MGE detailed information
MGE type: Prophage MGE length: 57618 bp
Accession: NZ_CP016106 Location: 2725214..2782831 Organism: Clostridioides difficile strain DSM 29637 Replicon: chromosome
Accession: NZ_CP016106 Location: 2725214..2782831 Organism: Clostridioides difficile strain DSM 29637 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29637_RS13010 () | 2720405..2721622 | - | 1218 | WP_009890721.1 | threonine ammonia-lyase | - |
| CDIF29637_RS13015 () | 2722281..2723909 | + | 1629 | WP_004454813.1 | aspartate 4-decarboxylase | - |
| CDIF29637_RS13020 () | 2724030..2725025 | + | 996 | WP_003431031.1 | asparaginase | - |
| CDIF29637_RS13025 () | 2725214..2725597 | - | 384 | WP_021372135.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29637_RS13030 () | 2725978..2726154 | + | 177 | WP_021401500.1 | hypothetical protein | - |
| CDIF29637_RS13035 () | 2726381..2726581 | + | 201 | WP_021401427.1 | cold-shock protein | - |
| CDIF29637_RS13040 () | 2726981..2728066 | - | 1086 | WP_021401419.1 | HigA family addiction module antidote protein | - |
| CDIF29637_RS13045 () | 2728035..2728379 | - | 345 | WP_021401421.1 | type II toxin-antitoxin system YoeB family toxin | - |
| CDIF29637_RS13050 () | 2728951..2729247 | - | 297 | WP_032506554.1 | hypothetical protein | - |
| CDIF29637_RS13055 () | 2729336..2729863 | - | 528 | WP_021401450.1 | hypothetical protein | - |
| CDIF29637_RS13060 () | 2729926..2730771 | - | 846 | WP_021401396.1 | hypothetical protein | - |
| CDIF29637_RS13065 () | 2731061..2731858 | - | 798 | WP_021401464.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29637_RS13070 () | 2731858..2732124 | - | 267 | WP_021401507.1 | hypothetical protein | - |
| CDIF29637_RS19320 () | 2732188..2732358 | - | 171 | WP_021401408.1 | hypothetical protein | - |
| CDIF29637_RS13075 () | 2732370..2732717 | - | 348 | WP_021401418.1 | hypothetical protein | - |
| CDIF29637_RS13080 () | 2732733..2734370 | - | 1638 | WP_021401434.1 | glycine rich family protein | - |
| CDIF29637_RS13085 () | 2734384..2735190 | - | 807 | WP_021401485.1 | phage tail protein | - |
| CDIF29637_RS13090 () | 2735206..2735823 | - | 618 | WP_021401362.1 | YmfQ family protein | - |
| CDIF29637_RS13095 () | 2735816..2736865 | - | 1050 | WP_118701630.1 | baseplate J/gp47 family protein | - |
| CDIF29637_RS13100 () | 2736866..2737285 | - | 420 | WP_021359016.1 | DUF2634 domain-containing protein | - |
| CDIF29637_RS13105 () | 2737290..2737550 | - | 261 | WP_009896648.1 | DUF2577 domain-containing protein | - |
| CDIF29637_RS13110 () | 2737564..2739522 | - | 1959 | WP_021401150.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF29637_RS13115 () | 2739515..2740210 | - | 696 | WP_021401153.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29637_RS13120 () | 2740222..2742572 | - | 2351 | Protein_2442 | tape measure protein | - |
| CDIF29637_RS13125 () | 2742643..2743212 | - | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CDIF29637_RS13130 () | 2743256..2743816 | - | 561 | WP_011861034.1 | lipoprotein | - |
| CDIF29637_RS19325 () | 2744622..2744798 | - | 177 | WP_021388791.1 | hypothetical protein | - |
| CDIF29637_RS13135 () | 2744861..2745679 | - | 819 | WP_021401155.1 | hypothetical protein | - |
| CDIF29637_RS13140 () | 2745800..2745982 | - | 183 | WP_021401149.1 | hypothetical protein | - |
| CDIF29637_RS13145 () | 2747142..2747300 | - | 159 | WP_021401161.1 | hypothetical protein | - |
