MGE detailed information
MGE type: Prophage MGE length: 16865 bp
Accession: NZ_CP010888 Location: 3069505..3086369 Organism: Clostridioides difficile strain 08ACD0030 Replicon: chromosome
Accession: NZ_CP010888 Location: 3069505..3086369 Organism: Clostridioides difficile strain 08ACD0030 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TW87_RS14540 () | 3064722..3065423 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| TW87_RS14545 () | 3065416..3065739 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| TW87_RS14550 () | 3065945..3068005 | - | 2061 | WP_021362720.1 | sensor histidine kinase | - |
| TW87_RS14560 () | 3068201..3068893 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| TW87_RS14565 () | 3069505..3069879 | - | 375 | WP_004454568.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| TW87_RS14570 () | 3070098..3070331 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| TW87_RS14575 () | 3070315..3070728 | + | 414 | WP_004454570.1 | hypothetical protein | - |
| TW87_RS14580 () | 3070747..3071043 | + | 297 | WP_009903134.1 | hypothetical protein | - |
| TW87_RS14585 () | 3071326..3071643 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| TW87_RS14590 () | 3071779..3072243 | + | 465 | WP_004454576.1 | hypothetical protein | - |
| TW87_RS14595 () | 3072572..3072733 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| TW87_RS20030 () | 3072785..3073599 | - | 815 | Protein_2776 | toxin Bro | - |
| TW87_RS20035 () | 3073719..3073871 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| TW87_RS14610 () | 3075010..3075933 | - | 924 | WP_021364626.1 | SHOCT domain-containing protein | - |
| - () | 3076077..3076206 | + | 130 | NuclAT_3 | - | Antitoxin Detail |
| TW87_RS14615 () | 3076127..3076279 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| TW87_RS14620 () | 3076553..3076876 | - | 324 | WP_021364628.1 | hypothetical protein | - |
| TW87_RS14625 () | 3076912..3077166 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| TW87_RS14630 () | 3077598..3078116 | - | 519 | Protein_2782 | IS200-IS605 family transposase ISEfa4 | Transposase |
| TW87_RS19905 () | 3078406..3078780 | - | 375 | Protein_2783 | BlaI/MecI/CopY family transcriptional regulator | - |
| TW87_RS14640 () | 3078885..3079262 | - | 378 | WP_021364350.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| TW87_RS14645 () | 3080067..3080561 | + | 495 | WP_021364347.1 | Type II secretion system protein G | VF |
| TW87_RS19910 () | 3080950..3081120 | + | 171 | WP_021416406.1 | hypothetical protein | - |
| TW87_RS14655 () | 3081597..3081786 | - | 190 | Protein_2787 | IS3 family transposase ISEfa10 | Transposase |
| TW87_RS14660 () | 3081948..3082298 | + | 351 | WP_021364349.1 | DUF3796 domain-containing protein | - |
| TW87_RS14665 () | 3082300..3082500 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| TW87_RS14670 () | 3082823..3082999 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| TW87_RS14675 () | 3083224..3083424 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| TW87_RS14680 () | 3084059..3084871 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| TW87_RS14685 () | 3084881..3085672 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| TW87_RS14690 () | 3085674..3086369 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| TW87_RS14695 () | 3086356..3087087 | + | 732 | WP_009897498.1 | membrane protein | - |
| TW87_RS14700 () | 3087401..3088201 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| TW87_RS14705 () | 3088740..3089456 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| TW87_RS14710 () | 3089425..3091014 | + | 1590 | WP_021364639.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.009 |