MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 116258 bp
Accession: NZ_CP045224 Location: 1036215..1152472 Organism: Clostridioides difficile strain TW11 Replicon: chromosome
Accession: NZ_CP045224 Location: 1036215..1152472 Organism: Clostridioides difficile strain TW11 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTB24_RS04590 () | 1032077..1034611 | + | 2535 | WP_003421526.1 | SPOR domain-containing protein | - |
| FTB24_RS04595 () | 1034732..1036723 | + | 1992 | WP_003421528.1 | hypothetical protein | - |
| FTB24_RS04600 () | 1036713..1037033 | + | 321 | WP_003421530.1 | hypothetical protein | - |
| FTB24_RS04605 () | 1037231..1038100 | + | 870 | WP_032510299.1 | UTP--glucose-1-phosphate uridylyltransferase | VF |
| FTB24_RS04610 () | 1038124..1039137 | + | 1014 | WP_003421534.1 | UDP-glucose 4-epimerase | VF |
| FTB24_RS04615 () | 1039249..1041183 | + | 1935 | WP_009906071.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| FTB24_RS04620 () | 1041338..1042201 | + | 864 | WP_003421538.1 | DUF3800 domain-containing protein | - |
| FTB24_RS04625 () | 1042409..1043290 | - | 882 | WP_003421540.1 | LysR family transcriptional regulator | - |
| FTB24_RS04630 () | 1043703..1044551 | + | 849 | WP_003421542.1 | sugar phosphate isomerase/epimerase | - |
| FTB24_RS04635 () | 1044630..1046552 | + | 1923 | WP_003421544.1 | FAD-dependent oxidoreductase | - |
| FTB24_RS04640 () | 1046634..1047497 | + | 864 | WP_003421545.1 | shikimate dehydrogenase | - |
| FTB24_RS04645 () | 1047699..1048916 | + | 1218 | WP_003421548.1 | MFS transporter | - |
| FTB24_RS04650 () | 1049152..1051017 | + | 1866 | WP_003421550.1 | HIRAN domain-containing protein | - |
| FTB24_RS04655 () | 1051195..1052559 | - | 1365 | WP_003421551.1 | amidohydrolase | - |
| FTB24_RS04660 () | 1052737..1054080 | - | 1344 | WP_003421552.1 | NCS2 family permease | - |
| FTB24_RS04665 () | 1054583..1055236 | + | 654 | WP_009906068.1 | pentapeptide repeat-containing protein | - |
| FTB24_RS04670 () | 1055377..1056648 | + | 1272 | WP_012816328.1 | branched-chain amino acid transport system II carrier protein | - |
| FTB24_RS04675 () | 1056850..1058037 | + | 1188 | WP_003421558.1 | DUF3798 domain-containing protein | - |
| FTB24_RS04680 () | 1058267..1058713 | - | 447 | Protein_904 | AAA family ATPase | - |
| FTB24_RS04685 () | 1058758..1059237 | + | 480 | Protein_905 | hypothetical protein | - |
| FTB24_RS04690 () | 1059239..1059535 | + | 297 | WP_003415948.1 | membrane protein | - |
| FTB24_RS04700 () | 1059930..1061120 | + | 1191 | WP_003415950.1 | pyridoxal phosphate-dependent aminotransferase | - |
| FTB24_RS04705 () | 1061568..1062569 | + | 1002 | WP_003424813.1 | aspartate--ammonia ligase | - |
| FTB24_RS04710 () | 1062673..1063062 | + | 390 | WP_003415953.1 | DUF1232 domain-containing protein | - |
| FTB24_RS04715 () | 1063227..1063373 | - | 147 | WP_003415957.1 | hypothetical protein | - |
| FTB24_RS04720 () | 1063674..1064129 | + | 456 | Protein_911 | phage holin family protein | - |
| FTB24_RS04725 () | 1064133..1064963 | + | 831 | WP_003415961.1 | N-acetylmuramoyl-L-alanine amidase | - |
| FTB24_RS04730 () | 1065363..1065527 | + | 165 | WP_003424195.1 | hypothetical protein | - |
| FTB24_RS04735 () | 1065751..1066596 | - | 846 | WP_003424194.1 | DUF4878 domain-containing protein | - |
| FTB24_RS19610 () | 1067141..1067686 | - | 546 | WP_077699404.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| FTB24_RS19615 () | 1067752..1067994 | - | 243 | WP_003424191.1 | hypothetical protein | - |
| FTB24_RS04750 () | 1068514..1068666 | + | 153 | WP_003424190.1 | hypothetical protein | Toxin Detail |
| - () | 1068610..1068710 | - | 101 | NuclAT_0 | - | Antitoxin Detail |
| FTB24_RS04755 () | 1072656..1072844 | - | 189 | WP_003424185.1 | helix-turn-helix transcriptional regulator | - |
| FTB24_RS04760 () | 1073032..1073265 | + | 234 | WP_003424184.1 | hypothetical protein | - |
| FTB24_RS04765 () | 1073252..1073509 | + | 258 | WP_003424182.1 | hypothetical protein | - |
| FTB24_RS04770 () | 1073502..1073882 | + | 381 | WP_003424180.1 | hypothetical protein | - |
| FTB24_RS04780 () | 1074419..1074613 | + | 195 | WP_003424168.1 | hypothetical protein | - |
| FTB24_RS04795 () | 1075599..1076171 | + | 573 | WP_003424166.1 | hypothetical protein | - |
| FTB24_RS04800 () | 1076614..1076985 | + | 372 | WP_003424165.1 | hypothetical protein | - |
| FTB24_RS04805 () | 1077124..1077381 | + | 258 | WP_003424164.1 | hypothetical protein | - |
| FTB24_RS04810 () | 1077704..1077988 | + | 285 | WP_003424163.1 | hypothetical protein | - |
| FTB24_RS04815 () | 1078265..1078501 | - | 237 | WP_003424162.1 | hypothetical protein | - |
| FTB24_RS04820 () | 1078838..1079065 | + | 228 | WP_003424160.1 | helix-turn-helix domain-containing protein | - |
| FTB24_RS04825 () | 1079052..1079390 | + | 339 | WP_003424159.1 | hypothetical protein | - |
| FTB24_RS04830 () | 1079916..1080401 | + | 486 | WP_009905654.1 | SH3 domain-containing protein | - |
| FTB24_RS04835 () | 1080739..1081146 | + | 408 | WP_029158138.1 | hypothetical protein | - |
| FTB24_RS04840 () | 1081990..1082541 | + | 552 | WP_003424155.1 | tryptophan transporter | - |
| FTB24_RS04850 () | 1083370..1084806 | + | 1437 | WP_009905653.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| FTB24_RS04855 () | 1085057..1086493 | + | 1437 | WP_003424153.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| FTB24_RS04865 () | 1086901..1087239 | - | 339 | WP_009905652.1 | DUF3784 domain-containing protein | - |
| FTB24_RS04870 () | 1087544..1088155 | - | 612 | WP_003424150.1 | CoA pyrophosphatase | - |
| FTB24_RS04875 () | 1088380..1089300 | - | 921 | WP_003424149.1 | PhzF family isomerase | - |
| FTB24_RS04880 () | 1089556..1089912 | + | 357 | WP_003424148.1 | helix-turn-helix transcriptional regulator | - |
| FTB24_RS04885 () | 1090027..1090203 | - | 177 | WP_003428796.1 | hypothetical protein | - |
| FTB24_RS19510 () | 1090867..1091040 | + | 174 | WP_003424147.1 | hypothetical protein | - |
| FTB24_RS04890 () | 1091055..1091189 | + | 135 | WP_003424146.1 | hypothetical protein | - |
| FTB24_RS04895 () | 1091545..1091835 | + | 291 | WP_003424145.1 | MTH1187 family thiamine-binding protein | - |
| FTB24_RS04900 () | 1091810..1092580 | + | 771 | WP_003424144.1 | ABC transporter permease | - |
| FTB24_RS04905 () | 1092602..1093615 | + | 1014 | WP_003424143.1 | ABC transporter substrate-binding protein | - |
