Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) CD-RCd/-
Location 1718223..1718443 Replicon chromosome
Accession NZ_CP026593
Organism Clostridioides difficile strain 12-00008

Toxin (Protein)


Gene name CD0956.2 Uniprot ID Q183Z5
Locus tag C3347_RS08335 Protein ID WP_003429855.1
Coordinates 1718223..1718384 (+) Length 54 a.a.

Antitoxin (RNA)


Gene name RCd10
Locus tag -
Coordinates 1718304..1718443 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C3347_RS08300 1714080..1714517 + 438 WP_009888839.1 hypothetical protein -
C3347_RS08305 1714510..1714686 + 177 WP_009888840.1 hypothetical protein -
C3347_RS08310 1714687..1715997 + 1311 WP_009893136.1 phage tail sheath family protein -
C3347_RS08315 1716014..1716484 + 471 WP_009888842.1 phage tail tube protein -
C3347_RS08320 1716543..1717370 + 828 WP_009888843.1 hypothetical protein -
C3347_RS08325 1717442..1717882 + 441 WP_003429853.1 phage portal protein -
C3347_RS08335 1718223..1718384 + 162 WP_003429855.1 hypothetical protein Toxin
- 1718304..1718443 - 140 NuclAT_1 - Antitoxin
- 1718304..1718443 - 140 NuclAT_2 - Antitoxin
- 1718788..1718836 - 49 NuclAT_4 - -
- 1718788..1718836 - 49 NuclAT_5 - -
C3347_RS08340 1719721..1719909 + 189 WP_003429858.1 hypothetical protein -
C3347_RS08345 1720028..1720894 + 867 WP_009888845.1 hypothetical protein -
C3347_RS08355 1721759..1722286 + 528 WP_009888847.1 DUF4352 domain-containing protein -
C3347_RS08360 1722424..1723191 + 768 WP_009888848.1 DUF4428 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 1684434..1750871 66437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 54 a.a.        Molecular weight: 6120.42 Da        Isoelectric Point: 10.8938

>T95215 WP_003429855.1 NZ_CP026593:1718223-1718384 [Clostridioides difficile]
MNNFLLNVIAGVIASLIFCLICKVFLKVKSHSTRGKSKSGWEFDFKIKFHKFK

Download         Length: 162 bp

>T95215 NZ_CP026593:1718223-1718384 [Clostridioides difficile]
ATGAATAACTTTTTACTTAATGTAATAGCTGGCGTTATTGCTAGTTTAATATTTTGCTTAATTTGTAAAGTATTTCTAAA
AGTAAAAAGCCACTCAACTCGTGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAGTTCCACAAATTTAAAT
AA

Antitoxin


Download         Length: 140 bp

>AT95215 NZ_CP026593:c1718443-1718304 [Clostridioides difficile]
AAGAAGAACTACAATCTATTTGACAGTAGAGTGAAGTTCATAATTTAAACAATTAGTAATTATTTAAATTTGTGGAACTT
GATTTTAAAATCAAATTCCCAGCCACTTTTACTCTTGCCACGAGTTGAGTGGCTTTTTAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A069AVN2

Antitoxin

Download structure file

References