| CDIF29637_RS13150 () | 2747362..2748168 | - | 807 | WP_021401148.1 | hypothetical protein | - |
| CDIF29637_RS13155 () | 2748294..2748464 | - | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| CDIF29637_RS13160 () | 2748767..2749477 | - | 711 | WP_079747220.1 | SHOCT domain-containing protein | - |
| - () | 2750493..2750598 | + | 106 | NuclAT_3 | - | - |
| - () | 2750493..2750598 | + | 106 | NuclAT_4 | - | - |
| - () | 2750943..2751076 | + | 134 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2750943..2751076 | + | 134 | NuclAT_1 | - | Antitoxin Detail |
| CDIF29637_RS13165 () | 2750996..2751157 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| CDIF29637_RS13175 () | 2751498..2751938 | - | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF29637_RS13180 () | 2752010..2752480 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF29637_RS13185 () | 2752497..2753807 | - | 1311 | WP_021363494.1 | phage tail sheath family protein | - |
| CDIF29637_RS13190 () | 2753808..2753984 | - | 177 | WP_016728451.1 | hypothetical protein | - |
| CDIF29637_RS13195 () | 2753977..2754414 | - | 438 | WP_021401575.1 | hypothetical protein | - |
| CDIF29637_RS13200 () | 2754407..2754832 | - | 426 | WP_021401245.1 | HK97 gp10 family phage protein | - |
| CDIF29637_RS13205 () | 2754832..2755194 | - | 363 | WP_021401269.1 | hypothetical protein | - |
| CDIF29637_RS13210 () | 2755188..2755589 | - | 402 | WP_021401267.1 | hypothetical protein | - |
| CDIF29637_RS13215 () | 2755599..2755832 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF29637_RS13220 () | 2755832..2756731 | - | 900 | WP_021425038.1 | hypothetical protein | - |
| CDIF29637_RS13225 () | 2756743..2757306 | - | 564 | WP_021380284.1 | phage scaffolding protein | - |
| CDIF29637_RS13230 () | 2757374..2757622 | - | 249 | WP_009888832.1 | hypothetical protein | - |
| CDIF29637_RS13235 () | 2757624..2759159 | - | 1536 | WP_021401583.1 | minor capsid protein | - |
| CDIF29637_RS13240 () | 2759149..2760588 | - | 1440 | WP_021401584.1 | phage portal protein | - |
| CDIF29637_RS13245 () | 2760593..2761834 | - | 1242 | WP_021401582.1 | PBSX family phage terminase large subunit | - |
| CDIF29637_RS13250 () | 2761824..2762249 | - | 426 | WP_021401579.1 | hypothetical protein | - |
| CDIF29637_RS13255 () | 2762306..2763424 | - | 1119 | WP_021401585.1 | hypothetical protein | - |
| CDIF29637_RS13260 () | 2763544..2764110 | - | 567 | WP_021360452.1 | hypothetical protein | - |
| CDIF29637_RS13265 () | 2764554..2764772 | - | 219 | WP_021360451.1 | hypothetical protein | - |
| CDIF29637_RS13270 () | 2764979..2765225 | - | 247 | Protein_2472 | hypothetical protein | - |
| CDIF29637_RS13275 () | 2765671..2766159 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CDIF29637_RS13280 () | 2766249..2767085 | - | 837 | WP_021401529.1 | ORF6C domain-containing protein | - |
| CDIF29637_RS13295 () | 2768018..2768257 | - | 240 | WP_021401551.1 | hypothetical protein | - |
| CDIF29637_RS13300 () | 2768366..2768701 | - | 336 | WP_021401562.1 | hypothetical protein | - |
| CDIF29637_RS13305 () | 2768819..2769184 | - | 366 | WP_021387467.1 | NUMOD1 domain protein | - |
| CDIF29637_RS13310 () | 2769198..2769455 | - | 258 | WP_021401537.1 | hypothetical protein | - |
| CDIF29637_RS13315 () | 2769632..2770006 | - | 375 | WP_021401522.1 | hypothetical protein | - |