| FTB24_RS04910 () | 1093584..1094318 | + | 735 | WP_003424142.1 | ABC transporter ATP-binding protein | - |
| FTB24_RS04915 () | 1094481..1097324 | + | 2844 | WP_003424141.1 | DNA mismatch repair protein MutS | - |
| FTB24_RS04920 () | 1097335..1099299 | + | 1965 | WP_003424140.1 | DNA mismatch repair endonuclease MutL | - |
| FTB24_RS04925 () | 1099320..1100255 | + | 936 | WP_009905646.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| FTB24_RS04930 () | 1100369..1100626 | + | 258 | WP_003424138.1 | RNA chaperone Hfq | - |
| FTB24_RS04935 () | 1100753..1102033 | + | 1281 | WP_003424137.1 | methionine gamma-lyase family protein | - |
| FTB24_RS04940 () | 1102102..1103448 | + | 1347 | WP_003424136.1 | M20 family metallopeptidase | - |
| FTB24_RS04945 () | 1103581..1104663 | + | 1083 | WP_003424135.1 | SIR2 family protein | - |
| FTB24_RS04950 () | 1104750..1105382 | + | 633 | WP_003424134.1 | cyclase family protein | - |
| FTB24_RS04955 () | 1105428..1105967 | + | 540 | WP_003424133.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| FTB24_RS04960 () | 1106016..1106702 | + | 687 | WP_003424132.1 | DUF554 domain-containing protein | - |
| FTB24_RS04965 () | 1106884..1107759 | + | 876 | WP_003424130.1 | hypothetical protein | - |
| FTB24_RS04970 () | 1107975..1108955 | - | 981 | WP_003424128.1 | CPBP family intramembrane metalloprotease | - |
| FTB24_RS04975 () | 1109137..1109346 | + | 210 | Protein_958 | acyl-CoA thioesterase | - |
| FTB24_RS04980 () | 1109513..1110904 | + | 1392 | WP_003424124.1 | hypothetical protein | - |
| FTB24_RS04985 () | 1111082..1111669 | + | 588 | WP_003424122.1 | TetR/AcrR family transcriptional regulator | - |
| FTB24_RS04990 () | 1111702..1112493 | + | 792 | WP_003424121.1 | class I SAM-dependent methyltransferase | - |
| FTB24_RS04995 () | 1112674..1115091 | - | 2418 | WP_003424119.1 | ABC transporter permease | - |
| FTB24_RS05000 () | 1115104..1115769 | - | 666 | WP_003424118.1 | Bacitracin export ATP-binding protein BceA | VF |
| FTB24_RS05005 () | 1115851..1116882 | - | 1032 | WP_009905636.1 | HAMP domain-containing histidine kinase | - |
| FTB24_RS05010 () | 1116872..1117558 | - | 687 | WP_003424116.1 | Transcriptional regulatory protein WalR | VF |
| FTB24_RS05015 () | 1117716..1118780 | - | 1065 | WP_003424115.1 | 4Fe-4S ferredoxin | - |
| FTB24_RS05020 () | 1119042..1119713 | + | 672 | WP_003424114.1 | Sensory transduction protein regX3 | VF |
| FTB24_RS05025 () | 1119715..1120623 | + | 909 | WP_003424113.1 | HAMP domain-containing histidine kinase | - |
| FTB24_RS05030 () | 1120698..1121384 | + | 687 | WP_003424112.1 | ABC transporter ATP-binding protein YxdL | VF |
| FTB24_RS05035 () | 1121381..1123936 | + | 2556 | WP_003424110.1 | FtsX-like permease family protein | - |
| FTB24_RS05040 () | 1124141..1125340 | - | 1200 | WP_003424103.1 | coenzyme F420-0:L-glutamate ligase | - |
| FTB24_RS05045 () | 1125459..1126346 | + | 888 | WP_003424101.1 | LysR family transcriptional regulator | - |
| FTB24_RS05055 () | 1126778..1127092 | + | 315 | WP_000420682.1 | YdcP family protein | - |
| FTB24_RS05060 () | 1127108..1127494 | + | 387 | WP_000985015.1 | YdcP family protein | - |
