MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP026593 Location: 1684434..1750871 Organism: Clostridioides difficile strain 12-00008 Replicon: chromosome
Accession: NZ_CP026593 Location: 1684434..1750871 Organism: Clostridioides difficile strain 12-00008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3347_RS08095 () | 1679539..1680300 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3347_RS08100 () | 1680831..1681070 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3347_RS08105 () | 1681340..1682335 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3347_RS08110 () | 1682388..1684076 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3347_RS08115 () | 1684434..1685564 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| C3347_RS08120 () | 1685643..1686350 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3347_RS08125 () | 1686363..1687232 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3347_RS08130 () | 1687852..1688358 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3347_RS08135 () | 1688434..1688982 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3347_RS08140 () | 1688994..1689335 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3347_RS08145 () | 1689512..1689715 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3347_RS08150 () | 1689763..1690572 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3347_RS08155 () | 1690619..1690828 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3347_RS08160 () | 1690838..1691212 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3347_RS08165 () | 1691288..1691485 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3347_RS08170 () | 1691516..1691908 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3347_RS19225 () | 1691889..1692038 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3347_RS08175 () | 1692109..1692546 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3347_RS08180 () | 1692558..1693724 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3347_RS08185 () | 1693739..1694074 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3347_RS08190 () | 1694127..1694699 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3347_RS08195 () | 1694722..1695294 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3347_RS08200 () | 1695294..1697252 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3347_RS08205 () | 1697264..1699681 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3347_RS08210 () | 1699963..1700289 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3347_RS08215 () | 1700238..1701608 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3347_RS19320 () | 1701632..1701769 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3347_RS08220 () | 1701762..1702241 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3347_RS08225 () | 1702524..1703073 | + | 550 | Protein_1483 | Bro-N domain-containing protein | - |
| C3347_RS08230 () | 1703268..1704242 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3347_RS19230 () | 1704263..1704772 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3347_RS08240 () | 1704842..1705534 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3347_RS08245 () | 1705512..1706765 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3347_RS08250 () | 1706771..1708213 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3347_RS08255 () | 1708203..1709738 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3347_RS08260 () | 1709740..1709988 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3347_RS08265 () | 1710056..1710619 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3347_RS08270 () | 1710631..1711521 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3347_RS08275 () | 1711540..1711773 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3347_RS08280 () | 1711783..1712184 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3347_RS08285 () | 1712178..1712525 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3347_RS08290 () | 1712525..1712815 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3347_RS08295 () | 1712925..1713731 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3347_RS08300 () | 1714080..1714517 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3347_RS08305 () | 1714510..1714686 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3347_RS08310 () | 1714687..1715997 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3347_RS08315 () | 1716014..1716484 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3347_RS08320 () | 1716543..1717370 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3347_RS08325 () | 1717442..1717882 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3347_RS08335 () | 1718223..1718384 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718304..1718443 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718304..1718443 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1718788..1718836 | - | 49 | NuclAT_4 | - | - |
| - () | 1718788..1718836 | - | 49 | NuclAT_5 | - | - |
| C3347_RS08340 () | 1719721..1719909 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3347_RS08345 () | 1720028..1720894 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3347_RS08355 () | 1721759..1722286 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3347_RS08360 () | 1722424..1723191 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3347_RS08365 () | 1723257..1725629 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3347_RS08370 () | 1725646..1726335 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3347_RS08375 () | 1726328..1728220 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| C3347_RS08380 () | 1728234..1728494 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3347_RS08385 () | 1728499..1728918 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3347_RS08390 () | 1728919..1729968 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3347_RS08395 () | 1729961..1730578 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3347_RS08400 () | 1730590..1731615 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3347_RS08405 () | 1731632..1733158 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3347_RS08410 () | 1733173..1733466 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3347_RS08415 () | 1733466..1733648 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3347_RS08420 () | 1733682..1734248 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3347_RS08425 () | 1734279..1734569 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3347_RS08430 () | 1734573..1734830 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3347_RS08435 () | 1735091..1735954 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3347_RS08440 () | 1736033..1736845 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3347_RS08445 () | 1736939..1739338 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| C3347_RS08450 () | 1739379..1739564 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3347_RS08455 () | 1740259..1740936 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3347_RS08460 () | 1741110..1743146 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3347_RS08465 () | 1743337..1743903 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3347_RS08470 () | 1744187..1744714 | + | 528 | Protein_1530 | alpha/beta fold hydrolase | - |
| C3347_RS08480 () | 1745346..1745453 | + | 108 | WP_009889455.1 | transposase | - |
| C3347_RS08485 () | 1745455..1746572 | + | 1118 | Protein_1532 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3347_RS08490 () | 1746637..1747098 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3347_RS08495 () | 1747563..1748777 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3347_RS08500 () | 1749197..1749718 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3347_RS08505 () | 1750074..1750871 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3347_RS08510 () | 1750981..1751571 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3347_RS08515 () | 1751637..1753334 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3347_RS08520 () | 1753548..1754387 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |