MGE detailed information
MGE type: Prophage MGE length: 16134 bp
Accession: NZ_CP019858 Location: 2599203..2615336 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Accession: NZ_CP019858 Location: 2599203..2615336 Organism: Clostridioides difficile strain DSM 29688 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29688_RS12895 () | 2595724..2596425 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF29688_RS12900 () | 2596418..2596741 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF29688_RS12905 () | 2596947..2599007 | - | 2061 | WP_021362720.1 | sensor histidine kinase | - |
| CDIF29688_RS12915 () | 2599203..2599895 | - | 693 | WP_004454566.1 | Transcriptional regulatory protein WalR | VF |
| CDIF29688_RS12920 () | 2600507..2600880 | - | 374 | Protein_2398 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29688_RS12925 () | 2601099..2601332 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF29688_RS12930 () | 2601316..2601729 | + | 414 | WP_021362722.1 | hypothetical protein | - |
| CDIF29688_RS12935 () | 2601748..2601948 | + | 201 | WP_021362723.1 | hypothetical protein | - |
| CDIF29688_RS12940 () | 2602326..2602643 | + | 318 | WP_004454574.1 | hypothetical protein | - |
| CDIF29688_RS12945 () | 2602779..2603243 | + | 465 | WP_025782691.1 | hypothetical protein | - |
| CDIF29688_RS12955 () | 2603572..2603733 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF29688_RS12960 () | 2603785..2604237 | - | 453 | WP_021366820.1 | hypothetical protein | - |
| CDIF29688_RS12965 () | 2604234..2604599 | - | 366 | WP_016729316.1 | Bro-N domain-containing protein | - |
| CDIF29688_RS20325 () | 2604720..2604872 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| CDIF29688_RS12970 () | 2605621..2606543 | - | 923 | Protein_2408 | SHOCT domain-containing protein | - |
| - () | 2606687..2606816 | + | 130 | NuclAT_7 | - | Antitoxin Detail |
| CDIF29688_RS12975 () | 2606737..2606889 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF29688_RS12980 () | 2607163..2607486 | - | 324 | WP_021366819.1 | hypothetical protein | - |
| CDIF29688_RS12985 () | 2607522..2607776 | - | 255 | WP_025782692.1 | hypothetical protein | - |
| CDIF29688_RS12990 () | 2608084..2608581 | - | 498 | Protein_2412 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF29688_RS12995 () | 2608871..2609246 | - | 376 | Protein_2413 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29688_RS13000 () | 2609351..2609728 | - | 378 | WP_021366893.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29688_RS13005 () | 2610533..2611027 | + | 495 | WP_021364347.1 | Type II secretion system protein G | VF |
| CDIF29688_RS13010 () | 2611416..2611586 | + | 171 | WP_032509469.1 | hypothetical protein | - |
| CDIF29688_RS13015 () | 2612063..2612251 | - | 189 | WP_021366823.1 | IS3 family transposase ISEfa10 | Transposase |
| CDIF29688_RS13020 () | 2612413..2612763 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF29688_RS13025 () | 2612765..2612965 | + | 201 | WP_003423163.1 | hypothetical protein | VF |
| CDIF29688_RS13030 () | 2613288..2613464 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF29688_RS13035 () | 2613689..2613889 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF29688_RS13040 () | 2614524..2615336 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF29688_RS13045 () | 2615346..2616137 | + | 792 | WP_025782693.1 | ABC transporter permease | - |
| CDIF29688_RS13050 () | 2616139..2616834 | + | 696 | WP_009893573.1 | ATP-binding cassette domain-containing protein | - |
| CDIF29688_RS13055 () | 2616821..2617552 | + | 732 | WP_009890514.1 | membrane protein | - |
| CDIF29688_RS13060 () | 2617866..2618666 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF29688_RS13065 () | 2619206..2619922 | + | 717 | WP_021390219.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|