| FTB24_RS05065 () | 1127523..1128908 | + | 1386 | WP_000813488.1 | DNA translocase FtsK | - |
| FTB24_RS05070 () | 1128911..1129063 | + | 153 | WP_000879507.1 | hypothetical protein | - |
| FTB24_RS05075 () | 1129086..1130291 | + | 1206 | WP_000398284.1 | replication initiation factor domain-containing protein | - |
| FTB24_RS05080 () | 1130334..1130555 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| FTB24_RS05085 () | 1130672..1131169 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| FTB24_RS05090 () | 1131144..1131650 | + | 507 | WP_000506270.1 | conjugal transfer protein | - |
| FTB24_RS05095 () | 1131634..1134080 | + | 2447 | Protein_981 | ATP-binding protein | - |
| FTB24_RS05100 () | 1134083..1136260 | + | 2178 | WP_000804748.1 | membrane protein | - |
| FTB24_RS05105 () | 1136257..1137258 | + | 1002 | WP_000769868.1 | putative endopeptidase p60 | VF |
| FTB24_RS05110 () | 1137255..1138187 | + | 933 | WP_001224319.1 | conjugal transfer protein | - |
| FTB24_RS05120 () | 1138432..1138548 | + | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| FTB24_RS05125 () | 1138564..1140483 | + | 1920 | WP_000691727.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| FTB24_RS05130 () | 1140602..1140769 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| FTB24_RS05135 () | 1140829..1141182 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| FTB24_RS05145 () | 1141687..1142109 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| FTB24_RS05150 () | 1142106..1142336 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| FTB24_RS05160 () | 1142797..1143000 | + | 204 | WP_000814511.1 | excisionase | - |
| FTB24_RS05165 () | 1143082..1144299 | + | 1218 | WP_001291561.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| FTB24_RS05170 () | 1144677..1146332 | + | 1656 | WP_003415963.1 | hypothetical protein | - |
| FTB24_RS05175 () | 1146857..1148308 | + | 1452 | WP_009906057.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| FTB24_RS05180 () | 1148369..1148686 | - | 318 | WP_003421567.1 | hypothetical protein | - |
| FTB24_RS05185 () | 1149089..1149277 | + | 189 | WP_003421570.1 | hypothetical protein | - |
| FTB24_RS05190 () | 1149599..1149781 | - | 183 | WP_003415972.1 | hypothetical protein | - |
| FTB24_RS05195 () | 1150180..1151388 | + | 1209 | WP_009906050.1 | dicarboxylate/amino acid:cation symporter | - |
| FTB24_RS05200 () | 1151496..1152572 | - | 1077 | WP_003415975.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| FTB24_RS05205 () | 1152801..1153328 | + | 528 | WP_003416006.1 | hypoxanthine phosphoribosyltransferase | - |
| FTB24_RS05210 () | 1153417..1154349 | + | 933 | WP_003416007.1 | phosphatase PAP2 family protein | - |
| FTB24_RS05215 () | 1154410..1155636 | + | 1227 | WP_003416008.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| FTB24_RS05220 () | 1155720..1155941 | + | 222 | WP_003416009.1 | alpha/beta-type small acid-soluble spore protein | - |
| FTB24_RS05225 () | 1156130..1156300 | + | 171 | WP_003416012.1 | hypothetical protein | - |
| FTB24_RS05230 () | 1156393..1156854 | - | 462 | WP_003416014.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|