MGE detailed information
MGE type: Prophage MGE length: 45629 bp
Accession: NZ_CP107108 Location: 1298748..1344376 Organism: Clostridioides difficile strain R_phiCD75-3 Replicon: chromosome
Accession: NZ_CP107108 Location: 1298748..1344376 Organism: Clostridioides difficile strain R_phiCD75-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM26_RS06075 (OGM26_06075) | 1293756..1294835 | + | 1080 | WP_003438164.1 | endolytic transglycosylase MltG | - |
| OGM26_RS06080 (OGM26_06080) | 1295007..1295681 | + | 675 | WP_009888982.1 | O-methyltransferase | - |
| OGM26_RS06085 (OGM26_06085) | 1295668..1296915 | + | 1248 | WP_009888984.1 | U32 family peptidase | - |
| OGM26_RS06090 (OGM26_06090) | 1296987..1298651 | + | 1665 | WP_003438168.1 | penicillin-binding protein 2 | - |
| OGM26_RS06095 (OGM26_06095) | 1298748..1299032 | - | 285 | WP_003419254.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM26_RS06100 (OGM26_06100) | 1299055..1300572 | - | 1518 | WP_021360429.1 | recombinase family protein | - |
| OGM26_RS06105 (OGM26_06105) | 1301592..1301810 | - | 219 | WP_167650567.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS06110 (OGM26_06110) | 1302565..1302720 | + | 156 | WP_021360434.1 | hypothetical protein | - |
| OGM26_RS06115 (OGM26_06115) | 1302739..1303110 | - | 372 | WP_167650568.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS06120 (OGM26_06120) | 1303251..1303436 | + | 186 | WP_168346843.1 | hypothetical protein | - |
| OGM26_RS06125 (OGM26_06125) | 1303451..1304209 | + | 759 | WP_263719377.1 | BRO family protein | - |
| OGM26_RS06130 (OGM26_06130) | 1304266..1304901 | + | 636 | WP_263719378.1 | hypothetical protein | - |
| OGM26_RS06135 (OGM26_06135) | 1304970..1305188 | + | 219 | WP_009894510.1 | hypothetical protein | - |
| OGM26_RS06140 (OGM26_06140) | 1305297..1305464 | + | 168 | WP_021380341.1 | hypothetical protein | - |
| OGM26_RS06145 (OGM26_06145) | 1305507..1305680 | + | 174 | WP_021360440.1 | hypothetical protein | - |
| OGM26_RS06150 (OGM26_06150) | 1305696..1306949 | + | 1254 | WP_021360441.1 | DEAD/DEAH box helicase | - |
| OGM26_RS06155 (OGM26_06155) | 1306953..1307255 | + | 303 | WP_021360442.1 | VRR-NUC domain-containing protein | - |
| OGM26_RS06160 (OGM26_06160) | 1307256..1308941 | + | 1686 | WP_263719379.1 | AAA family ATPase | - |
| OGM26_RS06165 (OGM26_06165) | 1309005..1309448 | + | 444 | WP_167650288.1 | DUF669 domain-containing protein | - |
| OGM26_RS06170 (OGM26_06170) | 1309662..1311395 | + | 1734 | WP_168346844.1 | hypothetical protein | - |
| OGM26_RS06175 (OGM26_06175) | 1311407..1313290 | + | 1884 | WP_263719380.1 | DNA primase family protein | - |
| OGM26_RS06180 (OGM26_06180) | 1313626..1314054 | + | 429 | WP_263719381.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM26_RS06185 (OGM26_06185) | 1314241..1314669 | + | 429 | WP_074092167.1 | terminase small subunit | - |
| OGM26_RS06190 (OGM26_06190) | 1314650..1315900 | + | 1251 | WP_207712174.1 | PBSX family phage terminase large subunit | - |
| OGM26_RS06195 (OGM26_06195) | 1315980..1317368 | + | 1389 | WP_263719406.1 | phage portal protein | - |
| OGM26_RS06200 (OGM26_06200) | 1317358..1318893 | + | 1536 | WP_263719382.1 | minor capsid protein | - |
| OGM26_RS06205 (OGM26_06205) | 1318895..1319143 | + | 249 | WP_250818029.1 | hypothetical protein | - |
| OGM26_RS06210 (OGM26_06210) | 1319213..1319623 | + | 411 | WP_250818030.1 | hypothetical protein | - |
| OGM26_RS06215 (OGM26_06215) | 1319720..1319950 | + | 231 | WP_263719383.1 | hypothetical protein | - |
| OGM26_RS06220 (OGM26_06220) | 1319995..1320531 | + | 537 | WP_263719384.1 | phage scaffolding protein | - |
| OGM26_RS06225 (OGM26_06225) | 1320551..1321621 | + | 1071 | WP_263719385.1 | phage coat protein | - |
| OGM26_RS06230 (OGM26_06230) | 1321627..1322028 | + | 402 | WP_263719387.1 | hypothetical protein | - |
| OGM26_RS06235 (OGM26_06235) | 1322022..1322369 | + | 348 | WP_263719389.1 | hypothetical protein | - |
| OGM26_RS06240 (OGM26_06240) | 1322423..1322794 | + | 372 | WP_074092173.1 | HK97 gp10 family phage protein | - |
| OGM26_RS06245 (OGM26_06245) | 1322787..1323224 | + | 438 | WP_107635321.1 | hypothetical protein | - |