| CDIF29637_RS13320 () | 2770076..2770210 | - | 135 | Protein_2480 | DNA replication protein DnaD | - |
| CDIF29637_RS19330 () | 2770903..2771163 | - | 261 | WP_021401540.1 | hypothetical protein | - |
| CDIF29637_RS19335 () | 2771257..2771805 | - | 549 | WP_021401569.1 | phage recombination protein Bet | - |
| CDIF29637_RS13330 () | 2772141..2772386 | - | 246 | WP_021401519.1 | hypothetical protein | - |
| CDIF29637_RS13335 () | 2772376..2772558 | - | 183 | WP_021401544.1 | hypothetical protein | - |
| CDIF29637_RS13340 () | 2772691..2773020 | - | 330 | WP_021401538.1 | helix-turn-helix domain-containing protein | - |
| CDIF29637_RS13345 () | 2773037..2773234 | - | 198 | WP_011860991.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29637_RS13350 () | 2773303..2773536 | + | 234 | WP_021372979.1 | hypothetical protein | - |
| CDIF29637_RS19250 () | 2773540..2773710 | - | 171 | WP_021401548.1 | hypothetical protein | - |
| CDIF29637_RS13355 () | 2773776..2774408 | - | 633 | WP_021401545.1 | hypothetical protein | - |
| CDIF29637_RS13360 () | 2774398..2774583 | - | 186 | WP_021401532.1 | hypothetical protein | - |
| CDIF29637_RS19255 () | 2774564..2774737 | - | 174 | WP_157971819.1 | hypothetical protein | - |
| CDIF29637_RS13365 () | 2774779..2775129 | + | 351 | WP_021401526.1 | helix-turn-helix domain-containing protein | - |
| CDIF29637_RS13370 () | 2775196..2775363 | + | 168 | WP_021396640.1 | Arc family DNA-binding protein | - |
| CDIF29637_RS19340 () | 2775375..2775512 | - | 138 | WP_021401552.1 | hypothetical protein | - |
| CDIF29637_RS13375 () | 2775569..2776357 | - | 789 | WP_021401530.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF29637_RS13380 () | 2776361..2776819 | - | 459 | WP_021401521.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29637_RS13385 () | 2776864..2777055 | - | 192 | WP_021401571.1 | HTH-type transcriptional regulator SinR | VF |
| CDIF29637_RS13390 () | 2777212..2777454 | + | 243 | WP_021401517.1 | helix-turn-helix domain-containing protein | - |
| CDIF29637_RS13395 () | 2777650..2777799 | - | 150 | WP_021401554.1 | helix-turn-helix domain-containing protein | - |
| CDIF29637_RS13400 () | 2777903..2778184 | + | 282 | WP_050573992.1 | helix-turn-helix domain-containing protein | - |
| CDIF29637_RS13405 () | 2778321..2778680 | + | 360 | WP_032506683.1 | hypothetical protein | - |
| CDIF29637_RS19260 () | 2778721..2778861 | - | 141 | WP_021401534.1 | hypothetical protein | - |
| CDIF29637_RS13410 () | 2779479..2780357 | - | 879 | Protein_2503 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CDIF29637_RS13415 () | 2780571..2780744 | + | 174 | Protein_2504 | Arm DNA-binding domain-containing protein | - |
| CDIF29637_RS13420 () | 2780763..2781184 | + | 422 | Protein_2505 | hypothetical protein | - |
| CDIF29637_RS13425 () | 2781408..2781680 | + | 273 | WP_004454820.1 | tyrosine-type recombinase/integrase | - |
| CDIF29637_RS13430 () | 2782043..2782123 | - | 81 | Protein_2507 | VOC family protein | - |
| CDIF29637_RS13435 () | 2782163..2782831 | - | 669 | WP_021401546.1 | VanZ family protein | - |
| CDIF29637_RS13440 () | 2783686..2786106 | - | 2421 | WP_003416419.1 | leucine--tRNA ligase | - |
| CDIF29637_RS13445 () | 2786460..2786810 | - | 351 | WP_003416416.1 | ribosome silencing factor | - |
| CDIF29637_RS13450 () | 2786927..2787499 | - | 573 | WP_003431048.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|