | - |
| OGM24_RS08205 (OGM24_08205) | 1740483..1741160 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| OGM24_RS08210 (OGM24_08210) | 1741334..1743370 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| OGM24_RS08215 (OGM24_08215) | 1743561..1744127 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| OGM24_RS08220 (OGM24_08220) | 1744411..1744947 | + | 537 | WP_009889454.1 | alpha/beta fold hydrolase | - |
| OGM24_RS08225 (OGM24_08225) | 1745579..1745677 | + | 99 | Protein_1533 | transposase | - |
| OGM24_RS08230 (OGM24_08230) | 1745679..1746796 | + | 1118 | Protein_1534 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| OGM24_RS08235 (OGM24_08235) | 1746915..1747322 | + | 408 | Protein_1535 | alpha/beta hydrolase | - |
| OGM24_RS08240 (OGM24_08240) | 1747787..1749001 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS08245 (OGM24_08245) | 1749421..1749942 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| OGM24_RS08250 (OGM24_08250) | 1750298..1751095 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| OGM24_RS08255 (OGM24_08255) | 1751205..1751795 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| OGM24_RS08260 (OGM24_08260) | 1751861..1753558 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| OGM24_RS08265 (OGM24_08265) | 1753772..1754611 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|