MGE detailed information
MGE type: Prophage MGE length: 61144 bp
Accession: NZ_CP025046 Location: 162357..223500 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Accession: NZ_CP025046 Location: 162357..223500 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR55_RS00910 () | 157949..158869 | + | 921 | WP_003434504.1 | aspartate carbamoyltransferase | - |
| CWR55_RS00915 () | 158908..159600 | + | 693 | WP_016729224.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| CWR55_RS00920 () | 159593..160495 | + | 903 | WP_003434510.1 | dihydroorotate dehydrogenase | - |
| CWR55_RS00925 () | 160580..161164 | + | 585 | WP_003420885.1 | orotate phosphoribosyltransferase | - |
| CWR55_RS00930 () | 161379..162305 | + | 927 | WP_009895279.1 | 2-dehydropantoate 2-reductase | - |
| CWR55_RS00935 () | 162357..163247 | - | 891 | WP_003435002.1 | LysR family transcriptional regulator | - |
| CWR55_RS00940 () | 163435..164466 | + | 1032 | WP_016729226.1 | putative sulfate exporter family transporter | - |
| CWR55_RS00945 () | 164760..165635 | + | 876 | WP_003435007.1 | DNA glycosylase | - |
| CWR55_RS00950 () | 165653..167143 | + | 1491 | WP_009888027.1 | cardiolipin synthase | - |
| CWR55_RS00955 () | 167336..167620 | + | 285 | WP_003420907.1 | co-chaperone GroES | - |
| CWR55_RS00960 () | 167653..169281 | + | 1629 | WP_016729227.1 | 60 kDa chaperonin | VF |
| CWR55_RS00965 () | 169543..170283 | + | 741 | WP_003435015.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| CWR55_RS00970 () | 170367..171101 | + | 735 | WP_003435017.1 | nickel pincer cofactor biosynthesis protein LarC | - |
| CWR55_RS00975 () | 171131..171550 | + | 420 | WP_016729228.1 | DUF111 family protein | - |
| CWR55_RS00980 () | 171932..173467 | + | 1536 | WP_003425341.1 | glutamine-hydrolyzing GMP synthase | - |
| CWR55_RS00985 () | 173544..174590 | - | 1047 | WP_016056348.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CWR55_RS00990 () | 174667..174882 | - | 216 | WP_016056349.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS00995 () | 175316..175717 | - | 402 | WP_016056351.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS01000 () | 175882..176094 | + | 213 | WP_074046669.1 | helix-turn-helix transcriptional regulator | - |
| CWR55_RS01005 () | 176389..176607 | - | 219 | WP_016056353.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS01010 () | 176726..176914 | + | 189 | WP_032508200.1 | helix-turn-helix transcriptional regulator | - |
| CWR55_RS01015 () | 176956..177750 | + | 795 | WP_016056355.1 | phage regulatory protein | - |
| CWR55_RS01020 () | 177834..178214 | + | 381 | WP_016056356.1 | hypothetical protein | - |
| CWR55_RS19770 () | 178204..178353 | - | 150 | WP_016056357.1 | hypothetical protein | - |
| CWR55_RS01025 () | 178415..178612 | + | 198 | WP_016056358.1 | helix-turn-helix transcriptional regulator | - |
| CWR55_RS01030 () | 178651..178857 | + | 207 | WP_016056359.1 | hypothetical protein | - |
| CWR55_RS01040 () | 179270..179587 | + | 318 | WP_016056361.1 | hypothetical protein | - |
| CWR55_RS01045 () | 179670..180179 | + | 510 | WP_016056362.1 | siphovirus Gp157 family protein | - |
| CWR55_RS01050 () | 180189..180797 | + | 609 | WP_016056363.1 | ERF family protein | - |
| CWR55_RS01055 () | 180807..181688 | + | 882 | WP_021391332.1 | DnaD domain protein | - |
| CWR55_RS01060 () | 181749..181922 | + | 174 | WP_015984887.1 | hypothetical protein | - |
| CWR55_RS01065 () | 181938..182345 | + | 408 | WP_021372201.1 | single-stranded DNA-binding protein | - |
| CWR55_RS19775 () | 182419..182667 | + | 249 | Protein_164 | hypothetical protein | - |
| CWR55_RS01070 () | 182665..182916 | + | 252 | WP_032512589.1 | hypothetical protein | - |
| CWR55_RS01075 () | 182930..183295 | + | 366 | WP_021372195.1 | NUMOD1 domain protein | - |
| CWR55_RS01080 () | 183413..183862 | + | 450 | WP_021372197.1 | yopX family protein | - |
| CWR55_RS19795 () | 183965..184141 | + | 177 | WP_021360988.1 | hypothetical protein | - |
| CWR55_RS01090 () | 184251..185324 | + | 1074 | WP_021391734.1 | DNA cytosine methyltransferase | - |
| CWR55_RS01095 () | 185404..185613 | + | 210 | WP_015984893.1 | hypothetical protein | - |
| CWR55_RS01100 () | 185625..186629 | + | 1005 | WP_015984894.1 | nucleoid-associated protein | - |
| CWR55_RS01105 () | 186711..187040 | + | 330 | WP_015994378.1 | hypothetical protein | - |
| CWR55_RS01110 () | 187077..187448 | + | 372 | WP_015994379.1 | hypothetical protein | - |
| CWR55_RS01115 () | 187451..187633 | + | 183 | WP_015994380.1 | hypothetical protein | - |
| CWR55_RS01120 () | 187708..188049 | + | 342 | WP_021378977.1 | peptide chain release factor-like protein | - |
