MGE detailed information
MGE type: Prophage MGE length: 67138 bp
Accession: NZ_CP107109 Location: 1684629..1751766 Organism: Clostridioides difficile strain R_cdtRmut6.1 Replicon: chromosome
Accession: NZ_CP107109 Location: 1684629..1751766 Organism: Clostridioides difficile strain R_cdtRmut6.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM27_RS07840 (OGM27_07840) | 1679734..1680495 | + | 762 | WP_009889424.1 | SprT family zinc-dependent metalloprotease | - |
| OGM27_RS07845 (OGM27_07845) | 1681026..1681265 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| OGM27_RS07850 (OGM27_07850) | 1681535..1682530 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| OGM27_RS07855 (OGM27_07855) | 1682583..1684271 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| OGM27_RS07860 (OGM27_07860) | 1684629..1685759 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| OGM27_RS07865 (OGM27_07865) | 1685838..1686545 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| OGM27_RS07870 (OGM27_07870) | 1686558..1687427 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| OGM27_RS07875 (OGM27_07875) | 1688047..1688553 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM27_RS07880 (OGM27_07880) | 1688629..1689177 | - | 549 | WP_009893126.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS07885 (OGM27_07885) | 1689189..1689530 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| OGM27_RS07890 (OGM27_07890) | 1689707..1689910 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS07895 (OGM27_07895) | 1689958..1690767 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| OGM27_RS07900 (OGM27_07900) | 1690814..1691023 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| OGM27_RS07905 (OGM27_07905) | 1691033..1691407 | - | 375 | WP_003433505.1 | DUF6173 family protein | - |
| OGM27_RS07910 (OGM27_07910) | 1691483..1691680 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS07915 (OGM27_07915) | 1691711..1692103 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS07920 (OGM27_07920) | 1692090..1692233 | + | 144 | WP_009888817.1 | hypothetical protein | - |
| OGM27_RS07925 (OGM27_07925) | 1692304..1692741 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| OGM27_RS07930 (OGM27_07930) | 1692753..1693919 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| OGM27_RS07935 (OGM27_07935) | 1693934..1694269 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| OGM27_RS07940 (OGM27_07940) | 1694322..1694894 | + | 573 | WP_003429822.1 | sigma factor | - |
| OGM27_RS07945 (OGM27_07945) | 1694917..1695489 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| OGM27_RS07950 (OGM27_07950) | 1695489..1697447 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| OGM27_RS07955 (OGM27_07955) | 1697459..1699876 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| OGM27_RS07960 (OGM27_07960) | 1700158..1700484 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| OGM27_RS07965 (OGM27_07965) | 1700433..1701803 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| OGM27_RS07970 (OGM27_07970) | 1701827..1701964 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| OGM27_RS07975 (OGM27_07975) | 1701957..1702436 | + | 480 | WP_009888825.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM27_RS07980 (OGM27_07980) | 1702719..1703171 | + | 453 | WP_009888826.1 | phage antirepressor | - |
| OGM27_RS07985 (OGM27_07985) | 1703463..1704437 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| OGM27_RS07990 (OGM27_07990) | 1704458..1704967 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| OGM27_RS07995 (OGM27_07995) | 1705037..1705729 | + | 693 | WP_009888829.1 | phage terminase small subunit | - |
| OGM27_RS08000 (OGM27_08000) | 1705719..1706960 | + | 1242 | WP_009888830.1 | PBSX family phage terminase large subunit | - |
| OGM27_RS08005 (OGM27_08005) | 1706966..1708408 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| OGM27_RS08010 (OGM27_08010) | 1708398..1709933 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| OGM27_RS08015 (OGM27_08015) | 1709935..1710183 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| OGM27_RS08020 (OGM27_08020) | 1710251..1710814 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| OGM27_RS08025 (OGM27_08025) | 1710826..1711716 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| OGM27_RS08030 (OGM27_08030) | 1711735..1711968 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| OGM27_RS08035 (OGM27_08035) | 1711978..1712379 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| OGM27_RS08040 (OGM27_08040) | 1712373..1712720 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| OGM27_RS08045 (OGM27_08045) | 1712720..1713010 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| OGM27_RS08050 (OGM27_08050) | 1713120..1713926 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| OGM27_RS08055 (OGM27_08055) | 1714275..1714712 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| OGM27_RS08060 (OGM27_08060) | 1714705..1714881 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| OGM27_RS08065 (OGM27_08065) | 1714882..1716192 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| OGM27_RS08070 (OGM27_08070) | 1716209..1716679 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| OGM27_RS08075 (OGM27_08075) | 1716738..1717565 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| OGM27_RS08080 (OGM27_08080) | 1717637..1718077 | + | 441 | WP_003429853.1 | phage portal protein | - |
| OGM27_RS08085 (OGM27_08085) | 1718418..1718579 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1718499..1718638 | - | 140 | - | - | Antitoxin Detail |
| OGM27_RS08090 (OGM27_08090) | 1719916..1720104 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| OGM27_RS08095 (OGM27_08095) | 1720223..1721089 | + | 867 | WP_009888845.1 | BRO family protein | - |
| OGM27_RS08100 (OGM27_08100) | 1721142..1721276 | + | 135 | WP_009888846.1 | hypothetical protein | - |
| OGM27_RS08105 (OGM27_08105) | 1721954..1722481 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| OGM27_RS08110 (OGM27_08110) | 1722619..1723386 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| OGM27_RS08115 (OGM27_08115) | 1723452..1725824 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| OGM27_RS08120 (OGM27_08120) | 1725841..1726530 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OGM27_RS08125 (OGM27_08125) | 1726523..1728415 | + | 1893 | WP_009893140.1 | NlpC/P60 family protein | - |
| OGM27_RS08130 (OGM27_08130) | 1728429..1728689 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| OGM27_RS08135 (OGM27_08135) | 1728694..1729113 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| OGM27_RS08140 (OGM27_08140) | 1729114..1730163 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| OGM27_RS08145 (OGM27_08145) | 1730156..1730773 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| OGM27_RS08150 (OGM27_08150) | 1730785..1731810 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| OGM27_RS08155 (OGM27_08155) | 1731827..1733353 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| OGM27_RS08160 (OGM27_08160) | 1733368..1733661 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| OGM27_RS08165 (OGM27_08165) | 1733661..1733843 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| OGM27_RS08170 (OGM27_08170) | 1733877..1734443 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| OGM27_RS08175 (OGM27_08175) | 1734474..1734764 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| OGM27_RS08180 (OGM27_08180) | 1734768..1735025 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| OGM27_RS08185 (OGM27_08185) | 1735286..1736149 | + | 864 | WP_003429958.1 | Abi family protein | - |
| OGM27_RS08190 (OGM27_08190) | 1736228..1737040 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM27_RS08195 (OGM27_08195) | 1737134..1739533 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| OGM27_RS08200 (OGM27_08200) | 1739574..1739759 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| OGM27_RS08205 (OGM27_08205) | 1739988..1740116 | - | 129 | WP_003433683.1 | hypothetical protein | - |
| OGM27_RS08210 (OGM27_08210) | 1740454..1741131 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| OGM27_RS08215 (OGM27_08215) | 1741305..1743341 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| OGM27_RS08220 (OGM27_08220) | 1743532..1744098 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| OGM27_RS08225 (OGM27_08225) | 1744382..1744918 | + | 537 | WP_009889454.1 | alpha/beta fold hydrolase | - |
| OGM27_RS08230 (OGM27_08230) | 1745550..1745648 | + | 99 | Protein_1534 | transposase | - |
| OGM27_RS08235 (OGM27_08235) | 1745650..1746767 | + | 1118 | Protein_1535 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| OGM27_RS08240 (OGM27_08240) | 1746886..1747293 | + | 408 | Protein_1536 | alpha/beta hydrolase | - |
| OGM27_RS08245 (OGM27_08245) | 1747758..1748972 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS08250 (OGM27_08250) | 1749392..1749913 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| OGM27_RS08255 (OGM27_08255) | 1750269..1751066 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| OGM27_RS08260 (OGM27_08260) | 1751176..1751766 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| OGM27_RS08265 (OGM27_08265) | 1751832..1753529 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| OGM27_RS08270 (OGM27_08270) | 1753743..1754582 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|