| OGM26_RS06250 (OGM26_06250) | 1323217..1323393 | + | 177 | WP_074092175.1 | hypothetical protein | - |
| OGM26_RS06255 (OGM26_06255) | 1323394..1324704 | + | 1311 | WP_263719390.1 | phage tail sheath family protein | - |
| OGM26_RS06260 (OGM26_06260) | 1324724..1325200 | + | 477 | WP_009901461.1 | phage tail tube protein | - |
| OGM26_RS06265 (OGM26_06265) | 1325253..1325510 | + | 258 | WP_038812175.1 | hypothetical protein | - |
| OGM26_RS06270 (OGM26_06270) | 1325512..1325952 | + | 441 | WP_022618880.1 | hypothetical protein | - |
| OGM26_RS06275 (OGM26_06275) | 1326278..1326430 | + | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| - | 1326351..1326480 | - | 130 | - | - | Antitoxin Detail |
| OGM26_RS06280 (OGM26_06280) | 1326569..1326802 | + | 234 | WP_263719391.1 | hypothetical protein | - |
| OGM26_RS06285 (OGM26_06285) | 1326799..1327008 | - | 210 | WP_263719392.1 | hypothetical protein | - |
| OGM26_RS06290 (OGM26_06290) | 1327272..1327832 | + | 561 | WP_263719393.1 | ribosomal protein L7/L12 | - |
| OGM26_RS06295 (OGM26_06295) | 1327910..1330198 | + | 2289 | WP_263719394.1 | tape measure protein | - |
| OGM26_RS06300 (OGM26_06300) | 1330214..1330903 | + | 690 | WP_263719396.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OGM26_RS06305 (OGM26_06305) | 1330896..1332788 | + | 1893 | WP_263719397.1 | NlpC/P60 family protein | - |
| OGM26_RS06310 (OGM26_06310) | 1332802..1333062 | + | 261 | WP_074073702.1 | DUF2577 domain-containing protein | - |
| OGM26_RS06315 (OGM26_06315) | 1333067..1333486 | + | 420 | WP_263719398.1 | DUF2634 domain-containing protein | - |
| OGM26_RS06320 (OGM26_06320) | 1333487..1334536 | + | 1050 | WP_107612973.1 | baseplate J/gp47 family protein | - |
| OGM26_RS06325 (OGM26_06325) | 1334529..1335146 | + | 618 | WP_074073707.1 | YmfQ family protein | - |
| OGM26_RS06330 (OGM26_06330) | 1335158..1335964 | + | 807 | WP_263719399.1 | phage tail protein | - |
| OGM26_RS06335 (OGM26_06335) | 1335979..1337253 | + | 1275 | WP_227856187.1 | hypothetical protein | - |
| OGM26_RS06340 (OGM26_06340) | 1337281..1337580 | + | 300 | WP_263719400.1 | hypothetical protein | - |
| OGM26_RS06345 (OGM26_06345) | 1337582..1337719 | + | 138 | WP_095904959.1 | XkdX family protein | - |
| OGM26_RS06350 (OGM26_06350) | 1337751..1337978 | + | 228 | WP_263719401.1 | hemolysin XhlA family protein | - |
| OGM26_RS06355 (OGM26_06355) | 1337998..1338255 | + | 258 | WP_022619968.1 | phage holin family protein | - |
| OGM26_RS06360 (OGM26_06360) | 1338255..1339061 | + | 807 | WP_263719402.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM26_RS06365 (OGM26_06365) | 1339439..1339945 | + | 507 | WP_139625512.1 | hypothetical protein | - |
| OGM26_RS06370 (OGM26_06370) | 1339964..1340392 | + | 429 | WP_065977965.1 | hypothetical protein | - |
| OGM26_RS06375 (OGM26_06375) | 1340394..1341128 | + | 735 | WP_074138399.1 | hypothetical protein | - |
| OGM26_RS06380 (OGM26_06380) | 1341272..1341589 | - | 318 | WP_263719403.1 | hypothetical protein | - |
| OGM26_RS06385 (OGM26_06385) | 1341950..1342339 | + | 390 | WP_021407931.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| OGM26_RS06390 (OGM26_06390) | 1342661..1343170 | + | 510 | WP_021426243.1 | glycopeptide resistance protein VanZ1 | - |
| OGM26_RS06395 (OGM26_06395) | 1343272..1343466 | - | 195 | WP_003419284.1 | hypothetical protein | - |
| OGM26_RS06400 (OGM26_06400) | 1343984..1344376 | - | 393 | WP_107612757.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM26_RS06405 (OGM26_06405) | 1344944..1345306 | + | 363 | WP_009892945.1 | hypothetical protein | - |
| OGM26_RS06410 (OGM26_06410) | 1345398..1346006 | + | 609 | WP_225532658.1 | hypothetical protein | - |
| OGM26_RS06415 (OGM26_06415) | 1346026..1346445 | + | 420 | WP_009889019.1 | hypothetical protein | - |
| OGM26_RS06420 (OGM26_06420) | 1346435..1346959 | + | 525 | WP_009889021.1 | hypothetical protein | - |
| OGM26_RS06425 (OGM26_06425) | 1347271..1347828 | + | 558 | WP_009889023.1 | elongation factor P | - |
| OGM26_RS06430 (OGM26_06430) | 1347920..1348375 | + | 456 | WP_009889025.1 | hypothetical protein | - |
| OGM26_RS06435 (OGM26_06435) | 1348538..1349248 | + | 711 | WP_003428341.1 | ribonuclease III | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|