| CWR55_RS01130 () | 188175..188582 | + | 408 | WP_021368352.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CWR55_RS01135 () | 188597..189322 | + | 726 | WP_021368350.1 | antA/AntB antirepressor family protein | - |
| CWR55_RS01140 () | 189416..189904 | + | 489 | WP_011861022.1 | hypothetical protein | - |
| CWR55_RS01145 () | 190465..191142 | + | 678 | WP_015994390.1 | Bro-N domain-containing protein | - |
| CWR55_RS01150 () | 191205..191906 | + | 702 | WP_015994339.1 | terminase small subunit | - |
| CWR55_RS01155 () | 191899..193308 | + | 1410 | WP_016056315.1 | DEAD/DEAH box helicase family protein | - |
| CWR55_RS01160 () | 193299..194801 | + | 1503 | WP_016056316.1 | phage portal protein | - |
| CWR55_RS01165 () | 194794..195801 | + | 1008 | WP_021364160.1 | hypothetical protein | - |
| CWR55_RS01170 () | 195821..197155 | + | 1335 | WP_016056318.1 | hypothetical protein | - |
| CWR55_RS01175 () | 197171..197554 | + | 384 | WP_015994344.1 | DUF2190 family protein | - |
| CWR55_RS01180 () | 197573..198610 | + | 1038 | WP_015994345.1 | hypothetical protein | - |
| CWR55_RS01185 () | 198650..198988 | + | 339 | WP_016056319.1 | hypothetical protein | - |
| CWR55_RS01190 () | 198985..199362 | + | 378 | WP_016056320.1 | hypothetical protein | - |
| CWR55_RS01195 () | 199364..199774 | + | 411 | WP_016056321.1 | hypothetical protein | - |
| CWR55_RS01200 () | 199775..200596 | + | 822 | WP_021364150.1 | hypothetical protein | - |
| CWR55_RS01205 () | 200609..200812 | + | 204 | WP_021364175.1 | hypothetical protein | - |
| CWR55_RS01210 () | 200814..202235 | + | 1422 | WP_021364158.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CWR55_RS01215 () | 202251..202673 | + | 423 | WP_021362367.1 | hypothetical protein | - |
| CWR55_RS01220 () | 202752..203225 | + | 474 | WP_021362368.1 | phage XkdN-like family protein | - |
| CWR55_RS01225 () | 203406..207734 | + | 4329 | WP_021364196.1 | phage tail tape measure protein | - |
| CWR55_RS19740 () | 207814..208608 | + | 795 | WP_021364171.1 | hypothetical protein | - |
| CWR55_RS01235 () | 208678..209349 | + | 672 | WP_021364193.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CWR55_RS01240 () | 209346..210308 | + | 963 | WP_016056331.1 | hypothetical protein | - |
| CWR55_RS01245 () | 210301..210666 | + | 366 | WP_016056332.1 | hypothetical protein | - |
| CWR55_RS01250 () | 210641..211099 | + | 459 | WP_021364177.1 | DUF2634 domain-containing protein | - |
| CWR55_RS01255 () | 211108..212244 | + | 1137 | WP_021364165.1 | baseplate J/gp47 family protein | - |
| CWR55_RS01260 () | 212241..212870 | + | 630 | WP_021364184.1 | YmfQ family protein | - |
| CWR55_RS01265 () | 212883..213989 | + | 1107 | WP_021364198.1 | phage tail protein | - |
| CWR55_RS01270 () | 214003..214641 | + | 639 | WP_021364189.1 | hypothetical protein | - |
| CWR55_RS01275 () | 214651..214863 | + | 213 | WP_021364148.1 | hypothetical protein | - |
| CWR55_RS01280 () | 214863..215045 | + | 183 | WP_009898423.1 | hypothetical protein | - |
| CWR55_RS01285 () | 215079..216314 | + | 1236 | WP_021364143.1 | hypothetical protein | - |
| CWR55_RS01290 () | 216311..216610 | + | 300 | WP_009895122.1 | hypothetical protein | - |
| CWR55_RS01295 () | 216611..216748 | + | 138 | WP_021364182.1 | XkdX family protein | - |
| CWR55_RS01300 () | 216876..218441 | + | 1566 | WP_021364174.1 | glycine rich family protein | - |
| CWR55_RS01305 () | 218499..218729 | + | 231 | WP_021364192.1 | hemolysin XhlA family protein | - |
| CWR55_RS01310 () | 218749..219006 | + | 258 | WP_009898413.1 | phage holin family protein | - |
| CWR55_RS01315 () | 219006..219818 | + | 813 | WP_016056343.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CWR55_RS01320 () | 220068..220559 | + | 492 | WP_016056344.1 | hypothetical protein | - |
| CWR55_RS01325 () | 220561..221127 | + | 567 | WP_016056345.1 | hypothetical protein | - |
| CWR55_RS01330 () | 221537..221725 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CWR55_RS01335 () | 221983..222126 | + | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| - () | 222048..222198 | - | 151 | NuclAT_1 | - | Antitoxin Detail |
| - () | 222052..222198 | - | 147 | NuclAT_2 | - | - |
| CWR55_RS01340 () | 222634..223023 | + | 390 | WP_021376798.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS01345 () | 223117..223500 | + | 384 | WP_021364164.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS01355 () | 224179..225609 | + | 1431 | WP_021362134.1 | metallophosphoesterase | - |
| CWR55_RS01360 () | 225757..226107 | - | 351 | Protein_221 | LysR family transcriptional regulator | - |
| CWR55_RS01365 () | 226102..226623 | + | 522 | WP_011860666.1 | chromate transporter | - |
| CWR55_RS01370 () | 226752..227546 | - | 795 | WP_021404377.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|